Rmu_sc0000284.1_g000005

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000284.1
OG0024669
Physical Location & Seq
Reverse (-)
24781 .. 25098
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000284.1_g000005.1.cds

Sequence Viewer

Length: 204 bp
atgacgttggctgacgatgttaacctagaagaattcatcatgactaaagatgagttctctggggctgatagaaaggctatatgcactgaagctggtctgcttgcactgagaaagcggcgaatgaaggtgacacatgcagacttcaagaaggccaaggagaaggttatgtttaagaagaaggaaggtgttccagatatgaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203
Pfam Domains
Protein Families
AAA

Protein Analysis

67

Amino Acids

7.68

Weight (kDa)

9.17

Isoelectric Point (pI)

24.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024669)

Species Orthologous Gene IDs
pyrus_communis pycom10g14690
rosa_multiflora Rmu_sc0000284.1_g000005
rosa_samantha Rh4CG160300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
AoxI GGCC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 139
BfaI CTAG 2 cut(s) 26, 202
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 98
BshFI GGCC 1 cut(s) 152
BsnI GGCC 1 cut(s) 152
BspACI CCGC 1 cut(s) 115
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 137
BsuRI GGCC 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 84, 104
Cac8I GCNNGC 1 cut(s) 102
CciI TCATGA 1 cut(s) 39
CviAII CATG 2 cut(s) 40, 134
CviJI RGCY 5 cut(s) 11, 65, 77, 92, 152
CviKI_1 RGCY 5 cut(s) 11, 65, 77, 92, 152
DdeI CTNAG 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 2 cut(s) 43, 137
FaiI YATR 6 cut(s) 41, 80, 82, 135, 167, 197
FatI CATG 2 cut(s) 39, 133
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 2 cut(s) 26, 202
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 152
Hin1II CATG 2 cut(s) 43, 137
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HpaI GTTAAC 1 cut(s) 22
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 22
Hpy188III TCNNGA 3 cut(s) 40, 145, 191
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 5 cut(s) 118, 142, 154, 172, 176
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 3 cut(s) 84, 104, 137
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 2 cut(s) 43, 137
KspAI GTTAAC 1 cut(s) 22
LpnPI CCDG 2 cut(s) 45, 78
MaeI CTAG 2 cut(s) 26, 202
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 127
MboII GAAGA 2 cut(s) 41, 187
MluCI AATT 1 cut(s) 32
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 2 cut(s) 21, 171
NlaIII CATG 2 cut(s) 43, 137
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 1 cut(s) 137
PagI TCATGA 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 117
SaqAI TTAA 2 cut(s) 21, 171
SatI GCNGC 1 cut(s) 116
SetI ASST 6 cut(s) 8, 27, 94, 129, 165, 187
SgeI CNNG 8 cut(s) 38, 52, 72, 105, 113, 146, 157, 166
Sse9I AATT 1 cut(s) 32
SsiI CCGC 1 cut(s) 115
SspMI CTAG 2 cut(s) 26, 202
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 1 cut(s) 8
TasI AATT 1 cut(s) 32
TauI GCSGC 1 cut(s) 118
Tru1I TTAA 2 cut(s) 21, 171
Tru9I TTAA 2 cut(s) 21, 171
TscAI CASTG 2 cut(s) 91, 111
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 25, 137
TspRI CASTG 2 cut(s) 91, 111
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 2 cut(s) 26, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.