pycom10g14690

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0024669
Physical Location & Seq
Forward (+)
18080330 .. 18081011
682 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGTTGGAGTTACTTAACCAGTTGGATGGTTTTGATTCAAGAGGAGATGTCAAGGTTATTCTGGCAACAAACAGAATTGAAAGCCTTGACCCAGCCTTGCTTCGTCCTGGCCGAATAGATAGGAAGATTGAATTCCCTCTTCCTGATATCAAAACAAGGAGGCGCATTTTCCAGATTCACACATCAAGGATGACGTTGGCTGATGATGTCAACTTGGAAGAGTTTGTCATGACCAAGGATGAGTTTTCCGGGGCTGATATCAAGGCTATATGTACGGAAGCTGGTTTGCTTGCTTTAAGAGAGCGCCGTATGAAGGTGACGCACACGGACTTCAAGAAGGCGAAGGAAAAGGTGATGTTCAAGAAGAAAGAAGGGGTTCCAGAAGGACTTTATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203
Pfam Domains
Protein Families
AAA

Protein Analysis

133

Amino Acids

15.22

Weight (kDa)

9.07

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 3 - 47 3.7e-10 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 69 - 113 6.4e-13 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024669)

Species Orthologous Gene IDs
pyrus_communis pycom10g14690
rosa_multiflora Rmu_sc0000284.1_g000005
rosa_samantha Rh4CG160300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 5 cut(s) 39, 80, 131, 334, 361
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
AoxI GGCC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 375
AspLEI GCGC 2 cut(s) 165, 306
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 328, 364
BccI CCATC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 1 cut(s) 108
BcnI CCSGG 1 cut(s) 250
BfoI RGCGCY 1 cut(s) 307
Bme1390I CCNGG 2 cut(s) 108, 250
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 2 cut(s) 108, 250
BpuMI CCSGG 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 234, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 234, 249
BseGI GGATG 3 cut(s) 31, 195, 244
BseLI CCNNNNNNNGG 1 cut(s) 313
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 57
BseYI CCCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 111
BspANI GGCC 1 cut(s) 111
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 378
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 234, 249
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 108
Bst6I CTCTTC 2 cut(s) 144, 213
BstC8I GCNNGC 1 cut(s) 291
BstF5I GGATG 3 cut(s) 31, 195, 244
BstH2I RGCGCY 1 cut(s) 307
BstHHI GCGC 2 cut(s) 165, 306
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 2 cut(s) 106, 248
BstXI CCANNNNNNTGG 1 cut(s) 26
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 3 cut(s) 31, 195, 244
Cac8I GCNNGC 1 cut(s) 291
CciI TCATGA 1 cut(s) 228
CfoI GCGC 2 cut(s) 165, 306
CseI GACGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 273
CviAII CATG 1 cut(s) 229
CviJI RGCY 7 cut(s) 84, 95, 111, 200, 254, 266, 281
CviKI_1 RGCY 7 cut(s) 84, 95, 111, 200, 254, 266, 281
CviQI GTAC 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 144, 213
EarI CTCTTC 2 cut(s) 144, 213
Eco130I CCWWGG 1 cut(s) 234
Eco32I GATATC 2 cut(s) 148, 259
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 106
EcoRV GATATC 2 cut(s) 148, 259
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 232
FaiI YATR 6 cut(s) 230, 269, 271, 311, 393, 395
FatI CATG 1 cut(s) 228
FokI GGATG 3 cut(s) 38, 202, 251
GlaI GCGC 2 cut(s) 164, 305
GsaI CCCAGC 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 307
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 249
HgaI GACGC 1 cut(s) 328
HhaI GCGC 2 cut(s) 165, 306
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 2 cut(s) 163, 304
HinP1I GCGC 2 cut(s) 163, 304
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 2 cut(s) 35, 175
HpaII CCGG 1 cut(s) 249
HphI GGTGA 2 cut(s) 328, 364
Hpy166II GTNNAC 1 cut(s) 211
Hpy188III TCNNGA 7 cut(s) 39, 143, 172, 229, 334, 361, 380
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 5 cut(s) 307, 331, 337, 365, 377
HpyCH4IV ACGT 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 2 cut(s) 163, 304
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 9, 316
MboII GAAGA 4 cut(s) 131, 136, 230, 376
MluCI AATT 2 cut(s) 75, 131
MnlI CCTC 3 cut(s) 35, 147, 153
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 2 cut(s) 15, 296
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 108, 250
MvaI CCWGG 1 cut(s) 108
NciI CCSGG 1 cut(s) 250
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 316
PagI TCATGA 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 2 cut(s) 35, 175
Psp6I CCWGG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 378
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 15, 296
ScrFI CCNGG 2 cut(s) 108, 250
SetI ASST 5 cut(s) 57, 197, 283, 318, 354
Sse9I AATT 2 cut(s) 75, 131
StyD4I CCNGG 2 cut(s) 106, 248
StyI CCWWGG 1 cut(s) 234
TaiI ACGT 1 cut(s) 197
TasI AATT 2 cut(s) 75, 131
TfiI GAWTC 2 cut(s) 35, 175
Tru1I TTAA 2 cut(s) 15, 296
Tru9I TTAA 2 cut(s) 15, 296
TseFI GTSAC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 326
TspGWI ACGGA 2 cut(s) 290, 341
XapI RAATTY 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.