pycom09g12550

Homeobox-leucine zipper protein GLABRA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0024666
Physical Location & Seq
Forward (+)
11149819 .. 11150175
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g12550.1

Sequence Viewer

Length: 357 bp
ATGTGGATACTACAAGATACCTGCATAAACTCTTACGAGTCGATGGTGGTCTACGCTCCAGTGGATATCACTGGAATGCAGTCTGTGATGACAGGATGTGGCGCGAGCAACATTGCCATATTGCCTTCAGGGTTCTCGATTCTTCCTGACGGGCTGGAGTCGAGGCCGATGGTCATCACATCCAGGCAAGAAGACAGGAGCAGTGAAGGAGGAACTCTGCTGACAGCAGCATTTCAAGTCTTGACAAATTCCTCCCCCACAGCCAAGCTAACAATGGAGTCTGTGGAGTCTGCCAACACACTAATATCATGTACTTTGAGAAATATTAAAACAACCTTGCAGTGTGAGGATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox START

Protein Analysis

119

Amino Acids

12.61

Weight (kDa)

4.31

Isoelectric Point (pI)

68.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDF2_C PF25797 1 - 115 5.7e-48 PDF2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024666)

Species Orthologous Gene IDs
pyrus_communis pycom09g12550
rosa_multiflora Rmu_sc0015810.1_g000001 Rmu_sc0023668.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 104
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 313
AgsI TTSAA 1 cut(s) 236
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 247
AspLEI GCGC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 239
BccI CCATC 3 cut(s) 37, 163, 344
BciT130I CCWGG 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 2 cut(s) 42, 176
BsaBI GATNNNNATC 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 59, 76
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 173
BseBI CCWGG 1 cut(s) 184
BseGI GGATG 3 cut(s) 101, 179, 355
BseJI GATNNNNATC 1 cut(s) 173
BseMI GCAATG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 59, 76
BseXI GCAGC 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 1 cut(s) 166
BspANI GGCC 1 cut(s) 166
BspFNI CGCG 1 cut(s) 104
BspMI ACCTGC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 2 cut(s) 59, 76
Bst2UI CCWGG 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 106
BstF5I GGATG 3 cut(s) 101, 179, 355
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 3 cut(s) 101, 179, 355
BtsI GCAGTG 2 cut(s) 208, 347
BtsIMutI CAGTG 4 cut(s) 66, 69, 208, 347
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 106
CfoI GCGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 312
CviAII CATG 1 cut(s) 309
CviJI RGCY 5 cut(s) 154, 166, 263, 268, 354
CviKI_1 RGCY 5 cut(s) 154, 166, 263, 268, 354
CviQI GTAC 1 cut(s) 312
Eco32I GATATC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 182
EcoRV GATATC 1 cut(s) 67
FaeI CATG 1 cut(s) 312
FaiI YATR 3 cut(s) 26, 119, 310
FatI CATG 1 cut(s) 308
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 2 cut(s) 108, 166
Fsp4HI GCNGC 1 cut(s) 228
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 228
GsuI CTGGAG 2 cut(s) 42, 176
HaeIII GGCC 1 cut(s) 166
HhaI GCGC 1 cut(s) 104
Hin1II CATG 1 cut(s) 312
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 5 cut(s) 38, 139, 158, 278, 287
Hpy166II GTNNAC 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 136, 146, 241
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 135, 200
HpyCH4V TGCA 3 cut(s) 24, 79, 340
Hsp92II CATG 1 cut(s) 312
HspAI GCGC 1 cut(s) 102
LmnI GCTCC 2 cut(s) 61, 198
Lsp1109I GCAGC 1 cut(s) 239
MboII GAAGA 2 cut(s) 134, 203
MluCI AATT 1 cut(s) 247
MlyI GAGTC 4 cut(s) 47, 167, 287, 296
MnlI CCTC 4 cut(s) 156, 203, 262, 340
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 184
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 1 cut(s) 184
MvnI CGCG 1 cut(s) 104
NlaIII CATG 1 cut(s) 312
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 4 cut(s) 46, 166, 286, 295
PpsI GAGTC 4 cut(s) 46, 166, 286, 295
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 228
SchI GAGTC 4 cut(s) 47, 167, 287, 296
ScrFI CCNGG 1 cut(s) 184
SetI ASST 3 cut(s) 23, 270, 338
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 1 cut(s) 247
SspI AATATT 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 182
TaqI TCGA 3 cut(s) 41, 137, 161
TasI AATT 1 cut(s) 247
TatI WGTACW 1 cut(s) 311
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 4 cut(s) 66, 76, 208, 347
TseI GCWGC 1 cut(s) 227
TspRI CASTG 4 cut(s) 66, 76, 208, 347
XapI RAATTY 1 cut(s) 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.