Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0024669

Physical Location & Seq

Genomic Coordinates Reverse (-)

35157149 .. 35157433

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG160300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGATGGTTTTGAGGGTAACACTGGTATCATTGTGGTTGCAGCAACTAACAGGGCAGATATTCTTGACTCTGCCTTGTTGAGGCCTGGCCGGTTTGACAGGCAGGTGTCTGTTGATGTTCCAGACATACGTGGCAGAACAGATATCTTGAAGGTTCATGCTAGCAATAAAAAGTTTGAGGGAAATGTTTCCCTTGATGTAGTTGCTATGAGGACACCTGGTTTTAGTGGAGCAGATCTTGCCAACCTCCTAAATGAGGCAGCTATATTGGTTGGTCGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

94

Amino Acids

10.08

Weight (kDa)

6.55

Isoelectric Point (pI)

18.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	1 - 39	3e-07	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	62 - 91	2.6e-10	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024669)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g14690
rosa_multiflora	Rmu_sc0000284.1_g000005
rosa_samantha	Rh4CG160300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	94
Acc36I	ACCTGC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	88
AfiI	CCNNNNNNNGG	2 cut(s)	81, 256
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	85, 217
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
AoxI	GGCC	2 cut(s)	83, 88
ApeKI	GCWGC	2 cut(s)	41, 260
Asp700I	GAANNNNTTC	1 cut(s)	187
AsuNHI	GCTAGC	1 cut(s)	161
BaeI	ACNNNNGTAYC	2 cut(s)	10, 43
BbvI	GCAGC	2 cut(s)	53, 272
BciT130I	CCWGG	2 cut(s)	87, 219
BfaI	CTAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	94
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	2 cut(s)	42, 261
BlsI	GCNGC	2 cut(s)	43, 262
Bme1390I	CCNGG	2 cut(s)	87, 219
BmrFI	CCNGG	2 cut(s)	87, 219
BmtI	GCTAGC	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 256
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	28
BseBI	CCWGG	2 cut(s)	87, 219
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	81, 256
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	53, 272
BshFI	GGCC	2 cut(s)	85, 90
BsiSI	CCGG	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	81, 256
BsnI	GGCC	2 cut(s)	85, 90
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	2 cut(s)	85, 90
BspMI	ACCTGC	1 cut(s)	94
BspOI	GCTAGC	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	90
BssMI	GATC	1 cut(s)	235
Bst2UI	CCWGG	2 cut(s)	87, 219
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	163
BstENI	CCTNNNNNAGG	2 cut(s)	79, 254
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	2 cut(s)	87, 219
BstSCI	CCNGG	2 cut(s)	85, 217
BstV1I	GCAGC	2 cut(s)	53, 272
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	85, 90
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	21
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	90
CsiI	ACCWGGT	1 cut(s)	217
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	3 cut(s)	85, 90, 263
CviKI_1	RGCY	3 cut(s)	85, 90, 263
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	2 cut(s)	79, 254
EcoRII	CCWGG	2 cut(s)	85, 217
EcoRV	GATATC	1 cut(s)	145
FaeI	CATG	1 cut(s)	161
FaiI	YATR	4 cut(s)	128, 159, 209, 266
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	42, 261
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	42, 261
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	2 cut(s)	42, 261
HaeIII	GGCC	2 cut(s)	85, 90
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	3 cut(s)	65, 122, 148
HpyAV	CCTTC	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	2 cut(s)	53, 272
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MflI	RGATCY	1 cut(s)	235
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	7 cut(s)	7, 75, 172, 204, 250, 257, 273
MroXI	GAANNNNTTC	1 cut(s)	187
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	2 cut(s)	87, 219
MvaI	CCWGG	2 cut(s)	87, 219
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	1 cut(s)	235
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	161
PaqCI	CACCTGC	1 cut(s)	94
PceI	AGGCCT	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	43, 262
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Ppu21I	YACGTR	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	85, 217
PspGI	CCWGG	2 cut(s)	85, 217
PsuI	RGATCY	1 cut(s)	235
SatI	GCNGC	2 cut(s)	42, 261
Sau3AI	GATC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	87, 219
SetI	ASST	7 cut(s)	108, 133, 156, 220, 249, 265, 284
SexAI	ACCWGGT	1 cut(s)	217
SseBI	AGGCCT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	2 cut(s)	85, 217
TaiI	ACGT	1 cut(s)	133
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	2 cut(s)	41, 260
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	28
XagI	CCTNNNNNAGG	2 cut(s)	79, 254
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.