Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023668.1

Orthogroup ID

OG0024666

Physical Location & Seq

Genomic Coordinates Forward (+)

6 .. 878

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023668.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgcaggagatggcccacatcgccaagggccaggaccaaggcaactgcgtctccctcctccgcgccagagccatgaacgcaaaccaaaacagcatgctgatattacaagagacgtgcatcgacgcggccgggtcgcttgtggtgtacgcgccggtggatattcctgccatgcacgtggtgatgaacggaggggactcggcctacgtggcgctgctgccgtcggggttcgcgatagtcccggacgggccgggctcgcgtggttcggaggccaaggcgggccagggcagcagcaacggcggcggcggggaggccagggtgagtgggtcactgttaacgatgacgtttcagatattggtcaacagtctgccgtcggcgaagttgaccgtggagtcagtggagactgtcaacaatctcatctcctgcaccgttcagaagatcaaggccgcgctccagtgcgagagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

154

Amino Acids

15.82

Weight (kDa)

5.23

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024666)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g12550
rosa_multiflora	Rmu_sc0015810.1_g000001 Rmu_sc0023668.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	388
AccII	CGCG	6 cut(s)	63, 125, 149, 230, 256, 446
AciI	CCGC	7 cut(s)	61, 125, 275, 297, 300, 303, 444
AcoI	YGGCCR	1 cut(s)	126
AcvI	CACGTG	1 cut(s)	175
AdeI	CACNNNGTG	1 cut(s)	178
AfaI	GTAC	1 cut(s)	146
AjiI	CACGTC	1 cut(s)	114
AjnI	CCWGG	3 cut(s)	30, 279, 311
AluBI	AGCT	1 cut(s)	462
AluI	AGCT	1 cut(s)	462
Alw26I	GTCTC	3 cut(s)	55, 104, 392
AoxI	GGCC	9 cut(s)	12, 28, 126, 198, 245, 267, 277, 309, 441
ApeKI	GCWGC	4 cut(s)	211, 214, 285, 288
AspLEI	GCGC	4 cut(s)	65, 151, 211, 448
AspS9I	GGNCC	5 cut(s)	13, 28, 34, 245, 277
AsuC2I	CCSGG	3 cut(s)	130, 239, 249
AsuHPI	GGTGA	2 cut(s)	190, 328
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	254
BbrPI	CACGTG	1 cut(s)	175
BbvI	GCAGC	4 cut(s)	198, 201, 297, 300
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	3 cut(s)	202, 310, 352
BciT130I	CCWGG	3 cut(s)	32, 281, 313
BcnI	CCSGG	3 cut(s)	130, 239, 249
BcoDI	GTCTC	3 cut(s)	55, 104, 392
BfoI	RGCGCY	1 cut(s)	212
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	8 cut(s)	126, 212, 215, 286, 289, 298, 301, 444
BlsI	GCNGC	8 cut(s)	127, 213, 216, 287, 290, 299, 302, 445
Bme1390I	CCNGG	6 cut(s)	32, 130, 239, 249, 281, 313
Bme18I	GGWCC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	114
BmgT120I	GGNCC	5 cut(s)	13, 28, 34, 245, 277
BmrFI	CCNGG	6 cut(s)	32, 130, 239, 249, 281, 313
BmsI	GCATC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	434
BpuMI	CCSGG	3 cut(s)	130, 239, 249
BsaAI	YACGTR	2 cut(s)	175, 205
BsaJI	CCNNGG	6 cut(s)	24, 37, 270, 280, 312, 384
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	451
BseBI	CCWGG	3 cut(s)	32, 281, 313
BseDI	CCNNGG	6 cut(s)	24, 37, 270, 280, 312, 384
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	1 cut(s)	47
BseX3I	CGGCCG	1 cut(s)	126
BseXI	GCAGC	4 cut(s)	198, 201, 297, 300
BsgI	GTGCAG	1 cut(s)	406
Bsh1236I	CGCG	6 cut(s)	63, 125, 149, 230, 256, 446
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	9 cut(s)	14, 30, 128, 200, 247, 269, 279, 311, 443
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	4 cut(s)	129, 152, 239, 248
BslFI	GGGAC	2 cut(s)	206, 221
BsmAI	GTCTC	3 cut(s)	55, 104, 392
BsmBI	CGTCTC	2 cut(s)	55, 104
BsmFI	GGGAC	2 cut(s)	206, 221
BsnI	GGCC	9 cut(s)	14, 30, 128, 200, 247, 269, 279, 311, 443
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	435
Bsp68I	TCGCGA	1 cut(s)	230
BspACI	CCGC	7 cut(s)	61, 125, 275, 297, 300, 303, 444
BspANI	GGCC	9 cut(s)	14, 30, 128, 200, 247, 269, 279, 311, 443
BspFNI	CGCG	6 cut(s)	63, 125, 149, 230, 256, 446
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	6 cut(s)	24, 37, 270, 280, 312, 384
BssMI	GATC	1 cut(s)	435
BssT1I	CCWWGG	3 cut(s)	24, 37, 270
Bst2UI	CCWGG	3 cut(s)	32, 281, 313
Bst4CI	ACNGT	5 cut(s)	330, 362, 385, 403, 427
BstBAI	YACGTR	2 cut(s)	175, 205
BstC8I	GCNNGC	3 cut(s)	95, 254, 277
BstDSI	CCRYGG	1 cut(s)	384
BstFNI	CGCG	6 cut(s)	63, 125, 149, 230, 256, 446
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	4 cut(s)	65, 151, 211, 448
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	3 cut(s)	55, 104, 392
BstMBI	GATC	1 cut(s)	435
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 77, 206, 253, 285, 294, 297
BstNI	CCWGG	3 cut(s)	32, 281, 313
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	6 cut(s)	30, 128, 237, 247, 279, 311
BstUI	CGCG	6 cut(s)	63, 125, 149, 230, 256, 446
BstV1I	GCAGC	4 cut(s)	198, 201, 297, 300
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstZI	CGGCCG	1 cut(s)	126
BsuRI	GGCC	9 cut(s)	14, 30, 128, 200, 247, 269, 279, 311, 443
BtgI	CCRYGG	1 cut(s)	384
BtgZI	GCGATG	1 cut(s)	4
BtrI	CACGTC	1 cut(s)	114
BtsIMutI	CAGTG	3 cut(s)	326, 399, 458
BtuMI	TCGCGA	1 cut(s)	230
Cac8I	GCNNGC	3 cut(s)	95, 254, 277
CfoI	GCGC	4 cut(s)	65, 151, 211, 448
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	5 cut(s)	13, 28, 34, 245, 277
CseI	GACGC	2 cut(s)	37, 131
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	3 cut(s)	73, 94, 169
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
DraIII	CACNNNGTG	1 cut(s)	178
DrdI	GACNNNNNNGTC	1 cut(s)	388
DseDI	GACNNNNNNGTC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	126
EagI	CGGCCG	1 cut(s)	126
EclXI	CGGCCG	1 cut(s)	126
Eco130I	CCWWGG	3 cut(s)	24, 37, 270
Eco24I	GRGCYC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	34
Eco52I	CGGCCG	1 cut(s)	126
Eco72I	CACGTG	1 cut(s)	175
EcoRII	CCWGG	3 cut(s)	30, 279, 311
EcoT14I	CCWWGG	3 cut(s)	24, 37, 270
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	3 cut(s)	24, 37, 270
Esp3I	CGTCTC	2 cut(s)	55, 104
FaeI	CATG	3 cut(s)	76, 97, 172
FaiI	YATR	3 cut(s)	74, 95, 170
FaqI	GGGAC	2 cut(s)	206, 221
FatI	CATG	3 cut(s)	72, 93, 168
FauI	CCCGC	2 cut(s)	268, 296
Fnu4HI	GCNGC	8 cut(s)	126, 212, 215, 286, 289, 298, 301, 444
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	8 cut(s)	126, 212, 215, 286, 289, 298, 301, 444
GlaI	GCGC	4 cut(s)	64, 150, 210, 447
GluI	GCNGC	8 cut(s)	126, 212, 215, 286, 289, 298, 301, 444
GsuI	CTGGAG	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	9 cut(s)	14, 30, 128, 200, 247, 269, 279, 311, 443
HapII	CCGG	4 cut(s)	129, 152, 239, 248
HgaI	GACGC	2 cut(s)	37, 131
HhaI	GCGC	4 cut(s)	65, 151, 211, 448
Hin1II	CATG	3 cut(s)	76, 97, 172
Hin6I	GCGC	4 cut(s)	63, 149, 209, 446
HinP1I	GCGC	4 cut(s)	63, 149, 209, 446
HincII	GTYRAC	4 cut(s)	333, 358, 381, 406
HindII	GTYRAC	4 cut(s)	333, 358, 381, 406
HinfI	GANTC	2 cut(s)	194, 389
HpaI	GTTAAC	1 cut(s)	333
HpaII	CCGG	4 cut(s)	129, 152, 239, 248
HphI	GGTGA	2 cut(s)	190, 328
Hpy166II	GTNNAC	5 cut(s)	145, 333, 358, 381, 406
Hpy188I	TCNGA	3 cut(s)	265, 348, 432
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	5 cut(s)	145, 333, 358, 381, 406
Hpy99I	CGWCG	3 cut(s)	125, 223, 373
HpyCH4III	ACNGT	5 cut(s)	330, 362, 385, 403, 427
HpyCH4IV	ACGT	4 cut(s)	113, 174, 204, 341
HpyCH4V	TGCA	4 cut(s)	4, 117, 172, 423
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 77, 206, 253, 285, 294, 297
HpySE526I	ACGT	4 cut(s)	113, 174, 204, 341
Hsp92II	CATG	3 cut(s)	76, 97, 172
HspAI	GCGC	4 cut(s)	63, 149, 209, 446
KspAI	GTTAAC	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	453
Lsp1109I	GCAGC	4 cut(s)	198, 201, 297, 300
LweI	GCATC	1 cut(s)	126
MaeII	ACGT	4 cut(s)	113, 174, 204, 341
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	188, 398
MnlI	CCTC	5 cut(s)	65, 68, 182, 259, 301
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	173
MspI	CCGG	4 cut(s)	129, 152, 239, 248
MspR9I	CCNGG	6 cut(s)	32, 130, 239, 249, 281, 313
MvaI	CCWGG	3 cut(s)	32, 281, 313
MvnI	CGCG	6 cut(s)	63, 125, 149, 230, 256, 446
MwoI	GCNNNNNNNGC	7 cut(s)	20, 77, 206, 253, 285, 294, 297
NciI	CCSGG	3 cut(s)	130, 239, 249
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	3 cut(s)	76, 97, 172
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	324
NruI	TCGCGA	1 cut(s)	230
NspI	RCATGY	1 cut(s)	97
PaeI	GCATGC	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	8 cut(s)	127, 213, 216, 287, 290, 299, 302, 445
PleI	GAGTC	2 cut(s)	188, 397
PmaCI	CACGTG	1 cut(s)	175
PmlI	CACGTG	1 cut(s)	175
PpsI	GAGTC	2 cut(s)	188, 397
Ppu21I	YACGTR	2 cut(s)	175, 205
Psp6I	CCWGG	3 cut(s)	30, 279, 311
PspCI	CACGTG	1 cut(s)	175
PspGI	CCWGG	3 cut(s)	30, 279, 311
PspPI	GGNCC	5 cut(s)	13, 28, 34, 245, 277
RruI	TCGCGA	1 cut(s)	230
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	8 cut(s)	126, 212, 215, 286, 289, 298, 301, 444
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	5 cut(s)	13, 28, 34, 245, 277
SchI	GAGTC	2 cut(s)	188, 398
ScrFI	CCNGG	6 cut(s)	32, 130, 239, 249, 281, 313
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	5 cut(s)	116, 177, 207, 344, 464
SfaNI	GCATC	1 cut(s)	126
SgrAI	CRCCGGYG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	97
SsiI	CCGC	7 cut(s)	61, 125, 275, 297, 300, 303, 444
StyD4I	CCNGG	6 cut(s)	30, 128, 237, 247, 279, 311
StyI	CCWWGG	3 cut(s)	24, 37, 270
TaaI	ACNGT	5 cut(s)	330, 362, 385, 403, 427
TaiI	ACGT	4 cut(s)	116, 177, 207, 344
TaqI	TCGA	1 cut(s)	120
TauI	GCSGC	4 cut(s)	128, 300, 303, 446
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	3 cut(s)	333, 399, 458
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	4 cut(s)	211, 214, 285, 288
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	2 cut(s)	89, 197
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	3 cut(s)	333, 399, 458
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.