Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0024228

Physical Location & Seq

Genomic Coordinates Reverse (-)

21177301 .. 21178569

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGTAGGCGGGTTGAAAAAGCCGATGTTGAATGCCTCTGCCATTGCTAAGATTGTTGAGGTTGTGAAGAGGTGGAAATGGGGGCCTGAATTGGAGACCCAATTAGACAAACTCCAATTTGTGCCAAACATGACTCACATTACTCAAGCCTTGAAGGTTATTAAGGATGGCGATGGTGCTTTGAGTTTGTTTCGATGGGCTAAGAGGCAACCGTGGTATTTGCCGAGTGATGAGTGTTATGTGGTGTTGTTTGATGGCCTAAACCAAAGTAAGGACTTCAATGGAATCCAATCCTTGTTTGATGAAATGGTGCAGGATTCAGGTAGTAGTGGGGTTTTGTCATCTGGTGCATATAATCATGTCATTCAGTTCTTGGCTAAAGCAGATAAAATGGAGGTGGCATTTTGTTACTTTAAGAAGATTCAAGATTCGGGTTTTGAAGTTGATACTCAGACATATAATTCGCTTATATTGCTGTTTCTAAATAAGGGTTTGCCTTTAAGGCATTTGAGATATATGAGAGCATGCAAGCTGCAAGCTGCAAGCTGTTCATTAGATGGATCAACCTACGAGTTGATGGTACCAAACTTGGCGAAATTGGGCCGCCTTGATGCTGCATTTAAGCTCTTCCAAGAAAGGAAAGAAAGGAGCTTTAAACCCAGCTTTAATGTCTTTGCATCACTTGTTGATTCAATGGGAAAAGCTGGGTGGTTGGACACGTCGATGAAGTTATACATGGAAATGCAGGGCTATGGTTTCAGGCCATCCGCTCCCATGTACCTTTCTATGATTGAGTCATATGTAAAGGCTGGCAAATTAGATGCTGCCCTTAGGCTTTGGGATGAGATGAAGAAAGCGGGCTTTAAGCCTAACTTTGGGTTGTACACAATGATTGTTGAGTCCCATGCAAAATCAGGGAAACTTGATACTGCAATGTCTACCTTTACTGATATGGAGAAGGCTGGATTTCTACCCACTCCTTCGACATATATGTGTCTATTGGAAATGCATGCTGCCTCTGGACAAGTAGATTCTGCTATGAAGCTGTATAACTCAATGACCAATGCAGGTTTAAGACCAGGTCTATGTACTTACACATCTCTTTTGATGCTTTTGGCTAATAAGAAGCTTGTGGACATGGCTGCCAAGATTTTGCTTGATATGAAGGCCATGGGTTATTCTGTTGATATGAGCGCTAGCGATGTTTTAATGGTGTATATCAAGGAGGGTTCCGTTGATGTAGCACTTCATGGGCTCATCAGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

423

Amino Acids

47.13

Weight (kDa)

8.75

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	116 - 157	5.6e-08	PPR repeat family
PPR_long	PF17177	194 - 342	1.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	244 - 299	8.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	259 - 291	2.4e-08	PPR repeat family
PPR	PF01535	259 - 288	1.9e-07	PPR repeat
PPR_long	PF17177	275 - 410	3.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	280 - 336	3.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	295 - 335	4.5e-06	PPR repeat family
PPR_2	PF13041	328 - 371	4.9e-09	PPR repeat family
TPR_24	PF23276	329 - 404	4.3e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024228)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213600.v1.1
pyrus_communis	pycom10g18030
rosa_multiflora	Rmu_co8174666.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1058
Acc65I	GGTACC	1 cut(s)	580
AccB1I	GGYRCC	1 cut(s)	580
AccBSI	CCGCTC	1 cut(s)	770
AccI	GTMKAC	1 cut(s)	938
AciI	CCGC	4 cut(s)	9, 604, 768, 857
AclWI	GGATC	1 cut(s)	568
AfaI	GTAC	4 cut(s)	582, 779, 884, 1090
AfeI	AGCGCT	1 cut(s)	1195
AfiI	CCNNNNNNNGG	2 cut(s)	271, 875
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	7 cut(s)	16, 31, 154, 280, 425, 440, 693
AjiI	CACGTC	1 cut(s)	720
AjnI	CCWGG	1 cut(s)	1078
AluBI	AGCT	9 cut(s)	532, 539, 546, 625, 651, 663, 704, 1045, 1129
AluI	AGCT	9 cut(s)	532, 539, 546, 625, 651, 663, 704, 1045, 1129
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	568
Aor51HI	AGCGCT	1 cut(s)	1195
AoxI	GGCC	5 cut(s)	83, 256, 601, 761, 1167
ApeKI	GCWGC	6 cut(s)	532, 539, 614, 824, 1013, 1142
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
Asp718I	GGTACC	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	1196
AspS9I	GGNCC	2 cut(s)	83, 601
AsuNHI	GCTAGC	1 cut(s)	1196
AxyI	CCTNAGG	1 cut(s)	830
BanI	GGYRCC	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	1257
BbvI	GCAGC	6 cut(s)	519, 526, 601, 811, 1000, 1129
BccI	CCATC	7 cut(s)	161, 167, 189, 248, 551, 571, 772
BciT130I	CCWGG	1 cut(s)	1080
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	1197
BfoI	RGCGCY	1 cut(s)	1197
BfuAI	ACCTGC	1 cut(s)	1058
BglI	GCCNNNNNGGC	1 cut(s)	502
BisI	GCNGC	7 cut(s)	533, 540, 604, 615, 825, 1014, 1143
BlsI	GCNGC	7 cut(s)	534, 541, 605, 616, 826, 1015, 1144
Bme1390I	CCNGG	1 cut(s)	1080
BmgBI	CACGTC	1 cut(s)	720
BmgT120I	GGNCC	2 cut(s)	83, 601
BmiI	GGNNCC	3 cut(s)	84, 582, 1231
BmrFI	CCNGG	1 cut(s)	1080
BmsI	GCATC	4 cut(s)	601, 686, 811, 1098
BmtI	GCTAGC	1 cut(s)	1200
BpuEI	CTTGAG	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	212, 1170
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 875
Bse21I	CCTNAGG	1 cut(s)	830
Bse3DI	GCAATG	2 cut(s)	42, 939
BseBI	CCWGG	1 cut(s)	1080
BseDI	CCNNGG	2 cut(s)	212, 1170
BseGI	GGATG	3 cut(s)	172, 764, 847
BseLI	CCNNNNNNNGG	2 cut(s)	271, 875
BseMI	GCAATG	2 cut(s)	42, 939
BseMII	CTCAG	1 cut(s)	464
BseXI	GCAGC	6 cut(s)	519, 526, 601, 811, 1000, 1129
BseYI	CCCAGC	2 cut(s)	659, 704
BsgI	GTGCAG	1 cut(s)	332
BshFI	GGCC	5 cut(s)	85, 258, 603, 763, 1169
BshNI	GGYRCC	1 cut(s)	580
BslFI	GGGAC	1 cut(s)	886
BslI	CCNNNNNNNGG	2 cut(s)	271, 875
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	886
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	5 cut(s)	85, 258, 603, 763, 1169
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	1257
Bsp1407I	TGTACA	1 cut(s)	882
Bsp143I	GATC	1 cut(s)	560
Bsp19I	CCATGG	1 cut(s)	1170
BspACI	CCGC	4 cut(s)	9, 604, 768, 857
BspANI	GGCC	5 cut(s)	85, 258, 603, 763, 1169
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	84, 582, 1231
BspMI	ACCTGC	1 cut(s)	1058
BspOI	GCTAGC	1 cut(s)	1200
BspPI	GGATC	1 cut(s)	568
BspQI	GCTCTTC	1 cut(s)	632
BspT107I	GGYRCC	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	770
BsrDI	GCAATG	2 cut(s)	42, 939
BsrGI	TGTACA	1 cut(s)	882
BssECI	CCNNGG	2 cut(s)	212, 1170
BssMI	GATC	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	1170
Bst2UI	CCWGG	1 cut(s)	1080
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	2 cut(s)	62, 632
BstAUI	TGTACA	1 cut(s)	882
BstC8I	GCNNGC	8 cut(s)	526, 530, 537, 544, 811, 859, 1011, 1198
BstDEI	CTNAG	4 cut(s)	48, 201, 450, 830
BstDSI	CCRYGG	2 cut(s)	212, 1170
BstF5I	GGATG	3 cut(s)	172, 764, 847
BstH2I	RGCGCY	1 cut(s)	1197
BstHHI	GCGC	1 cut(s)	1196
BstKTI	GATC	1 cut(s)	563
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	560
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 502
BstNI	CCWGG	1 cut(s)	1080
BstNSI	RCATGY	2 cut(s)	528, 1013
BstSCI	CCNGG	1 cut(s)	1078
BstV1I	GCAGC	6 cut(s)	519, 526, 601, 811, 1000, 1129
Bsu36I	CCTNAGG	1 cut(s)	830
BsuRI	GGCC	5 cut(s)	85, 258, 603, 763, 1169
BtgI	CCRYGG	2 cut(s)	212, 1170
BtgZI	GCGATG	2 cut(s)	186, 1215
BtrI	CACGTC	1 cut(s)	720
BtsCI	GGATG	3 cut(s)	172, 764, 847
BveI	ACCTGC	1 cut(s)	1058
Cac8I	GCNNGC	8 cut(s)	526, 530, 537, 544, 811, 859, 1011, 1198
CfoI	GCGC	1 cut(s)	1196
Cfr13I	GGNCC	2 cut(s)	83, 601
CsiI	ACCWGGT	1 cut(s)	1078
Csp6I	GTAC	4 cut(s)	581, 778, 883, 1089
CviQI	GTAC	4 cut(s)	581, 778, 883, 1089
DdeI	CTNAG	4 cut(s)	48, 201, 450, 830
DpnI	GATC	1 cut(s)	562
DpnII	GATC	1 cut(s)	560
DraI	TTTAAA	1 cut(s)	655
Eam1104I	CTCTTC	2 cut(s)	62, 632
EarI	CTCTTC	2 cut(s)	62, 632
Eco130I	CCWWGG	1 cut(s)	1170
Eco24I	GRGCYC	1 cut(s)	1257
Eco31I	GGTCTC	1 cut(s)	89
Eco47III	AGCGCT	1 cut(s)	1195
Eco81I	CCTNAGG	1 cut(s)	830
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	1078
EcoT14I	CCWWGG	1 cut(s)	1170
EcoT22I	ATGCAT	1 cut(s)	1011
EcoT38I	GRGCYC	1 cut(s)	1257
ErhI	CCWWGG	1 cut(s)	1170
FalI	AAGNNNNNCTT	2 cut(s)	857, 889
FaqI	GGGAC	1 cut(s)	886
FauI	CCCGC	2 cut(s)	2, 850
FauNDI	CATATG	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	938
Fnu4HI	GCNGC	7 cut(s)	533, 540, 604, 615, 825, 1014, 1143
FokI	GGATG	3 cut(s)	179, 751, 854
FriOI	GRGCYC	1 cut(s)	1257
Fsp4HI	GCNGC	7 cut(s)	533, 540, 604, 615, 825, 1014, 1143
FspBI	CTAG	1 cut(s)	1197
GlaI	GCGC	1 cut(s)	1195
GluI	GCNGC	7 cut(s)	533, 540, 604, 615, 825, 1014, 1143
GsaI	CCCAGC	2 cut(s)	663, 708
HaeII	RGCGCY	1 cut(s)	1197
HaeIII	GGCC	5 cut(s)	85, 258, 603, 763, 1169
HhaI	GCGC	1 cut(s)	1196
Hin6I	GCGC	1 cut(s)	1194
HinP1I	GCGC	1 cut(s)	1194
HindIII	AAGCTT	1 cut(s)	1127
HinfI	GANTC	9 cut(s)	133, 285, 317, 421, 428, 689, 794, 899, 1031
Hpy166II	GTNNAC	3 cut(s)	885, 939, 1135
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	2 cut(s)	425, 1020
Hpy8I	GTNNAC	3 cut(s)	885, 939, 1135
Hpy99I	CGWCG	1 cut(s)	724
HpyAV	CCTTC	4 cut(s)	148, 952, 990, 1159
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	1 cut(s)	719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 502
HpyF3I	CTNAG	4 cut(s)	48, 201, 450, 830
HpySE526I	ACGT	1 cut(s)	719
HspAI	GCGC	1 cut(s)	1194
KpnI	GGTACC	1 cut(s)	584
Kzo9I	GATC	1 cut(s)	560
LguI	GCTCTTC	1 cut(s)	632
LmnI	GCTCC	2 cut(s)	648, 775
Lsp1109I	GCAGC	6 cut(s)	519, 526, 601, 811, 1000, 1129
LweI	GCATC	4 cut(s)	601, 686, 811, 1098
MabI	ACCWGGT	1 cut(s)	1078
MaeI	CTAG	1 cut(s)	1197
MaeII	ACGT	1 cut(s)	719
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	1 cut(s)	562
MbiI	CCGCTC	1 cut(s)	770
MboI	GATC	1 cut(s)	560
MboII	GAAGA	4 cut(s)	79, 430, 619, 862
MhlI	GDGCHC	1 cut(s)	1257
MluCI	AATT	6 cut(s)	89, 101, 116, 460, 596, 815
MlyI	GAGTC	3 cut(s)	127, 803, 908
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	7 cut(s)	46, 52, 63, 198, 388, 1027, 1219
Mph1103I	ATGCAT	1 cut(s)	1011
MseI	TTAA	9 cut(s)	162, 414, 500, 621, 654, 666, 864, 1073, 1208
MslI	CAYNNNNRTG	3 cut(s)	722, 740, 991
MspR9I	CCNGG	1 cut(s)	1080
Mva1269I	GAATGC	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	1080
MwoI	GCNNNNNNNGC	2 cut(s)	472, 502
NcoI	CCATGG	1 cut(s)	1170
NdeI	CATATG	1 cut(s)	799
NdeII	GATC	1 cut(s)	560
NheI	GCTAGC	1 cut(s)	1196
NlaIV	GGNNCC	3 cut(s)	84, 582, 1231
NmeAIII	GCCGAG	1 cut(s)	249
NsiI	ATGCAT	1 cut(s)	1011
NspI	RCATGY	2 cut(s)	528, 1013
PaeI	GCATGC	2 cut(s)	528, 1013
PciSI	GCTCTTC	1 cut(s)	632
PctI	GAATGC	1 cut(s)	37
PfeI	GAWTC	6 cut(s)	285, 317, 421, 428, 689, 1031
PflFI	GACNNNGTC	1 cut(s)	1080
PkrI	GCNGC	7 cut(s)	534, 541, 605, 616, 826, 1015, 1144
PleI	GAGTC	3 cut(s)	127, 802, 907
PpsI	GAGTC	3 cut(s)	127, 802, 907
Psp6I	CCWGG	1 cut(s)	1078
PspFI	CCCAGC	2 cut(s)	659, 704
PspGI	CCWGG	1 cut(s)	1078
PspN4I	GGNNCC	3 cut(s)	84, 582, 1231
PspPI	GGNCC	2 cut(s)	83, 601
PsyI	GACNNNGTC	1 cut(s)	1080
RsaI	GTAC	4 cut(s)	582, 779, 884, 1090
RsaNI	GTAC	4 cut(s)	581, 778, 883, 1089
RseI	CAYNNNNRTG	3 cut(s)	722, 740, 991
SapI	GCTCTTC	1 cut(s)	632
SaqAI	TTAA	9 cut(s)	162, 414, 500, 621, 654, 666, 864, 1073, 1208
SatI	GCNGC	7 cut(s)	533, 540, 604, 615, 825, 1014, 1143
Sau3AI	GATC	1 cut(s)	560
Sau96I	GGNCC	2 cut(s)	83, 601
SchI	GAGTC	3 cut(s)	127, 803, 908
ScrFI	CCNGG	1 cut(s)	1080
SduI	GDGCHC	1 cut(s)	1257
SexAI	ACCWGGT	1 cut(s)	1078
SfaNI	GCATC	4 cut(s)	601, 686, 811, 1098
SmiMI	CAYNNNNRTG	3 cut(s)	722, 740, 991
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
SphI	GCATGC	2 cut(s)	528, 1013
Sse9I	AATT	6 cut(s)	89, 101, 116, 460, 596, 815
SsiI	CCGC	4 cut(s)	9, 604, 768, 857
SspMI	CTAG	1 cut(s)	1197
StyD4I	CCNGG	1 cut(s)	1078
StyI	CCWWGG	1 cut(s)	1170
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	1 cut(s)	722
TaqI	TCGA	3 cut(s)	193, 722, 983
TasI	AATT	6 cut(s)	89, 101, 116, 460, 596, 815
TatI	WGTACW	2 cut(s)	882, 1088
TauI	GCSGC	1 cut(s)	606
TfiI	GAWTC	6 cut(s)	285, 317, 421, 428, 689, 1031
Tru1I	TTAA	9 cut(s)	162, 414, 500, 621, 654, 666, 864, 1073, 1208
Tru9I	TTAA	9 cut(s)	162, 414, 500, 621, 654, 666, 864, 1073, 1208
TseI	GCWGC	6 cut(s)	532, 539, 614, 824, 1013, 1142
TspDTI	ATGAA	7 cut(s)	318, 540, 740, 863, 1055, 1178, 1238
TspGWI	ACGGA	1 cut(s)	1222
Tth111I	GACNNNGTC	1 cut(s)	1080
XceI	RCATGY	2 cut(s)	528, 1013
XmiI	GTMKAC	1 cut(s)	938
XspI	CTAG	1 cut(s)	1197
Zsp2I	ATGCAT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.