Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0020434

Physical Location & Seq

Genomic Coordinates Reverse (-)

36098958 .. 36099945

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g35990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTTCTTCTTCTGGTGCATCTACAGCTTCCAGAAGCCGCTTATTTTTCCAAAACGCGGAGCTACAGTACCCAATTAATGAATTTTTTCAATTTACCAAAACTGCCCCCTCCTTTCTCCTTTCTCCTTGTCTCGATCCTACACTCTGCACTCTCTCCTTCTCTGTTGCAAAAAACTCCCGCCGCTGCACTCTACACCCCTCTTCCCTCCCGCCGCTGCACCTCTTCCTCCTCCTCCTTTTCGTTTCTCTCCGTCACTCTCAACGCCACACCGCCGTCGCCTTCCAGGGTTTGGCTGCTATTTTCTTTTGCTGTGTTGCAATTCTTCTTATCCCAGATTTTGTTTCTCATAAAATTTCATACCCTTATTTTGGTTTTTCCATTTTTTCGATTTTGCCCTTTTCTCGCCTGTGTTCTCCTCTTCGTTTCCCTGTTCTCCTCTTCCTTCTTCTTCTCCTCCCATTCGTCGATTCGACTAGGTATCGTTGTTCACCGTCTATGGATAAATCTGTAATATTGTTGTATATCGCTGCCTTGGCAGCTTCGTTTCGATTAGTTTCTTCTTCTGCTCTCTGCCCTCACGAGTCCGATTTCTTCCGTTACAGCCTTCAATCTCAATGCCCCATCTCGATCTCCCCCCACCCACCCCTCAAGGTGTGTTTTACACTTCCGATTTCTTACATAACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006950 GO:0008150 GO:0009987 GO:0012505 GO:0016853 GO:0016860 GO:0016864 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

231

Amino Acids

25.74

Weight (kDa)

9.11

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020434)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g10010 pycom10g05180 pycom10g05320 pycom13g27440 pycom14g19450 pycom15g35990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccII	CGCG	1 cut(s)	59
AciI	CCGC	7 cut(s)	40, 59, 181, 184, 212, 215, 273
AclWI	GGATC	1 cut(s)	131
AcsI	RAATTY	2 cut(s)	83, 354
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	3 cut(s)	58, 292, 371
AgsI	TTSAA	2 cut(s)	92, 611
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	3 cut(s)	29, 64, 542
AluI	AGCT	3 cut(s)	29, 64, 542
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	131
ApeKI	GCWGC	5 cut(s)	186, 217, 296, 530, 539
ApoI	RAATTY	2 cut(s)	83, 354
AseI	ATTAAT	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	483
BauI	CACGAG	1 cut(s)	581
BbvI	GCAGC	5 cut(s)	173, 204, 283, 517, 551
BccI	CCATC	1 cut(s)	632
BceAI	ACGGC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	2 cut(s)	24, 65
BisI	GCNGC	8 cut(s)	40, 184, 187, 215, 218, 297, 531, 540
BlsI	GCNGC	8 cut(s)	41, 185, 188, 216, 219, 298, 532, 541
Bme1390I	CCNGG	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	635
BsaJI	CCNNGG	2 cut(s)	286, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 292, 371
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	286, 534
BseLI	CCNNNNNNNGG	3 cut(s)	58, 292, 371
BseRI	GAGGAG	5 cut(s)	221, 224, 408, 428, 446
BseXI	GCAGC	5 cut(s)	173, 204, 283, 517, 551
BsgI	GTGCAG	3 cut(s)	133, 172, 203
Bsh1236I	CGCG	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	58, 292, 371
BsmAI	GTCTC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	136, 630
BspACI	CCGC	7 cut(s)	40, 59, 181, 184, 212, 215, 273
BspFNI	CGCG	1 cut(s)	59
BspPI	GGATC	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	286, 534
BssMI	GATC	2 cut(s)	136, 630
BssSI	CACGAG	1 cut(s)	581
BssT1I	CCWWGG	1 cut(s)	534
Bst2BI	CACGAG	1 cut(s)	581
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	69, 495
Bst6I	CTCTTC	4 cut(s)	208, 230, 426, 446
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	2 cut(s)	139, 633
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	2 cut(s)	136, 630
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 536, 539
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	2 cut(s)	24, 65
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	5 cut(s)	173, 204, 283, 517, 551
Csp6I	GTAC	1 cut(s)	70
CviJI	RGCY	7 cut(s)	5, 29, 39, 64, 296, 542, 606
CviKI_1	RGCY	7 cut(s)	5, 29, 39, 64, 296, 542, 606
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	2 cut(s)	138, 632
DpnII	GATC	2 cut(s)	136, 630
Eam1104I	CTCTTC	4 cut(s)	208, 230, 426, 446
EarI	CTCTTC	4 cut(s)	208, 230, 426, 446
Eco130I	CCWWGG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaiI	YATR	5 cut(s)	351, 361, 500, 525, 683
FauI	CCCGC	2 cut(s)	188, 219
Fnu4HI	GCNGC	8 cut(s)	40, 184, 187, 215, 218, 297, 531, 540
Fsp4HI	GCNGC	8 cut(s)	40, 184, 187, 215, 218, 297, 531, 540
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	8 cut(s)	40, 184, 187, 215, 218, 297, 531, 540
HinfI	GANTC	2 cut(s)	470, 584
HphI	GGTGA	1 cut(s)	483
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	2 cut(s)	589, 672
Hpy188III	TCNNGA	4 cut(s)	33, 134, 581, 628
Hpy8I	GTNNAC	1 cut(s)	491
Hpy99I	CGWCG	2 cut(s)	281, 470
HpyAV	CCTTC	4 cut(s)	169, 292, 455, 617
HpyCH4III	ACNGT	2 cut(s)	69, 495
HpyCH4V	TGCA	6 cut(s)	20, 150, 170, 189, 220, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 536, 539
Kzo9I	GATC	2 cut(s)	136, 630
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	6 cut(s)	46, 272, 299, 348, 422, 444
Lsp1109I	GCAGC	5 cut(s)	173, 204, 283, 517, 551
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	2 cut(s)	254, 599
MalI	GATC	2 cut(s)	138, 632
MboI	GATC	2 cut(s)	136, 630
MluCI	AATT	5 cut(s)	75, 83, 92, 321, 354
MlyI	GAGTC	1 cut(s)	593
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	2 cut(s)	78, 691
MspA1I	CMGCKG	2 cut(s)	186, 217
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	3 cut(s)	26, 536, 539
NdeII	GATC	2 cut(s)	136, 630
NmuCI	GTSAC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	470
PflMI	CCANNNNNTGG	1 cut(s)	292
PkrI	GCNGC	8 cut(s)	41, 185, 188, 216, 219, 298, 532, 541
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PshBI	ATTAAT	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	78, 691
SatI	GCNGC	8 cut(s)	40, 184, 187, 215, 218, 297, 531, 540
Sau3AI	GATC	2 cut(s)	136, 630
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	287
SetI	ASST	6 cut(s)	31, 66, 225, 482, 544, 657
SfaNI	GCATC	1 cut(s)	29
SfcI	CTRYAG	2 cut(s)	24, 65
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	5 cut(s)	75, 83, 92, 321, 354
SsiI	CCGC	7 cut(s)	40, 59, 181, 184, 212, 215, 273
SspI	AATATT	1 cut(s)	516
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	2 cut(s)	69, 495
TaqI	TCGA	6 cut(s)	135, 389, 468, 473, 550, 629
TasI	AATT	5 cut(s)	75, 83, 92, 321, 354
TauI	GCSGC	3 cut(s)	42, 186, 217
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	2 cut(s)	78, 691
Tru9I	TTAA	2 cut(s)	78, 691
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	5 cut(s)	186, 217, 296, 530, 539
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	96, 348
TspGWI	ACGGA	2 cut(s)	242, 587
Van91I	CCANNNNNTGG	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	2 cut(s)	83, 354
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.