Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8174666.1

Orthogroup ID

OG0024228

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 678

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8174666.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 475 bp

ctctgggttttcaagattaaatctttctgaaactccattatctgttgggtgtgcttttgttagaaattactcttctgggaagaacagtgatgagtggactgaggaaattgagtatttggatgaatcaggaagtgttatttacactgggaaaggtataaggtctgtcgagccggggctcgatgaccatgtgatggtgggtggtttgaaaaagccgcttctgaacgcctctgcgattgctaagattgttgaggttgtgaagaggtggaaatgggggcctgagttggagacccaattggacaaactccaatttgtgccaaacatgactcacattactcaagcattgaaggtgattaatgatagtgaagggtctttgagtttgtttcgatgggctaagaggcaaccttggtatttgccaagtgatgagtgttatgtcttattgtttgatggcctgaatgaaagtagggactttgatggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

158

Amino Acids

17.77

Weight (kDa)

4.96

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024228)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213600.v1.1
pyrus_communis	pycom10g18030
rosa_multiflora	Rmu_co8174666.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	191
AciI	CCGC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	13, 206, 344
Alw26I	GTCTC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	273, 446
AseI	ATTAAT	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	178
BccI	CCATC	4 cut(s)	185, 379, 438, 465
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	279
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	171, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	171, 402
BseGI	GGATG	1 cut(s)	125
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	91, 268
BseNI	ACTGG	1 cut(s)	149
BshFI	GGCC	2 cut(s)	275, 448
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	275, 448
Bso31I	GGTCTC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	2 cut(s)	275, 448
BspCNI	CTCAG	2 cut(s)	92, 269
BspLI	GGNNCC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	171, 402
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	2 cut(s)	77, 252
BstDEI	CTNAG	4 cut(s)	100, 238, 277, 391
BstF5I	GGATG	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	275, 448
BtsCI	GGATG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	92, 142
Cfr13I	GGNCC	1 cut(s)	273
CviAII	CATG	2 cut(s)	186, 320
CviJI	RGCY	6 cut(s)	170, 176, 212, 275, 390, 448
CviKI_1	RGCY	6 cut(s)	170, 176, 212, 275, 390, 448
DdeI	CTNAG	4 cut(s)	100, 238, 277, 391
Eam1104I	CTCTTC	2 cut(s)	77, 252
EarI	CTCTTC	2 cut(s)	77, 252
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	2 cut(s)	189, 323
FaiI	YATR	4 cut(s)	156, 187, 321, 430
FatI	CATG	2 cut(s)	185, 319
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	132
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	275, 448
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	2 cut(s)	189, 323
HinfI	GANTC	2 cut(s)	123, 323
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	29, 220
Hpy188III	TCNNGA	2 cut(s)	13, 127
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	338, 357
HpyCH4III	ACNGT	1 cut(s)	87
HpyF3I	CTNAG	4 cut(s)	100, 238, 277, 391
Hsp92II	CATG	2 cut(s)	189, 323
LpnPI	CCDG	6 cut(s)	61, 112, 130, 184, 289, 462
MboII	GAAGA	3 cut(s)	64, 92, 269
MfeI	CAATTG	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	4 cut(s)	65, 106, 291, 306
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	5 cut(s)	95, 236, 242, 253, 388
MseI	TTAA	2 cut(s)	18, 352
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	172
MunI	CAATTG	1 cut(s)	291
NciI	CCSGG	1 cut(s)	172
NlaIII	CATG	2 cut(s)	189, 323
NlaIV	GGNNCC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PshBI	ATTAAT	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	18, 352
SatI	GCNGC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	6 cut(s)	155, 162, 253, 264, 349, 404
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	4 cut(s)	65, 106, 291, 306
SsiI	CCGC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	166, 178, 383
TasI	AATT	4 cut(s)	65, 106, 291, 306
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	2 cut(s)	18, 352
Tru9I	TTAA	2 cut(s)	18, 352
TscAI	CASTG	2 cut(s)	92, 149
TspDTI	ATGAA	2 cut(s)	136, 469
TspRI	CASTG	2 cut(s)	92, 149
Van91I	CCANNNNNTGG	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.