Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015810.1

Orthogroup ID

OG0024666

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 859

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015810.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 470 bp

ggcccatgcaggagatggcccacatcgccaagggccaggaccaaggcaactgcgtctccctcctccgcgccagagccatgaacgcaaaccaaaacagcatgctgatattacaagagacgtgcatcgacgcggccgggtcgcttgtggtgtacgcgccggttgatattccggccatgcacgtggtgatgaacggaggggactcggcctacgtggcgctgctgccctcggggttcgcgatagtccctgacgggccgggctcgcgtggctcggaggccaaggcgggccagggcagcagcaacggcggcggcggtgaggccagggtgagtgggtcactgttaacgatgacgtttcagatattggtcaacagtctgccgtcggcgaagttgaccgtggagtcggtggagactgtcaacaatctcatctcctgcaccgttcagaagatcaaggccgcgctccagtgcgagagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

155

Amino Acids

15.92

Weight (kDa)

5.24

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024666)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g12550
rosa_multiflora	Rmu_sc0015810.1_g000001 Rmu_sc0023668.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	393
AccII	CGCG	6 cut(s)	68, 130, 154, 235, 261, 451
AciI	CCGC	7 cut(s)	66, 130, 280, 302, 305, 308, 449
AcoI	YGGCCR	2 cut(s)	131, 170
AcvI	CACGTG	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	183
AfaI	GTAC	1 cut(s)	151
AjiI	CACGTC	1 cut(s)	119
AjnI	CCWGG	3 cut(s)	35, 284, 316
AluBI	AGCT	1 cut(s)	467
AluI	AGCT	1 cut(s)	467
Alw26I	GTCTC	3 cut(s)	60, 109, 397
Ama87I	CYCGRG	1 cut(s)	225
ApeKI	GCWGC	4 cut(s)	216, 219, 290, 293
AspLEI	GCGC	4 cut(s)	70, 156, 216, 453
AspS9I	GGNCC	6 cut(s)	2, 18, 33, 39, 250, 282
AsuC2I	CCSGG	2 cut(s)	135, 254
AsuHPI	GGTGA	3 cut(s)	195, 322, 333
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	259
BbrPI	CACGTG	1 cut(s)	180
BbvI	GCAGC	4 cut(s)	203, 206, 302, 305
BccI	CCATC	1 cut(s)	9
BceAI	ACGGC	2 cut(s)	315, 357
BciT130I	CCWGG	3 cut(s)	37, 286, 318
BcnI	CCSGG	2 cut(s)	135, 254
BcoDI	GTCTC	3 cut(s)	60, 109, 397
BfoI	RGCGCY	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	211
BisI	GCNGC	8 cut(s)	131, 217, 220, 291, 294, 303, 306, 449
BlsI	GCNGC	8 cut(s)	132, 218, 221, 292, 295, 304, 307, 450
Bme1390I	CCNGG	5 cut(s)	37, 135, 254, 286, 318
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	225
BmgBI	CACGTC	1 cut(s)	119
BmgT120I	GGNCC	6 cut(s)	2, 18, 33, 39, 250, 282
BmrFI	CCNGG	5 cut(s)	37, 135, 254, 286, 318
BmsI	GCATC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	439
BpuMI	CCSGG	2 cut(s)	135, 254
BsaAI	YACGTR	2 cut(s)	180, 210
BsaJI	CCNNGG	7 cut(s)	29, 42, 224, 275, 285, 317, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	456
BseBI	CCWGG	3 cut(s)	37, 286, 318
BseDI	CCNNGG	7 cut(s)	29, 42, 224, 275, 285, 317, 389
BseNI	ACTGG	1 cut(s)	456
BseRI	GAGGAG	1 cut(s)	52
BseX3I	CGGCCG	1 cut(s)	131
BseXI	GCAGC	4 cut(s)	203, 206, 302, 305
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	6 cut(s)	68, 130, 154, 235, 261, 451
Bsh1285I	CGRYCG	1 cut(s)	134
BsiEI	CGRYCG	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	4 cut(s)	134, 157, 169, 253
BslFI	GGGAC	2 cut(s)	211, 226
BsmAI	GTCTC	3 cut(s)	60, 109, 397
BsmBI	CGTCTC	2 cut(s)	60, 109
BsmFI	GGGAC	2 cut(s)	211, 226
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	440
Bsp68I	TCGCGA	1 cut(s)	235
BspACI	CCGC	7 cut(s)	66, 130, 280, 302, 305, 308, 449
BspFNI	CGCG	6 cut(s)	68, 130, 154, 235, 261, 451
BsrFI	RCCGGY	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	456
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	7 cut(s)	29, 42, 224, 275, 285, 317, 389
BssMI	GATC	1 cut(s)	440
BssT1I	CCWWGG	3 cut(s)	29, 42, 275
Bst2UI	CCWGG	3 cut(s)	37, 286, 318
Bst4CI	ACNGT	5 cut(s)	335, 367, 390, 408, 432
BstBAI	YACGTR	2 cut(s)	180, 210
BstC8I	GCNNGC	3 cut(s)	100, 259, 282
BstDSI	CCRYGG	1 cut(s)	389
BstFNI	CGCG	6 cut(s)	68, 130, 154, 235, 261, 451
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	4 cut(s)	70, 156, 216, 453
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	3 cut(s)	60, 109, 397
BstMBI	GATC	1 cut(s)	440
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	8 cut(s)	25, 82, 211, 258, 263, 290, 299, 302
BstNI	CCWGG	3 cut(s)	37, 286, 318
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	5 cut(s)	35, 133, 252, 284, 316
BstUI	CGCG	6 cut(s)	68, 130, 154, 235, 261, 451
BstV1I	GCAGC	4 cut(s)	203, 206, 302, 305
BstXI	CCANNNNNNTGG	1 cut(s)	180
BstZI	CGGCCG	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	389
BtgZI	GCGATG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	119
BtsIMutI	CAGTG	2 cut(s)	331, 463
BtuMI	TCGCGA	1 cut(s)	235
Cac8I	GCNNGC	3 cut(s)	100, 259, 282
CfoI	GCGC	4 cut(s)	70, 156, 216, 453
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	6 cut(s)	2, 18, 33, 39, 250, 282
CseI	GACGC	2 cut(s)	42, 136
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	4 cut(s)	6, 78, 99, 174
CviQI	GTAC	1 cut(s)	150
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
DraIII	CACNNNGTG	1 cut(s)	183
DrdI	GACNNNNNNGTC	1 cut(s)	393
DseDI	GACNNNNNNGTC	1 cut(s)	393
EaeI	YGGCCR	2 cut(s)	131, 170
EagI	CGGCCG	1 cut(s)	131
EclXI	CGGCCG	1 cut(s)	131
Eco130I	CCWWGG	3 cut(s)	29, 42, 275
Eco24I	GRGCYC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	39
Eco52I	CGGCCG	1 cut(s)	131
Eco72I	CACGTG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	225
EcoRII	CCWGG	3 cut(s)	35, 284, 316
EcoT14I	CCWWGG	3 cut(s)	29, 42, 275
EcoT38I	GRGCYC	1 cut(s)	259
ErhI	CCWWGG	3 cut(s)	29, 42, 275
Esp3I	CGTCTC	2 cut(s)	60, 109
FaeI	CATG	4 cut(s)	9, 81, 102, 177
FaiI	YATR	4 cut(s)	7, 79, 100, 175
FaqI	GGGAC	2 cut(s)	211, 226
FatI	CATG	4 cut(s)	5, 77, 98, 173
FauI	CCCGC	1 cut(s)	273
Fnu4HI	GCNGC	8 cut(s)	131, 217, 220, 291, 294, 303, 306, 449
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	8 cut(s)	131, 217, 220, 291, 294, 303, 306, 449
GlaI	GCGC	4 cut(s)	69, 155, 215, 452
GluI	GCNGC	8 cut(s)	131, 217, 220, 291, 294, 303, 306, 449
GsuI	CTGGAG	1 cut(s)	439
HaeII	RGCGCY	1 cut(s)	217
HapII	CCGG	4 cut(s)	134, 157, 169, 253
HgaI	GACGC	2 cut(s)	42, 136
HhaI	GCGC	4 cut(s)	70, 156, 216, 453
Hin1II	CATG	4 cut(s)	9, 81, 102, 177
Hin6I	GCGC	4 cut(s)	68, 154, 214, 451
HinP1I	GCGC	4 cut(s)	68, 154, 214, 451
HincII	GTYRAC	4 cut(s)	338, 363, 386, 411
HindII	GTYRAC	4 cut(s)	338, 363, 386, 411
HinfI	GANTC	2 cut(s)	199, 394
HpaI	GTTAAC	1 cut(s)	338
HpaII	CCGG	4 cut(s)	134, 157, 169, 253
HphI	GGTGA	3 cut(s)	195, 322, 333
Hpy166II	GTNNAC	5 cut(s)	150, 338, 363, 386, 411
Hpy188I	TCNGA	3 cut(s)	270, 353, 437
Hpy188III	TCNNGA	1 cut(s)	234
Hpy8I	GTNNAC	5 cut(s)	150, 338, 363, 386, 411
Hpy99I	CGWCG	2 cut(s)	130, 378
HpyCH4III	ACNGT	5 cut(s)	335, 367, 390, 408, 432
HpyCH4IV	ACGT	4 cut(s)	118, 179, 209, 346
HpyCH4V	TGCA	4 cut(s)	9, 122, 177, 428
HpyF10VI	GCNNNNNNNGC	8 cut(s)	25, 82, 211, 258, 263, 290, 299, 302
HpySE526I	ACGT	4 cut(s)	118, 179, 209, 346
Hsp92II	CATG	4 cut(s)	9, 81, 102, 177
HspAI	GCGC	4 cut(s)	68, 154, 214, 451
KspAI	GTTAAC	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	440
LmnI	GCTCC	1 cut(s)	458
Lsp1109I	GCAGC	4 cut(s)	203, 206, 302, 305
LweI	GCATC	1 cut(s)	131
MaeII	ACGT	4 cut(s)	118, 179, 209, 346
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	259
MlyI	GAGTC	2 cut(s)	193, 403
MnlI	CCTC	6 cut(s)	70, 73, 187, 234, 264, 306
MseI	TTAA	1 cut(s)	337
MslI	CAYNNNNRTG	1 cut(s)	178
MspI	CCGG	4 cut(s)	134, 157, 169, 253
MspR9I	CCNGG	5 cut(s)	37, 135, 254, 286, 318
MvaI	CCWGG	3 cut(s)	37, 286, 318
MvnI	CGCG	6 cut(s)	68, 130, 154, 235, 261, 451
MwoI	GCNNNNNNNGC	8 cut(s)	25, 82, 211, 258, 263, 290, 299, 302
NciI	CCSGG	2 cut(s)	135, 254
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	4 cut(s)	9, 81, 102, 177
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	329
NruI	TCGCGA	1 cut(s)	235
NspI	RCATGY	1 cut(s)	102
PaeI	GCATGC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PkrI	GCNGC	8 cut(s)	132, 218, 221, 292, 295, 304, 307, 450
PleI	GAGTC	2 cut(s)	193, 402
PmaCI	CACGTG	1 cut(s)	180
PmlI	CACGTG	1 cut(s)	180
PpsI	GAGTC	2 cut(s)	193, 402
Ppu21I	YACGTR	2 cut(s)	180, 210
Psp6I	CCWGG	3 cut(s)	35, 284, 316
PspCI	CACGTG	1 cut(s)	180
PspGI	CCWGG	3 cut(s)	35, 284, 316
PspPI	GGNCC	6 cut(s)	2, 18, 33, 39, 250, 282
RruI	TCGCGA	1 cut(s)	235
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	337
SatI	GCNGC	8 cut(s)	131, 217, 220, 291, 294, 303, 306, 449
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	6 cut(s)	2, 18, 33, 39, 250, 282
SchI	GAGTC	2 cut(s)	193, 403
ScrFI	CCNGG	5 cut(s)	37, 135, 254, 286, 318
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	5 cut(s)	121, 182, 212, 349, 469
SfaNI	GCATC	1 cut(s)	131
SinI	GGWCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	178
SphI	GCATGC	1 cut(s)	102
SsiI	CCGC	7 cut(s)	66, 130, 280, 302, 305, 308, 449
StyD4I	CCNGG	5 cut(s)	35, 133, 252, 284, 316
StyI	CCWWGG	3 cut(s)	29, 42, 275
TaaI	ACNGT	5 cut(s)	335, 367, 390, 408, 432
TaiI	ACGT	4 cut(s)	121, 182, 212, 349
TaqI	TCGA	1 cut(s)	125
TauI	GCSGC	4 cut(s)	133, 305, 308, 451
Tru1I	TTAA	1 cut(s)	337
Tru9I	TTAA	1 cut(s)	337
TscAI	CASTG	2 cut(s)	338, 463
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	4 cut(s)	216, 219, 290, 293
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	94, 202
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	338, 463
VpaK11BI	GGWCC	1 cut(s)	39
XceI	RCATGY	1 cut(s)	102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.