Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0020434

Physical Location & Seq

Genomic Coordinates Reverse (-)

5549448 .. 5551788

Gene Structure 2341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g05180.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAATTTTTTCAATTTACCAAAACTGCCCCCTCCTTTCTCCTTTCTCCTTCTCCCGATCCTACACTCTGCACTCTCTCCTTCTCTGTTGCAAAAAACTCCCGCCGCTGCACTCTACACCCTTCTTCCCTCCCGCCGCTGCACCTCTTCCTCCTCCTCCTTTTCGTTTCTCTCCGTCACTCTCAACGGTTTGGCTGCTATTTTCTTTTGCTGCGTTGCAATTCTTCTTATCCCAGATTTTGTTTCTCGTAAAATTTCATACCCTTATTTTGGTTTTTCCATTTTTTCGATTTTGCCCTTTTCTCGCCTGTGTTCTCCTCTTCGTTTCCCTGTTCTCCTCTTCCTTCTTCTTCTCCTCCCATTCGTCGATTCGACTAGTTATCGTTGTTCACCGTCTATGGATAAATCTGTAATATTGTTGTATATCGCTGCCTTGGCAGCTTCGTTTCGATTAGTTTCTTCTTCTGCTCTCTGCCCTCACGAGTCCGATTTCTTCCGTTACAGCCTTCAATCTCAATGCCCCATCTCGATCTCCCCCCACCCACCCCTCAAGATCATCGCATCAGGTCCTTTTACCACAACAGACAACTTATTGTTTGAGCCTCTGAAAGAGCTTCTAGCATATGCAAGCAAAAAGCTGCCTCAGTTGCTTATATTGCTAGGACCATTTATTGATTCTGAACATCCAGAAATTAAGAAAGGAACAGTCGACAGGAGCTTTGATGAAATATTCCAAACTGAGATTCTTAGAAAGGTATGTTCTCCAAGCGTTGTCTTTTATCCTTTGTATCCACCAGCAGAAGACACTCCATTGGATTTTTCGCTTGCTCCCGAAGCTCTAAACATCTCATTGATCCCAGATATTCTCATCTTACCCTCTGACATGAAGTATTTTGTGAAGGTACTGAACCTAGGCGAAAGAGGTGAAGAGAAAGATCAGGTTAAATGCATTTGTGTCAATCCGGGAAGACTTGCCAAGGGAGAAGGAGGAGGTACTTTCGTCGAGCTTGAGTACTACGGTAATCCTGACACAACGAATGCTTCGATTGTAAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000228 GO:0000278 GO:0000428 GO:0000723 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005658 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0019725 GO:0022402 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032200 GO:0032201 GO:0032991 GO:0032993 GO:0033260 GO:0034641 GO:0034645 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0051276 GO:0055029 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_pol_E_B Pol_alpha_B_N

Protein Analysis

353

Amino Acids

38.91

Weight (kDa)

6.44

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020434)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g10010 pycom10g05180 pycom10g05320 pycom13g27440 pycom14g19450 pycom15g35990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	4 cut(s)	102, 105, 133, 136
AclWI	GGATC	2 cut(s)	52, 847
AcsI	RAATTY	2 cut(s)	4, 252
AfaI	GTAC	3 cut(s)	903, 994, 1013
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	13, 509
AhlI	ACTAGT	1 cut(s)	374
AjuI	GAANNNNNNNTTGG	2 cut(s)	726, 758
AluBI	AGCT	6 cut(s)	440, 613, 637, 717, 836, 1006
AluI	AGCT	6 cut(s)	440, 613, 637, 717, 836, 1006
AlwI	GGATC	2 cut(s)	52, 847
ApeKI	GCWGC	7 cut(s)	107, 138, 194, 210, 428, 437, 637
ApoI	RAATTY	2 cut(s)	4, 252
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
Asp700I	GAANNNNTTC	1 cut(s)	8
AspA2I	CCTAGG	1 cut(s)	910
AspS9I	GGNCC	2 cut(s)	566, 662
AsuC2I	CCSGG	1 cut(s)	963
AsuHPI	GGTGA	2 cut(s)	381, 935
AvaII	GGWCC	2 cut(s)	566, 662
AvrII	CCTAGG	1 cut(s)	910
BaeI	ACNNNNGTAYC	2 cut(s)	984, 1017
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	807, 973
BbvI	GCAGC	7 cut(s)	94, 125, 181, 197, 415, 449, 624
BccI	CCATC	1 cut(s)	530
BciVI	GTATCC	1 cut(s)	798
BcnI	CCSGG	1 cut(s)	963
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	4 cut(s)	375, 617, 659, 911
BfuI	GTATCC	1 cut(s)	798
BisI	GCNGC	9 cut(s)	105, 108, 136, 139, 195, 211, 429, 438, 638
BlnI	CCTAGG	1 cut(s)	910
BlsI	GCNGC	9 cut(s)	106, 109, 137, 140, 196, 212, 430, 439, 639
BmcAI	AGTACT	1 cut(s)	1013
Bme1390I	CCNGG	1 cut(s)	963
Bme18I	GGWCC	2 cut(s)	566, 662
BmgT120I	GGNCC	2 cut(s)	566, 662
BmrFI	CCNGG	1 cut(s)	963
BmsI	GCATC	1 cut(s)	569
BpiI	GAAGAC	2 cut(s)	807, 973
BpuEI	CTTGAG	2 cut(s)	533, 1028
BpuMI	CCSGG	1 cut(s)	963
BsaJI	CCNNGG	3 cut(s)	432, 910, 975
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	432, 910, 975
BseGI	GGATG	1 cut(s)	682
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	656, 729
BseRI	GAGGAG	6 cut(s)	142, 145, 306, 326, 344, 1002
BseXI	GCAGC	7 cut(s)	94, 125, 181, 197, 415, 449, 624
BsgI	GTGCAG	3 cut(s)	54, 93, 124
BsiSI	CCGG	1 cut(s)	962
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	1042
Bsp143I	GATC	5 cut(s)	57, 528, 552, 852, 934
BspACI	CCGC	4 cut(s)	102, 105, 133, 136
BspCNI	CTCAG	2 cut(s)	655, 730
BspPI	GGATC	2 cut(s)	52, 847
BssECI	CCNNGG	3 cut(s)	432, 910, 975
BssMI	GATC	5 cut(s)	57, 528, 552, 852, 934
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	3 cut(s)	432, 910, 975
Bst2BI	CACGAG	1 cut(s)	479
Bst4CI	ACNGT	4 cut(s)	188, 393, 706, 1019
Bst6I	CTCTTC	4 cut(s)	151, 324, 344, 921
BstC8I	GCNNGC	2 cut(s)	628, 825
BstDEI	CTNAG	3 cut(s)	642, 738, 746
BstF5I	GGATG	1 cut(s)	682
BstKTI	GATC	5 cut(s)	60, 531, 555, 855, 937
BstMBI	GATC	5 cut(s)	57, 528, 552, 852, 934
BstMWI	GCNNNNNNNGC	5 cut(s)	434, 437, 646, 655, 833
BstSCI	CCNGG	1 cut(s)	961
BstV1I	GCAGC	7 cut(s)	94, 125, 181, 197, 415, 449, 624
BstV2I	GAAGAC	2 cut(s)	807, 973
BsuI	GTATCC	1 cut(s)	798
BtgZI	GCGATG	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	682
Cac8I	GCNNGC	2 cut(s)	628, 825
Cfr13I	GGNCC	2 cut(s)	566, 662
Csp6I	GTAC	3 cut(s)	902, 993, 1012
CviAII	CATG	1 cut(s)	883
CviJI	RGCY	9 cut(s)	194, 440, 504, 601, 613, 637, 717, 836, 1006
CviKI_1	RGCY	9 cut(s)	194, 440, 504, 601, 613, 637, 717, 836, 1006
CviQI	GTAC	3 cut(s)	902, 993, 1012
DdeI	CTNAG	3 cut(s)	642, 738, 746
DpnI	GATC	5 cut(s)	59, 530, 554, 854, 936
DpnII	GATC	5 cut(s)	57, 528, 552, 852, 934
Eam1104I	CTCTTC	4 cut(s)	151, 324, 344, 921
EarI	CTCTTC	4 cut(s)	151, 324, 344, 921
Eco130I	CCWWGG	3 cut(s)	432, 910, 975
Eco47I	GGWCC	2 cut(s)	566, 662
EcoO109I	RGGNCCY	1 cut(s)	566
EcoT14I	CCWWGG	3 cut(s)	432, 910, 975
EcoT22I	ATGCAT	1 cut(s)	950
ErhI	CCWWGG	3 cut(s)	432, 910, 975
FaeI	CATG	1 cut(s)	886
FatI	CATG	1 cut(s)	882
FauI	CCCGC	2 cut(s)	109, 140
FauNDI	CATATG	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	9 cut(s)	105, 108, 136, 139, 195, 211, 429, 438, 638
FokI	GGATG	1 cut(s)	669
Fsp4HI	GCNGC	9 cut(s)	105, 108, 136, 139, 195, 211, 429, 438, 638
FspBI	CTAG	4 cut(s)	375, 617, 659, 911
GluI	GCNGC	9 cut(s)	105, 108, 136, 139, 195, 211, 429, 438, 638
HapII	CCGG	1 cut(s)	962
Hin1II	CATG	1 cut(s)	886
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	4 cut(s)	368, 482, 674, 742
HpaII	CCGG	1 cut(s)	962
HphI	GGTGA	2 cut(s)	381, 935
Hpy166II	GTNNAC	2 cut(s)	389, 709
Hpy188I	TCNGA	4 cut(s)	487, 606, 679, 880
Hpy188III	TCNNGA	7 cut(s)	55, 479, 526, 550, 686, 830, 1025
Hpy8I	GTNNAC	2 cut(s)	389, 709
Hpy99I	CGWCG	2 cut(s)	368, 1004
HpyAV	CCTTC	7 cut(s)	59, 90, 131, 353, 515, 892, 977
HpyCH4III	ACNGT	4 cut(s)	188, 393, 706, 1019
HpyCH4V	TGCA	7 cut(s)	71, 91, 110, 141, 218, 626, 948
HpyF10VI	GCNNNNNNNGC	5 cut(s)	434, 437, 646, 655, 833
HpyF3I	CTNAG	3 cut(s)	642, 738, 746
Hsp92II	CATG	1 cut(s)	886
Kzo9I	GATC	5 cut(s)	57, 528, 552, 852, 934
LmnI	GCTCC	2 cut(s)	714, 832
Lsp1109I	GCAGC	7 cut(s)	94, 125, 181, 197, 415, 449, 624
LweI	GCATC	1 cut(s)	569
MaeI	CTAG	4 cut(s)	375, 617, 659, 911
MaeIII	GTNAC	2 cut(s)	175, 497
MalI	GATC	5 cut(s)	59, 530, 554, 854, 936
MboI	GATC	5 cut(s)	57, 528, 552, 852, 934
MluCI	AATT	5 cut(s)	4, 13, 219, 252, 690
MlyI	GAGTC	1 cut(s)	491
Mph1103I	ATGCAT	1 cut(s)	950
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	693, 942
MspA1I	CMGCKG	2 cut(s)	107, 138
MspI	CCGG	1 cut(s)	962
MspR9I	CCNGG	1 cut(s)	963
Mva1269I	GAATGC	1 cut(s)	1042
MwoI	GCNNNNNNNGC	5 cut(s)	434, 437, 646, 655, 833
NciI	CCSGG	1 cut(s)	963
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	5 cut(s)	57, 528, 552, 852, 934
NlaIII	CATG	1 cut(s)	886
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	950
PcsI	WCGNNNNNNNCGW	1 cut(s)	1040
PctI	GAATGC	1 cut(s)	1042
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	368, 674, 742
PfoI	TCCNGGA	1 cut(s)	961
PkrI	GCNGC	9 cut(s)	106, 109, 137, 140, 196, 212, 430, 439, 639
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
PspPI	GGNCC	2 cut(s)	566, 662
PspPPI	RGGWCCY	1 cut(s)	566
RsaI	GTAC	3 cut(s)	903, 994, 1013
RsaNI	GTAC	3 cut(s)	902, 993, 1012
SalI	GTCGAC	1 cut(s)	707
SaqAI	TTAA	2 cut(s)	693, 942
SatI	GCNGC	9 cut(s)	105, 108, 136, 139, 195, 211, 429, 438, 638
Sau3AI	GATC	5 cut(s)	57, 528, 552, 852, 934
Sau96I	GGNCC	2 cut(s)	566, 662
ScaI	AGTACT	1 cut(s)	1013
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	963
SfaNI	GCATC	1 cut(s)	569
SinI	GGWCC	2 cut(s)	566, 662
SmlI	CTYRAG	2 cut(s)	548, 1007
SmoI	CTYRAG	2 cut(s)	548, 1007
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	5 cut(s)	4, 13, 219, 252, 690
SsiI	CCGC	4 cut(s)	102, 105, 133, 136
SspI	AATATT	2 cut(s)	414, 729
SspMI	CTAG	4 cut(s)	375, 617, 659, 911
StyD4I	CCNGG	1 cut(s)	961
StyI	CCWWGG	3 cut(s)	432, 910, 975
TaaI	ACNGT	4 cut(s)	188, 393, 706, 1019
TaqI	TCGA	8 cut(s)	287, 366, 371, 448, 527, 708, 1002, 1043
TasI	AATT	5 cut(s)	4, 13, 219, 252, 690
TatI	WGTACW	1 cut(s)	1011
TauI	GCSGC	2 cut(s)	107, 138
TfiI	GAWTC	3 cut(s)	368, 674, 742
Tru1I	TTAA	2 cut(s)	693, 942
Tru9I	TTAA	2 cut(s)	693, 942
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	7 cut(s)	107, 138, 194, 210, 428, 437, 637
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	4 cut(s)	17, 246, 738, 899
TspGWI	ACGGA	2 cut(s)	163, 485
VpaK11BI	GGWCC	2 cut(s)	566, 662
XapI	RAATTY	2 cut(s)	4, 252
XmaJI	CCTAGG	1 cut(s)	910
XmiI	GTMKAC	1 cut(s)	708
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	4 cut(s)	375, 617, 659, 911
ZrmI	AGTACT	1 cut(s)	1013
Zsp2I	ATGCAT	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.