FvH4_4g20470

CAS1 domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
23718674 .. 23723677
5004 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20470.t4

Sequence Viewer

Length: 1635 bp
ATGGAGATCTTTAGCCCCATAACTGTCGGCCAGGTCTCGTTGTTGCTTGGAGTTTTACCTATTCTTGGAGCTTGGATTTACTCCGAGTTCTTGGAGCACAAGAAGAATTCACTCTCCACCAAATTTAGGTATTCCGAAGTGAATTTGGTTGAAGTTGAGAAAGATGCGGTTAAGGAAGATGACAGAGCTGTGTTGTTGGAGGGAGGAGGCCTTCAATCTGCTTCTCCGAGAGCTCGAACTCCGTCTACCGCCTCGCCTATTTTCAGGTTCATGTTGATGGATGAAGCTTTCTTGATCGAAAATCGGTTGACGTTGAGGGCAATATCTGAATTTAGTGCTCTTTTAACATACTTCTACTTATGTGATCGTACGGATTTCTTCAACTCGTCAACAAAGAGTTACAATCGGGATCTTTTCATATTTCTGTACTTCCTTCTCATCATAGTCTCAGCCATGACTTCTTTCACGATACATAATGAGAAGTCTCCACTCACTGGGAAGTCCATACTATATTTGAATCGGCATCAAACTGAGGAGTGGAAGGGCTGGATGCAGGTGTTATTTTTGTTGTACCACTATTTTGCTGCAGCAGAATTTTATAATGCAATCCGAGTATTCATTGCTGGATATGTCTGGATGACTGGATTTGGAAACTTTTCTTATTACTATGTTCGCAAGGATTTCAGCCTAGCAAGGTTTGCACAGATGATGTGGCGGCTTAATTTCTTGGTATTGTTTTGCTGTGTGGTCCTCAACAACAGTTACGTGCTGTACTACATCTGTCCTATGCACACTCTATTCACTCTTATGGTTTATGGGGCTCTTGGTATTCTGAACAAGTATAATGAGATTGGGTCGGTGATAGCTTTGAAAATCATTGCTTGCTTCTTGGTTGTTATCGTGGTATGGGAGATACCGGGAGTGTTTGAAGTGCTTTGGAGCCCATTTACTTTCCTGCTTGCTTACACAGATCCTGCAAAACCAAATCTTCCTGTCTTGCATGAGTGGCATTTCCGCTCTGGCCTTGATCGTTACATATGGATTATTGGAATGATTTATGCTTACTATCATCCAACGGTGGAGCGATGGATGGAGAAATTGGAGGAAGCAGAATGGAAGCGTAAAATGTCAATCAAAACAGCTGTTTCTTTAGTAGCCTTGACGGTGGGATATCTGTGGTTTGAGTATATCTACAAGATGGACAAGCTCACTTACAATAAATATCATCCTTATACCTCATGGATTCCTATAACGGTCTACATAACTTTGCGAAATGTCACCCAGCAATTCCGGAGCTACTCATTGACCCTTTTTGCATGGCTTGGAAAGATAACTCTGGAAACATACATCTTGCAGTTCCATGTCTGGTTAAGATCATCACTTCCTGATGCTCAGCCAAAGTTGTTGCTTTCGATGATTCCAGACTACCCAATGTTGAACTTCATGCTTACTTCTACCATCTATGTTGCAATCTCTTACAGACTTTTTGACCTGACAAATACACTGAAAATAGCATTTGTACCCAGCAAAGATAACAAGCGCCTTGTGAACAACATAGTTACAGCCACAGCTGTTTCATGTGCATTATACTTCATCTCCTTTGTCTTCCTAAAAATCCCCCAAATGCTGGTTTGA

Protein Analysis

545

Amino Acids

63.63

Weight (kDa)

8.88

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cas1_AcylT PF07779 102 - 514 1.4e-90 10 TM Acyl Transferase domain found in Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
AarI CACCTGC 1 cut(s) 544
Acc36I ACCTGC 1 cut(s) 544
AccB7I CCANNNNNTGG 2 cut(s) 494, 1627
AccBSI CCGCTC 1 cut(s) 1017
AccI GTMKAC 2 cut(s) 245, 1257
AccIII TCCGGA 1 cut(s) 1290
AciI CCGC 4 cut(s) 167, 249, 715, 1015
AclWI GGATC 2 cut(s) 417, 965
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 5 cut(s) 106, 122, 142, 329, 593
AfaI GTAC 5 cut(s) 370, 428, 572, 773, 1521
AfiI CCNNNNNNNGG 4 cut(s) 65, 126, 494, 1627
AgsI TTSAA 7 cut(s) 152, 215, 382, 517, 871, 929, 1438
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 9 cut(s) 71, 188, 233, 287, 866, 1142, 1207, 1296, 1571
AluI AGCT 9 cut(s) 71, 188, 233, 287, 866, 1142, 1207, 1296, 1571
Alw21I GWGCWC 3 cut(s) 99, 235, 340
Alw26I GTCTC 3 cut(s) 40, 451, 489
AlwI GGATC 2 cut(s) 417, 965
AlwNI CAGNNNCTG 1 cut(s) 974
Aor13HI TCCGGA 1 cut(s) 1290
AoxI GGCC 3 cut(s) 28, 208, 1021
ApeKI GCWGC 2 cut(s) 584, 587
ApoI RAATTY 5 cut(s) 106, 122, 142, 329, 593
Asp700I GAANNNNTTC 1 cut(s) 655
AspLEI GCGC 1 cut(s) 1542
AspS9I GGNCC 1 cut(s) 748
AsuC2I CCSGG 1 cut(s) 918
AsuHPI GGTGA 2 cut(s) 871, 1270
AvaII GGWCC 1 cut(s) 748
BanII GRGCYC 3 cut(s) 235, 823, 944
BbsI GAAGAC 1 cut(s) 1597
Bbv12I GWGCWC 3 cut(s) 99, 235, 340
BbvI GCAGC 2 cut(s) 571, 599
BccI CCATC 5 cut(s) 271, 1080, 1084, 1192, 1466
BciT130I CCWGG 1 cut(s) 32
BcnI CCSGG 1 cut(s) 918
BcoDI GTCTC 3 cut(s) 40, 451, 489
BfaI CTAG 1 cut(s) 689
BfmI CTRYAG 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 1543
BfuAI ACCTGC 1 cut(s) 544
BglII AGATCT 1 cut(s) 6
BisI GCNGC 3 cut(s) 585, 588, 716
BlpI GCTNAGC 1 cut(s) 1392
BlsI GCNGC 3 cut(s) 586, 589, 717
Bme1390I CCNGG 2 cut(s) 32, 918
Bme18I GGWCC 1 cut(s) 748
BmgT120I GGNCC 1 cut(s) 748
BmiI GGNNCC 1 cut(s) 941
BmrFI CCNGG 2 cut(s) 32, 918
BmrI ACTGGG 1 cut(s) 504
BmsI GCATC 4 cut(s) 154, 532, 540, 1378
BmuI ACTGGG 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 1597
Bpu1102I GCTNAGC 1 cut(s) 1392
BpuMI CCSGG 1 cut(s) 918
BsaAI YACGTR 1 cut(s) 766
BsaI GGTCTC 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 1290
BsaXI ACNNNNNCTCC 2 cut(s) 1580, 1610
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 126, 494, 1627
Bse1I ACTGG 2 cut(s) 499, 646
Bse3DI GCAATG 2 cut(s) 618, 876
BseAI TCCGGA 1 cut(s) 1290
BseBI CCWGG 1 cut(s) 32
BseGI GGATG 6 cut(s) 286, 555, 642, 1069, 1095, 1225
BseLI CCNNNNNNNGG 4 cut(s) 65, 126, 494, 1627
BseMI GCAATG 2 cut(s) 618, 876
BseMII CTCAG 3 cut(s) 462, 522, 1406
BseNI ACTGG 2 cut(s) 499, 646
BseRI GAGGAG 2 cut(s) 219, 548
BseXI GCAGC 2 cut(s) 571, 599
BseYI CCCAGC 2 cut(s) 1281, 1523
BshFI GGCC 3 cut(s) 30, 210, 1023
BsiHKAI GWGCWC 3 cut(s) 99, 235, 340
BsiSI CCGG 2 cut(s) 917, 1291
BsiWI CGTACG 1 cut(s) 368
BslI CCNNNNNNNGG 4 cut(s) 65, 126, 494, 1627
BsmAI GTCTC 3 cut(s) 40, 451, 489
BsnI GGCC 3 cut(s) 30, 210, 1023
Bso31I GGTCTC 1 cut(s) 40
Bsp1286I GDGCHC 5 cut(s) 99, 235, 340, 823, 944
Bsp13I TCCGGA 1 cut(s) 1290
Bsp143I GATC 7 cut(s) 6, 294, 364, 409, 970, 1027, 1373
Bsp1720I GCTNAGC 1 cut(s) 1392
BspACI CCGC 4 cut(s) 167, 249, 715, 1015
BspANI GGCC 3 cut(s) 30, 210, 1023
BspCNI CTCAG 3 cut(s) 461, 523, 1405
BspEI TCCGGA 1 cut(s) 1290
BspLI GGNNCC 1 cut(s) 941
BspMAI CTGCAG 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 2 cut(s) 417, 965
BspTNI GGTCTC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 1017
BsrDI GCAATG 2 cut(s) 618, 876
BsrI ACTGG 2 cut(s) 499, 646
BssMI GATC 7 cut(s) 6, 294, 364, 409, 970, 1027, 1373
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 5 cut(s) 25, 761, 1078, 1165, 1255
BstAPI GCANNNNNTGC 1 cut(s) 698
BstBAI YACGTR 1 cut(s) 766
BstC8I GCNNGC 2 cut(s) 883, 960
BstDEI CTNAG 3 cut(s) 448, 531, 1392
BstF5I GGATG 6 cut(s) 286, 555, 642, 1069, 1095, 1225
BstH2I RGCGCY 1 cut(s) 1543
BstHHI GCGC 1 cut(s) 1542
BstKTI GATC 7 cut(s) 9, 297, 367, 412, 973, 1030, 1376
BstMAI GTCTC 3 cut(s) 40, 451, 489
BstMBI GATC 7 cut(s) 6, 294, 364, 409, 970, 1027, 1373
BstMWI GCNNNNNNNGC 2 cut(s) 698, 1006
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 2 cut(s) 30, 916
BstSFI CTRYAG 1 cut(s) 585
BstV1I GCAGC 2 cut(s) 571, 599
BstV2I GAAGAC 1 cut(s) 1597
BstX2I RGATCY 3 cut(s) 6, 409, 970
BstYI RGATCY 3 cut(s) 6, 409, 970
BsuRI GGCC 3 cut(s) 30, 210, 1023
BtgZI GCGATG 1 cut(s) 1099
BtsCI GGATG 6 cut(s) 286, 555, 642, 1069, 1095, 1225
BtsIMutI CAGTG 2 cut(s) 492, 1502
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 883, 960
CaiI CAGNNNCTG 1 cut(s) 974
CfoI GCGC 1 cut(s) 1542
Cfr13I GGNCC 1 cut(s) 748
Csp6I GTAC 5 cut(s) 369, 427, 571, 772, 1520
CviAII CATG 8 cut(s) 271, 454, 1001, 1239, 1317, 1361, 1444, 1578
CviQI GTAC 5 cut(s) 369, 427, 571, 772, 1520
DdeI CTNAG 3 cut(s) 448, 531, 1392
DpnI GATC 7 cut(s) 8, 296, 366, 411, 972, 1029, 1375
DpnII GATC 7 cut(s) 6, 294, 364, 409, 970, 1027, 1373
EaeI YGGCCR 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 233
Eco147I AGGCCT 1 cut(s) 210
Eco24I GRGCYC 3 cut(s) 235, 823, 944
Eco31I GGTCTC 1 cut(s) 40
Eco32I GATATC 1 cut(s) 1172
Eco47I GGWCC 1 cut(s) 748
Eco53kI GAGCTC 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 1172
EcoT38I GRGCYC 3 cut(s) 235, 823, 944
FaeI CATG 8 cut(s) 274, 457, 1004, 1242, 1320, 1364, 1447, 1581
FatI CATG 8 cut(s) 270, 453, 1000, 1238, 1316, 1360, 1443, 1577
FauNDI CATATG 1 cut(s) 1037
FblI GTMKAC 2 cut(s) 245, 1257
Fnu4HI GCNGC 3 cut(s) 585, 588, 716
FokI GGATG 6 cut(s) 293, 562, 649, 1056, 1102, 1212
FriOI GRGCYC 3 cut(s) 235, 823, 944
Fsp4HI GCNGC 3 cut(s) 585, 588, 716
FspBI CTAG 1 cut(s) 689
GlaI GCGC 1 cut(s) 1541
GluI GCNGC 3 cut(s) 585, 588, 716
GsaI CCCAGC 2 cut(s) 1285, 1527
HaeII RGCGCY 1 cut(s) 1543
HaeIII GGCC 3 cut(s) 30, 210, 1023
HapII CCGG 2 cut(s) 917, 1291
HhaI GCGC 1 cut(s) 1542
Hin1II CATG 8 cut(s) 274, 457, 1004, 1242, 1320, 1364, 1447, 1581
Hin6I GCGC 1 cut(s) 1540
HinP1I GCGC 1 cut(s) 1540
HincII GTYRAC 2 cut(s) 309, 390
HindII GTYRAC 2 cut(s) 309, 390
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 3 cut(s) 517, 1243, 1417
HpaII CCGG 2 cut(s) 917, 1291
HphI GGTGA 2 cut(s) 871, 1270
Hpy166II GTNNAC 5 cut(s) 246, 309, 390, 1258, 1549
Hpy188I TCNGA 6 cut(s) 85, 136, 228, 328, 611, 834
Hpy188III TCNNGA 8 cut(s) 292, 407, 466, 634, 1291, 1337, 1385, 1421
Hpy8I GTNNAC 5 cut(s) 246, 309, 390, 1258, 1549
HpyAV CCTTC 3 cut(s) 221, 443, 535
HpyCH4III ACNGT 5 cut(s) 25, 761, 1078, 1165, 1255
HpyCH4IV ACGT 2 cut(s) 311, 765
HpyF10VI GCNNNNNNNGC 2 cut(s) 698, 1006
HpyF3I CTNAG 3 cut(s) 448, 531, 1392
HpySE526I ACGT 2 cut(s) 311, 765
Hsp92II CATG 8 cut(s) 274, 457, 1004, 1242, 1320, 1364, 1447, 1581
HspAI GCGC 1 cut(s) 1540
Kpn2I TCCGGA 1 cut(s) 1290
Kzo9I GATC 7 cut(s) 6, 294, 364, 409, 970, 1027, 1373
LmnI GCTCC 5 cut(s) 68, 94, 939, 1081, 1293
Lsp1109I GCAGC 2 cut(s) 571, 599
LweI GCATC 4 cut(s) 154, 532, 540, 1378
MaeI CTAG 1 cut(s) 689
MaeII ACGT 2 cut(s) 311, 765
MaeIII GTNAC 5 cut(s) 398, 761, 1031, 1276, 1558
MalI GATC 7 cut(s) 8, 296, 366, 411, 972, 1029, 1375
MbiI CCGCTC 1 cut(s) 1017
MboI GATC 7 cut(s) 6, 294, 364, 409, 970, 1027, 1373
MboII GAAGA 5 cut(s) 115, 188, 370, 980, 1597
MflI RGATCY 3 cut(s) 6, 409, 970
MhlI GDGCHC 5 cut(s) 99, 235, 340, 823, 944
MluCI AATT 8 cut(s) 106, 122, 142, 329, 593, 721, 1097, 1286
MmeI TCCRAC 2 cut(s) 177, 1097
MnlI CCTC 9 cut(s) 193, 197, 200, 262, 309, 526, 761, 1096, 1246
MroI TCCGGA 1 cut(s) 1290
MroXI GAANNNNTTC 1 cut(s) 655
MseI TTAA 4 cut(s) 171, 344, 720, 1370
MslI CAYNNNNRTG 2 cut(s) 275, 806
MspA1I CMGCKG 2 cut(s) 1142, 1571
MspI CCGG 2 cut(s) 917, 1291
MspR9I CCNGG 2 cut(s) 32, 918
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 698, 1006
NciI CCSGG 1 cut(s) 918
NdeI CATATG 1 cut(s) 1037
NdeII GATC 7 cut(s) 6, 294, 364, 409, 970, 1027, 1373
NlaIII CATG 8 cut(s) 274, 457, 1004, 1242, 1320, 1364, 1447, 1581
NlaIV GGNNCC 1 cut(s) 941
NmuCI GTSAC 1 cut(s) 1276
PaqCI CACCTGC 1 cut(s) 544
PceI AGGCCT 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 655
PfeI GAWTC 3 cut(s) 517, 1243, 1417
Pfl23II CGTACG 1 cut(s) 368
PflMI CCANNNNNTGG 2 cut(s) 494, 1627
PkrI GCNGC 3 cut(s) 586, 589, 717
Ppu21I YACGTR 1 cut(s) 766
PsiI TTATAA 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 30
PspFI CCCAGC 2 cut(s) 1281, 1523
PspGI CCWGG 1 cut(s) 30
PspLI CGTACG 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 941
PspPI GGNCC 1 cut(s) 748
PsrI GAACNNNNNNTAC 2 cut(s) 229, 261
PstI CTGCAG 1 cut(s) 589
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 3 cut(s) 6, 409, 970
PvuII CAGCTG 2 cut(s) 1142, 1571
RsaI GTAC 5 cut(s) 370, 428, 572, 773, 1521
RsaNI GTAC 5 cut(s) 369, 427, 571, 772, 1520
RseI CAYNNNNRTG 2 cut(s) 275, 806
SacI GAGCTC 1 cut(s) 235
SaqAI TTAA 4 cut(s) 171, 344, 720, 1370
SatI GCNGC 3 cut(s) 585, 588, 716
Sau3AI GATC 7 cut(s) 6, 294, 364, 409, 970, 1027, 1373
Sau96I GGNCC 1 cut(s) 748
ScrFI CCNGG 2 cut(s) 32, 918
SduI GDGCHC 5 cut(s) 99, 235, 340, 823, 944
SfaNI GCATC 4 cut(s) 154, 532, 540, 1378
SfcI CTRYAG 1 cut(s) 585
SinI GGWCC 1 cut(s) 748
SmiMI CAYNNNNRTG 2 cut(s) 275, 806
Sse9I AATT 8 cut(s) 106, 122, 142, 329, 593, 721, 1097, 1286
SseBI AGGCCT 1 cut(s) 210
SsiI CCGC 4 cut(s) 167, 249, 715, 1015
SspMI CTAG 1 cut(s) 689
SstI GAGCTC 1 cut(s) 235
StuI AGGCCT 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 30, 916
TaaI ACNGT 5 cut(s) 25, 761, 1078, 1165, 1255
TaiI ACGT 2 cut(s) 314, 768
TaqI TCGA 3 cut(s) 235, 297, 1412
TasI AATT 8 cut(s) 106, 122, 142, 329, 593, 721, 1097, 1286
TatI WGTACW 2 cut(s) 426, 771
TauI GCSGC 1 cut(s) 718
TfiI GAWTC 3 cut(s) 517, 1243, 1417
Tru1I TTAA 4 cut(s) 171, 344, 720, 1370
Tru9I TTAA 4 cut(s) 171, 344, 720, 1370
TscAI CASTG 2 cut(s) 499, 1509
TseFI GTSAC 1 cut(s) 1276
TseI GCWGC 2 cut(s) 584, 587
Tsp45I GTSAC 1 cut(s) 1276
TspDTI ATGAA 7 cut(s) 259, 297, 406, 607, 1432, 1566, 1582
TspGWI ACGGA 2 cut(s) 231, 386
TspRI CASTG 2 cut(s) 499, 1509
Van91I CCANNNNNTGG 2 cut(s) 494, 1627
VpaK11BI GGWCC 1 cut(s) 748
XapI RAATTY 5 cut(s) 106, 122, 142, 329, 593
XmiI GTMKAC 2 cut(s) 245, 1257
XmnI GAANNNNTTC 1 cut(s) 655
XspI CTAG 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.