Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0024127

Physical Location & Seq

Genomic Coordinates Reverse (-)

24635926 .. 24637993

Gene Structure 2068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTGGACGCTCGGCCAGTTACGCCTGGACAGGTGTCATTTTTGCTTGGAATCATCCCAGTTTTTGTCACATGGATATATTCAGAGTACTTGGAGTATAAAAAATCTTCAATTCCTCCTAAAGTTCATTCAGATACTAATCTTGTTGAGTTGGGAGAGGAGACAATCAAGGAAGATGATCGAGCTGTTTTGCTGGAAGGAGGCCTTTCAAGATCAGCATCTACAAAGTTTAATAGTTCATCCATCAAAATAAATTTAATCAGGTTTGTGAATATGGATGACTCTTTTCTACTTGAAAACAGAGCAACTCTTAGAGTGATGTCTGAGCTTGGGGCAATTCTGTTCTATTTTTTCACATGTGACCGCACAAATATACTGGGAGATTCTACGAAGAAATACAATCGGGATCTTTTCATCTGTCCTGTACCTTATCCTTGTCATAGTTTCAGCAATGACATCTTTGAAAAAACATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

159

Amino Acids

18.02

Weight (kDa)

5.4

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024127)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20470
pyrus_communis	pycom10g22210
rosa_samantha	Rh4CG283000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	364
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	253
AfaI	GTAC	2 cut(s)	89, 426
AflIII	ACRYGT	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	111, 210, 296, 464
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	2 cut(s)	185, 328
AluI	AGCT	2 cut(s)	185, 328
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	2 cut(s)	14, 202
ApoI	RAATTY	1 cut(s)	253
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	155
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	2 cut(s)	53, 386
BmsI	GCATC	1 cut(s)	227
BmuI	ACTGGG	2 cut(s)	53, 386
BoxI	GACNNNNGTC	1 cut(s)	34
BsaBI	GATNNNNATC	2 cut(s)	138, 217
Bse1I	ACTGG	3 cut(s)	17, 59, 381
Bse3DI	GCAATG	1 cut(s)	457
Bse8I	GATNNNNATC	2 cut(s)	138, 217
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	54, 239, 283
BseJI	GATNNNNATC	2 cut(s)	138, 217
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	3 cut(s)	17, 59, 381
BseRI	GAGGAG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	16, 204
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	16, 204
Bsp143I	GATC	3 cut(s)	178, 212, 406
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	2 cut(s)	16, 204
BspCNI	CTCAG	1 cut(s)	316
BspPI	GGATC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	457
BsrI	ACTGG	3 cut(s)	17, 59, 381
BssMI	GATC	3 cut(s)	178, 212, 406
Bst2UI	CCWGG	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	311, 324
BstF5I	GGATG	3 cut(s)	54, 239, 283
BstKTI	GATC	3 cut(s)	181, 215, 409
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	178, 212, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	360
BstPAI	GACNNNNGTC	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	16, 204
BtsCI	GGATG	3 cut(s)	54, 239, 283
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	88, 425
CviAII	CATG	2 cut(s)	72, 357
CviJI	RGCY	4 cut(s)	16, 185, 204, 328
CviKI_1	RGCY	4 cut(s)	16, 185, 204, 328
CviQI	GTAC	2 cut(s)	88, 425
DdeI	CTNAG	2 cut(s)	311, 324
DpnI	GATC	3 cut(s)	180, 214, 408
DpnII	GATC	3 cut(s)	178, 212, 406
EaeI	YGGCCR	1 cut(s)	14
Eco147I	AGGCCT	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	25
FaeI	CATG	2 cut(s)	75, 360
FaiI	YATR	8 cut(s)	73, 79, 99, 275, 358, 374, 441, 472
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	2 cut(s)	71, 356
FokI	GGATG	3 cut(s)	41, 226, 290
HaeIII	GGCC	2 cut(s)	16, 204
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	75, 360
HinfI	GANTC	3 cut(s)	51, 281, 383
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	85, 133, 325
Hpy188III	TCNNGA	2 cut(s)	210, 404
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	311, 324
Hsp92II	CATG	2 cut(s)	75, 360
Kzo9I	GATC	3 cut(s)	178, 212, 406
LpnPI	CCDG	9 cut(s)	12, 17, 30, 39, 72, 179, 247, 362, 435
LweI	GCATC	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	19, 67, 359
MalI	GATC	3 cut(s)	180, 214, 408
MboI	GATC	3 cut(s)	178, 212, 406
MboII	GAAGA	3 cut(s)	99, 185, 403
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	3 cut(s)	111, 253, 336
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	3 cut(s)	126, 151, 194
MseI	TTAA	2 cut(s)	231, 257
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeII	GATC	3 cut(s)	178, 212, 406
NlaIII	CATG	2 cut(s)	75, 360
NmuCI	GTSAC	2 cut(s)	67, 359
NspI	RCATGY	1 cut(s)	360
PceI	AGGCCT	1 cut(s)	204
PciI	ACATGT	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	51, 383
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PscI	ACATGT	1 cut(s)	356
PshAI	GACNNNNGTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	2 cut(s)	89, 426
RsaNI	GTAC	2 cut(s)	88, 425
SaqAI	TTAA	2 cut(s)	231, 257
Sau3AI	GATC	3 cut(s)	178, 212, 406
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	5 cut(s)	36, 187, 266, 330, 430
SfaNI	GCATC	1 cut(s)	227
Sse9I	AATT	3 cut(s)	111, 253, 336
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	1 cut(s)	364
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	25
TaqI	TCGA	1 cut(s)	181
TasI	AATT	3 cut(s)	111, 253, 336
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	51, 383
Tru1I	TTAA	2 cut(s)	231, 257
Tru9I	TTAA	2 cut(s)	231, 257
TseFI	GTSAC	2 cut(s)	67, 359
Tsp45I	GTSAC	2 cut(s)	67, 359
TspDTI	ATGAA	3 cut(s)	116, 228, 403
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	360
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.