pycom10g13180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0018762
Physical Location & Seq
Reverse (-)
16657289 .. 16657582
294 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 294 bp
ATGTTGAGGAGAGGTGGTGTCACCATATCTATTCTGTCGAACTCCACCGTGTTGGTTGGCTGGTGCCGGCCACGGAGGCGGCTGAAAAGACGGAGAGGCATCACCGTGTGGCTAGGGAACAAGCGGCGAGGGTTCAGCCTAGGGTCGCGGCCGGTGTTACAATGGGGGGCGGTGTCCCGCTCCATTCGGATGATAAAGAAGATGTTCATGGAGATGGTGCCTAGTGAAAGGTGGATAGAAGCTTACAATTGGTCTCTGCCAATTTTACGTCCCCAAATGTTTCCTCTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.43

Weight (kDa)

12.0

Isoelectric Point (pI)

100.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018762)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07425
prunus_persica Prupe.8G191500_v2.0.a1
pyrus_communis pycom10g13180
rosa_chinensis RchiOBHm_Chr6g0283141
rosa_roxburghii Rroxscaffold_7G00185740
rosa_samantha Rh6BG267400 Rh6CG266400 Rh6DG259700
rosa_wichuraiana Rw6G022890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 63, 217
AccBSI CCGCTC 1 cut(s) 180
AccII CGCG 1 cut(s) 148
AciI CCGC 5 cut(s) 79, 124, 148, 170, 178
AcoI YGGCCR 2 cut(s) 68, 149
AdeI CACNNNGTG 1 cut(s) 108
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 258
AoxI GGCC 2 cut(s) 68, 149
Asp700I GAANNNNTTC 1 cut(s) 203
AspA2I CCTAGG 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 13, 94
AvrII CCTAGG 1 cut(s) 139
BanI GGYRCC 2 cut(s) 63, 217
BccI CCATC 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 3 cut(s) 113, 140, 222
BglI GCCNNNNNGGC 1 cut(s) 76
BisI GCNGC 3 cut(s) 80, 125, 149
BlnI CCTAGG 1 cut(s) 139
BlsI GCNGC 3 cut(s) 81, 126, 150
BmiI GGNNCC 2 cut(s) 65, 219
BmsI GCATC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 71, 139
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bse118I RCCGGY 2 cut(s) 66, 151
BseDI CCNNGG 2 cut(s) 71, 139
BseGI GGATG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 22
BseX3I CGGCCG 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 148
Bsh1285I CGRYCG 1 cut(s) 152
BshFI GGCC 2 cut(s) 70, 151
BshNI GGYRCC 2 cut(s) 63, 217
BsiEI CGRYCG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 67, 152
BslFI GGGAC 2 cut(s) 160, 255
BsmAI GTCTC 1 cut(s) 258
BsmFI GGGAC 2 cut(s) 160, 255
BsnI GGCC 2 cut(s) 70, 151
Bso31I GGTCTC 1 cut(s) 258
BspACI CCGC 5 cut(s) 79, 124, 148, 170, 178
BspANI GGCC 2 cut(s) 70, 151
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 65, 219
BspT107I GGYRCC 2 cut(s) 63, 217
BspTNI GGTCTC 1 cut(s) 258
BsrBI CCGCTC 1 cut(s) 180
BsrFI RCCGGY 2 cut(s) 66, 151
BssAI RCCGGY 2 cut(s) 66, 151
BssECI CCNNGG 2 cut(s) 71, 139
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 49, 106
BstC8I GCNNGC 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 258
BstMCI CGRYCG 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstUI CGCG 1 cut(s) 148
BstXI CCANNNNNNTGG 1 cut(s) 52
BstZI CGGCCG 1 cut(s) 149
BsuRI GGCC 2 cut(s) 70, 151
BtgI CCRYGG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 68
Cfr10I RCCGGY 2 cut(s) 66, 151
CviAII CATG 1 cut(s) 208
CviJI RGCY 7 cut(s) 60, 70, 82, 112, 138, 151, 242
CviKI_1 RGCY 7 cut(s) 60, 70, 82, 112, 138, 151, 242
DraIII CACNNNGTG 1 cut(s) 108
EaeI YGGCCR 2 cut(s) 68, 149
EagI CGGCCG 1 cut(s) 149
EclXI CGGCCG 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 258
Eco52I CGGCCG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 211
FaiI YATR 2 cut(s) 26, 209
FaqI GGGAC 2 cut(s) 160, 255
FatI CATG 1 cut(s) 207
FauI CCCGC 1 cut(s) 185
Fnu4HI GCNGC 3 cut(s) 80, 125, 149
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 3 cut(s) 80, 125, 149
FspBI CTAG 3 cut(s) 113, 140, 222
GluI GCNGC 3 cut(s) 80, 125, 149
HaeIII GGCC 2 cut(s) 70, 151
HapII CCGG 2 cut(s) 67, 152
Hin1II CATG 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 240
HpaII CCGG 2 cut(s) 67, 152
HphI GGTGA 2 cut(s) 13, 94
Hpy188I TCNGA 1 cut(s) 189
HpyCH4III ACNGT 2 cut(s) 49, 106
HpyCH4IV ACGT 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 1 cut(s) 211
KroI GCCGGC 1 cut(s) 66
KroNI GCCGGC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 3 cut(s) 46, 80, 165
LweI GCATC 1 cut(s) 108
MaeI CTAG 3 cut(s) 113, 140, 222
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 19, 156
MbiI CCGCTC 1 cut(s) 180
MboII GAAGA 1 cut(s) 211
MfeI CAATTG 1 cut(s) 247
MluCI AATT 2 cut(s) 247, 261
MnlI CCTC 5 cut(s) 5, 69, 89, 122, 294
MroNI GCCGGC 1 cut(s) 66
MroXI GAANNNNTTC 1 cut(s) 203
MslI CAYNNNNRTG 3 cut(s) 104, 188, 212
MspI CCGG 2 cut(s) 67, 152
MunI CAATTG 1 cut(s) 247
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 76
NaeI GCCGGC 1 cut(s) 68
NgoMIV GCCGGC 1 cut(s) 66
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 2 cut(s) 65, 219
NmuCI GTSAC 1 cut(s) 19
PdiI GCCGGC 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 203
PkrI GCNGC 3 cut(s) 81, 126, 150
PspN4I GGNNCC 2 cut(s) 65, 219
RseI CAYNNNNRTG 3 cut(s) 104, 188, 212
SatI GCNGC 3 cut(s) 80, 125, 149
SetI ASST 4 cut(s) 16, 233, 244, 271
SfaNI GCATC 1 cut(s) 108
SmiMI CAYNNNNRTG 3 cut(s) 104, 188, 212
Sse9I AATT 2 cut(s) 247, 261
SsiI CCGC 5 cut(s) 79, 124, 148, 170, 178
SspMI CTAG 3 cut(s) 113, 140, 222
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 2 cut(s) 49, 106
TaiI ACGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 38
TasI AATT 2 cut(s) 247, 261
TauI GCSGC 3 cut(s) 82, 127, 151
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 2 cut(s) 88, 106
XmaJI CCTAGG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 3 cut(s) 113, 140, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.