Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0022389

Physical Location & Seq

Genomic Coordinates Reverse (-)

716263 .. 717361

Gene Structure 1099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAAATCGCACAGGGCTTCGTTGATTTCTGTTAACTCCGACAACGACCAGTGTCATAAGAAGAAGGTGTTTGTGAAGTCGGTTTCAATGAAAAAGCAGGTTAATATTGACCATATCACAGGGGATAAAATCCCAATGAGCTTTGTGTTTTCCAGATGCAAGTTACCTGGTCCTCTGAAGCAGCTTCAAGCTGATTTGAGGAAACTGATGCTTCGCTACACTGCCCTTAAGCTTAAGGAGAAGAGGCGGAACAATCTTAAAGACTTTTTGAATCTGGCTGGGCCTATGGGGGTTACACATTTCCTCATGTTGTCGAAAACTCCAACTGCGCCATACCTTAGATCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043933 GO:0044085 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

117

Amino Acids

13.28

Weight (kDa)

10.4

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022389)

Species	Orthologous Gene IDs
malus_domestica	MD08G1232400.v1.1
pyrus_communis	pycom04g01110 pycom05g10150 pycom10g00690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
AciI	CCGC	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	197
AflII	CTTAAG	2 cut(s)	227, 233
AgsI	TTSAA	3 cut(s)	87, 188, 271
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	4 cut(s)	141, 184, 191, 232
AluI	AGCT	4 cut(s)	141, 184, 191, 232
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	2 cut(s)	170, 281
AvaII	GGWCC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	168
BfrI	CTTAAG	2 cut(s)	227, 233
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	170, 281
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	146, 198
BoxI	GACNNNNGTC	1 cut(s)	51
Bsa29I	ATCGAT	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	283
BshVI	ATCGAT	1 cut(s)	344
BsnI	GGCC	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	341, 345
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	283
BspDI	ATCGAT	1 cut(s)	344
BspMI	ACCTGC	1 cut(s)	88
BspTI	CTTAAG	2 cut(s)	227, 233
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	341, 345
Bst2UI	CCWGG	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	236
BstAFI	CTTAAG	2 cut(s)	227, 233
BstDEI	CTNAG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	2 cut(s)	344, 348
BstMBI	GATC	2 cut(s)	341, 345
BstNI	CCWGG	1 cut(s)	168
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	283
BsuTUI	ATCGAT	1 cut(s)	344
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	56, 219
BveI	ACCTGC	1 cut(s)	88
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	170, 281
ClaI	ATCGAT	1 cut(s)	344
CsiI	ACCWGGT	1 cut(s)	166
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	7 cut(s)	17, 141, 184, 191, 232, 278, 283
CviKI_1	RGCY	7 cut(s)	17, 141, 184, 191, 232, 278, 283
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	2 cut(s)	343, 347
DpnII	GATC	2 cut(s)	341, 345
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	166
FaeI	CATG	1 cut(s)	310
FaiI	YATR	5 cut(s)	57, 114, 287, 308, 334
FatI	CATG	1 cut(s)	306
Fnu4HI	GCNGC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	182
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	182
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	1 cut(s)	271
HpaI	GTTAAC	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	40, 177, 350
Hpy188III	TCNNGA	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	329
KspAI	GTTAAC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	341, 345
LpnPI	CCDG	8 cut(s)	62, 83, 105, 153, 166, 180, 260, 264
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	2 cut(s)	146, 198
MabI	ACCWGGT	1 cut(s)	166
MaeIII	GTNAC	2 cut(s)	162, 292
MalI	GATC	2 cut(s)	343, 347
MboI	GATC	2 cut(s)	341, 345
MboII	GAAGA	2 cut(s)	73, 253
MmeI	TCCRAC	2 cut(s)	63, 347
MnlI	CCTC	4 cut(s)	183, 192, 237, 314
MseI	TTAA	5 cut(s)	33, 102, 228, 234, 258
MspCI	CTTAAG	2 cut(s)	227, 233
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
NdeII	GATC	2 cut(s)	341, 345
NlaIII	CATG	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	183
PshAI	GACNNNNGTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	170, 281
SaqAI	TTAA	5 cut(s)	33, 102, 228, 234, 258
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	2 cut(s)	341, 345
Sau96I	GGNCC	2 cut(s)	170, 281
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	8 cut(s)	69, 102, 143, 169, 186, 193, 234, 339
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	146, 198
SinI	GGWCC	1 cut(s)	170
SmlI	CTYRAG	2 cut(s)	227, 233
SmoI	CTYRAG	2 cut(s)	227, 233
SsiI	CCGC	1 cut(s)	247
SspI	AATATT	1 cut(s)	106
StyD4I	CCNGG	1 cut(s)	166
TaqI	TCGA	2 cut(s)	314, 344
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	5 cut(s)	33, 102, 228, 234, 258
Tru9I	TTAA	5 cut(s)	33, 102, 228, 234, 258
TscAI	CASTG	2 cut(s)	56, 226
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	17, 104
TspRI	CASTG	2 cut(s)	56, 226
Vha464I	CTTAAG	2 cut(s)	227, 233
VpaK11BI	GGWCC	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.