Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0020434

Physical Location & Seq

Genomic Coordinates Reverse (-)

5650050 .. 5651378

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g05320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAATTTTTTCAATTTACCAAAACTGCCCCCTCCTTTCTCCTTTCTCTTTCTATCGATCCTACACTCTGCACTCTCTCCTTCTCTGTTGCAAAAAACTCCCGCCGCTGCACTCTACACCCCTCTTCCCTCTCGCCGCTGCACCTCTTCCTCCTCCTCCTTTTCATTTCTCTCCGTCACTCTCAACGGTTTGGCTGCTTTTTTCTTTTGCTGCGTTGCAATTCTTCTTATCCCAGATTTTGTTTCTCGTAAAATTTCATACCCTTATTTTGGTTTTTCCATTTTTTCGATTTTGCCCTTTTCTCGCCTGTGTTCTCCTCTTCGTTTCCCTGTTCTCCTCTTCCTTCTTCTTCTCCTCCCATTCGTCGATTCGACTAGTTATCGTTGTTCACCGTCTATGGATAAATCTGTAATATTGTTGTATATTGCTGCCTTGGCAGCTTCGTTTCGATTAGTTTCTTCTTCTGCTCTCTGCCCTCACGAGTCCGATTTCTTTCGTTACAGCCTTCAATCTCAATGCCCCATCTCGATCTCCCCCCACCCACCCCTCAAGCTTGGTGTGGATGCTGATTGTTTTCTTGGAACAAACTGCCTTCCTGTCCGTGTGATTGGAAAGGGAGGCCTTCTAGGGGGGAAGGTGTGGTTTGCATTGTCTTGTATGATGACCACCGAATGGCCATGGCTTTCTCTCTTGCTGCCTGTGGAGACGTTCCAGTTACTATCAAGGATCCCGGTTGTACCAGAAAAACATTCCCCGATTACTTTGAAGTCCTCAGGAAGTTTACCAAGCATTGAACAGCGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

269

Amino Acids

29.56

Weight (kDa)

9.18

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020434)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g10010 pycom10g05180 pycom10g05320 pycom13g27440 pycom14g19450 pycom15g35990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	805
AccB7I	CCANNNNNTGG	1 cut(s)	672
AciI	CCGC	4 cut(s)	102, 105, 136, 799
AclWI	GGATC	3 cut(s)	52, 721, 734
AcoI	YGGCCR	1 cut(s)	674
AcsI	RAATTY	2 cut(s)	4, 252
AfaI	GTAC	1 cut(s)	738
AfiI	CCNNNNNNNGG	3 cut(s)	269, 628, 672
AgsI	TTSAA	4 cut(s)	13, 509, 766, 794
AhlI	ACTAGT	1 cut(s)	374
AluBI	AGCT	2 cut(s)	440, 553
AluI	AGCT	2 cut(s)	440, 553
Alw26I	GTCTC	1 cut(s)	698
AlwI	GGATC	3 cut(s)	52, 721, 734
AoxI	GGCC	2 cut(s)	619, 674
ApeKI	GCWGC	7 cut(s)	107, 138, 194, 210, 428, 437, 694
ApoI	RAATTY	2 cut(s)	4, 252
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	1 cut(s)	381
AxyI	CCTNAGG	1 cut(s)	772
BalI	TGGCCA	1 cut(s)	676
BamHI	GGATCC	1 cut(s)	726
BauI	CACGAG	1 cut(s)	479
BbvI	GCAGC	7 cut(s)	94, 125, 181, 197, 415, 449, 681
BccI	CCATC	1 cut(s)	530
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	1 cut(s)	698
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	2 cut(s)	375, 626
BisI	GCNGC	9 cut(s)	105, 108, 136, 139, 195, 211, 429, 438, 695
BlsI	GCNGC	9 cut(s)	106, 109, 137, 140, 196, 212, 430, 439, 696
Bme1390I	CCNGG	1 cut(s)	731
BmiI	GGNNCC	1 cut(s)	728
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	1 cut(s)	553
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	731
Bsa29I	ATCGAT	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	432, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 628, 672
Bse1I	ACTGG	1 cut(s)	712
Bse21I	CCTNAGG	1 cut(s)	772
BseCI	ATCGAT	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	432, 677
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	3 cut(s)	269, 628, 672
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	1 cut(s)	712
BseRI	GAGGAG	5 cut(s)	142, 145, 306, 326, 344
BseXI	GCAGC	7 cut(s)	94, 125, 181, 197, 415, 449, 681
BsgI	GTGCAG	3 cut(s)	54, 93, 124
BshFI	GGCC	2 cut(s)	621, 676
BshVI	ATCGAT	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	731
BslI	CCNNNNNNNGG	3 cut(s)	269, 628, 672
BsmAI	GTCTC	1 cut(s)	698
BsmBI	CGTCTC	1 cut(s)	698
BsnI	GGCC	2 cut(s)	621, 676
Bsp143I	GATC	3 cut(s)	57, 528, 726
Bsp19I	CCATGG	1 cut(s)	677
BspACI	CCGC	4 cut(s)	102, 105, 136, 799
BspANI	GGCC	2 cut(s)	621, 676
BspCNI	CTCAG	1 cut(s)	785
BspDI	ATCGAT	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	728
BspPI	GGATC	3 cut(s)	52, 721, 734
BsrI	ACTGG	1 cut(s)	712
BssECI	CCNNGG	2 cut(s)	432, 677
BssMI	GATC	3 cut(s)	57, 528, 726
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	2 cut(s)	432, 677
Bst2BI	CACGAG	1 cut(s)	479
Bst4CI	ACNGT	2 cut(s)	188, 393
Bst6I	CTCTTC	4 cut(s)	129, 151, 324, 344
BstDEI	CTNAG	1 cut(s)	772
BstDSI	CCRYGG	1 cut(s)	677
BstF5I	GGATG	1 cut(s)	568
BstKTI	GATC	3 cut(s)	60, 531, 729
BstMAI	GTCTC	1 cut(s)	698
BstMBI	GATC	3 cut(s)	57, 528, 726
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 437
BstSCI	CCNGG	1 cut(s)	729
BstV1I	GCAGC	7 cut(s)	94, 125, 181, 197, 415, 449, 681
BstX2I	RGATCY	1 cut(s)	726
BstYI	RGATCY	1 cut(s)	726
Bsu15I	ATCGAT	1 cut(s)	56
Bsu36I	CCTNAGG	1 cut(s)	772
BsuRI	GGCC	2 cut(s)	621, 676
BsuTUI	ATCGAT	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	677
BtsCI	GGATG	1 cut(s)	568
ClaI	ATCGAT	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	737
CviAII	CATG	1 cut(s)	678
CviJI	RGCY	7 cut(s)	194, 440, 504, 553, 621, 676, 682
CviKI_1	RGCY	7 cut(s)	194, 440, 504, 553, 621, 676, 682
CviQI	GTAC	1 cut(s)	737
DdeI	CTNAG	1 cut(s)	772
DpnI	GATC	3 cut(s)	59, 530, 728
DpnII	GATC	3 cut(s)	57, 528, 726
EaeI	YGGCCR	1 cut(s)	674
Eam1104I	CTCTTC	4 cut(s)	129, 151, 324, 344
EarI	CTCTTC	4 cut(s)	129, 151, 324, 344
Eco130I	CCWWGG	2 cut(s)	432, 677
Eco147I	AGGCCT	1 cut(s)	621
Eco81I	CCTNAGG	1 cut(s)	772
EcoT14I	CCWWGG	2 cut(s)	432, 677
ErhI	CCWWGG	2 cut(s)	432, 677
Esp3I	CGTCTC	1 cut(s)	698
FaeI	CATG	1 cut(s)	681
FaiI	YATR	6 cut(s)	259, 398, 423, 659, 679, 805
FatI	CATG	1 cut(s)	677
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	9 cut(s)	105, 108, 136, 139, 195, 211, 429, 438, 695
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	9 cut(s)	105, 108, 136, 139, 195, 211, 429, 438, 695
FspBI	CTAG	2 cut(s)	375, 626
GluI	GCNGC	9 cut(s)	105, 108, 136, 139, 195, 211, 429, 438, 695
HaeIII	GGCC	2 cut(s)	621, 676
HapII	CCGG	1 cut(s)	731
Hin1II	CATG	1 cut(s)	681
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	2 cut(s)	368, 482
HpaII	CCGG	1 cut(s)	731
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	2 cut(s)	389, 782
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	3 cut(s)	479, 526, 774
Hpy8I	GTNNAC	2 cut(s)	389, 782
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	6 cut(s)	90, 353, 515, 602, 628, 632
HpyCH4III	ACNGT	2 cut(s)	188, 393
HpyCH4IV	ACGT	1 cut(s)	707
HpyCH4V	TGCA	6 cut(s)	71, 91, 110, 141, 218, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 437
HpyF3I	CTNAG	1 cut(s)	772
HpySE526I	ACGT	1 cut(s)	707
Hsp92II	CATG	1 cut(s)	681
Kzo9I	GATC	3 cut(s)	57, 528, 726
LpnPI	CCDG	9 cut(s)	246, 320, 342, 609, 711, 725, 744, 753, 759
Lsp1109I	GCAGC	7 cut(s)	94, 125, 181, 197, 415, 449, 681
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	2 cut(s)	375, 626
MaeII	ACGT	1 cut(s)	707
MaeIII	GTNAC	3 cut(s)	175, 497, 714
MalI	GATC	3 cut(s)	59, 530, 728
MboI	GATC	3 cut(s)	57, 528, 726
MboII	GAAGA	9 cut(s)	116, 138, 215, 311, 331, 338, 341, 450, 453
MflI	RGATCY	1 cut(s)	726
MlsI	TGGCCA	1 cut(s)	676
MluCI	AATT	4 cut(s)	4, 13, 219, 252
MluNI	TGGCCA	1 cut(s)	676
MlyI	GAGTC	1 cut(s)	491
Mox20I	TGGCCA	1 cut(s)	676
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	676
Msp20I	TGGCCA	1 cut(s)	676
MspA1I	CMGCKG	3 cut(s)	107, 138, 799
MspI	CCGG	1 cut(s)	731
MspR9I	CCNGG	1 cut(s)	731
MwoI	GCNNNNNNNGC	2 cut(s)	434, 437
NciI	CCSGG	1 cut(s)	731
NcoI	CCATGG	1 cut(s)	677
NdeII	GATC	3 cut(s)	57, 528, 726
NlaIII	CATG	1 cut(s)	681
NlaIV	GGNNCC	1 cut(s)	728
NmuCI	GTSAC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	672
PkrI	GCNGC	9 cut(s)	106, 109, 137, 140, 196, 212, 430, 439, 696
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PsiI	TTATAA	1 cut(s)	805
PspN4I	GGNNCC	1 cut(s)	728
PsuI	RGATCY	1 cut(s)	726
RsaI	GTAC	1 cut(s)	738
RsaNI	GTAC	1 cut(s)	737
SatI	GCNGC	9 cut(s)	105, 108, 136, 139, 195, 211, 429, 438, 695
Sau3AI	GATC	3 cut(s)	57, 528, 726
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	731
SetI	ASST	5 cut(s)	146, 442, 555, 639, 710
SfaNI	GCATC	1 cut(s)	553
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	4 cut(s)	4, 13, 219, 252
SseBI	AGGCCT	1 cut(s)	621
SsiI	CCGC	4 cut(s)	102, 105, 136, 799
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	2 cut(s)	375, 626
StuI	AGGCCT	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	2 cut(s)	432, 677
TaaI	ACNGT	2 cut(s)	188, 393
TaiI	ACGT	1 cut(s)	710
TaqI	TCGA	6 cut(s)	56, 287, 366, 371, 448, 527
TasI	AATT	4 cut(s)	4, 13, 219, 252
TauI	GCSGC	2 cut(s)	107, 138
TfiI	GAWTC	1 cut(s)	368
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	7 cut(s)	107, 138, 194, 210, 428, 437, 694
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	17, 153, 246
TspGWI	ACGGA	2 cut(s)	163, 590
Van91I	CCANNNNNTGG	1 cut(s)	672
XapI	RAATTY	2 cut(s)	4, 252
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	375, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.