pycom10g04090

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
4367792 .. 4368211
420 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
ATGTGCGAACATATATGCATGACTTACGGTTTACGGGCTGAAGGTGGTGGAGAGAAAAATGGGAAGGAGGGAATTACGGTAGGGATAATGGTTGGGAGTACTGTGGGAAAGTTTGGTGGCAGTGGAGGCAGTGTAACCTTAGGGATTGTAGTAGGGAAATTGGGAAGTGGAGGCAGCTGTGTCTGTGTGGAGCCGCCGCCGGTGGGATTAGGTAGAGATGGTATTGGCAAGTTTGGCAAGTTTGGCAAGTTAGGCAATGTGGGTTGTGGCAGAGGAAGGAAAGGTGGCAGTGTTGTGCCAGGTTTAGGCAAAGACGGTGCAGTCGTCGTCTGGAGAAGATTGCGAGCCGCTACGGAGACATGGATGCTTGAAGAACACAGGATAATGAACAAGATGGCAGCAAAGAAGCAGTGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.21

Weight (kDa)

9.66

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022457)

Species Orthologous Gene IDs
prunus_persica Prupe.8G068400_v2.0.a1
pyrus_communis pycom05g03880 pycom05g03890 pycom10g04090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AciI CCGC 3 cut(s) 194, 197, 348
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 203, 305
AgsI TTSAA 1 cut(s) 371
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 350
ApeKI GCWGC 2 cut(s) 174, 398
AxyI CCTNAGG 1 cut(s) 139
BbvI GCAGC 2 cut(s) 186, 410
BccI CCATC 2 cut(s) 212, 388
BciT130I CCWGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 350
BisI GCNGC 5 cut(s) 175, 194, 197, 348, 399
BlsI GCNGC 5 cut(s) 176, 195, 198, 349, 400
BmcAI AGTACT 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 305
Bse118I RCCGGY 1 cut(s) 199
Bse21I CCTNAGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 203, 305
BseMI GCAATG 1 cut(s) 262
BseXI GCAGC 2 cut(s) 186, 410
BsgI GTGCAG 1 cut(s) 339
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 203, 305
BsmAI GTCTC 1 cut(s) 350
BspACI CCGC 3 cut(s) 194, 197, 348
BspLI GGNNCC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 262
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 4 cut(s) 29, 79, 103, 317
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 350
BstMWI GCNNNNNNNGC 4 cut(s) 126, 234, 243, 252
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 186, 410
Bsu36I CCTNAGG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 369
BtsI GCAGTG 4 cut(s) 127, 136, 295, 416
BtsIMutI CAGTG 4 cut(s) 127, 136, 295, 416
Cac8I GCNNGC 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 199
Csp6I GTAC 1 cut(s) 99
CviAII CATG 2 cut(s) 19, 360
CviJI RGCY 4 cut(s) 38, 177, 193, 347
CviKI_1 RGCY 4 cut(s) 38, 177, 193, 347
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 1 cut(s) 139
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 60
Eco81I CCTNAGG 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 20
FaeI CATG 2 cut(s) 22, 363
FaiI YATR 5 cut(s) 12, 14, 16, 20, 361
FalI AAGNNNNNCTT 1 cut(s) 398
FatI CATG 2 cut(s) 18, 359
Fnu4HI GCNGC 5 cut(s) 175, 194, 197, 348, 399
FokI GGATG 1 cut(s) 376
Fsp4HI GCNGC 5 cut(s) 175, 194, 197, 348, 399
GluI GCNGC 5 cut(s) 175, 194, 197, 348, 399
GsuI CTGGAG 1 cut(s) 352
HapII CCGG 1 cut(s) 200
Hin1II CATG 2 cut(s) 22, 363
HpaII CCGG 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 32
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 35, 58, 270
HpyCH4III ACNGT 4 cut(s) 29, 79, 103, 317
HpyCH4V TGCA 2 cut(s) 18, 320
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 234, 243, 252
HpyF3I CTNAG 1 cut(s) 139
Hsp92II CATG 2 cut(s) 22, 363
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 213, 285, 312, 316, 364
Lsp1109I GCAGC 2 cut(s) 186, 410
LweI GCATC 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 133
MboII GAAGA 2 cut(s) 348, 383
MluCI AATT 2 cut(s) 72, 158
MnlI CCTC 4 cut(s) 61, 119, 164, 266
Mph1103I ATGCAT 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 4 cut(s) 126, 234, 243, 252
NlaIII CATG 2 cut(s) 22, 363
NlaIV GGNNCC 1 cut(s) 192
NsiI ATGCAT 1 cut(s) 20
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PkrI GCNGC 5 cut(s) 176, 195, 198, 349, 400
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 177
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SatI GCNGC 5 cut(s) 175, 194, 197, 348, 399
ScaI AGTACT 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 300
SetI ASST 6 cut(s) 46, 140, 179, 214, 286, 304
SfaNI GCATC 1 cut(s) 354
SgrAI CRCCGGYG 1 cut(s) 199
Sse9I AATT 2 cut(s) 72, 158
SsiI CCGC 3 cut(s) 194, 197, 348
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 4 cut(s) 29, 79, 103, 317
TasI AATT 2 cut(s) 72, 158
TatI WGTACW 1 cut(s) 98
TauI GCSGC 3 cut(s) 196, 199, 350
TscAI CASTG 4 cut(s) 127, 136, 295, 416
TseI GCWGC 2 cut(s) 174, 398
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 4 cut(s) 127, 136, 295, 416
ZrmI AGTACT 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.