MD13G1149400.v1.1

CAS1 domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
11731990 .. 11736481
4492 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1149400.v1.1.491

Sequence Viewer

Length: 1632 bp
ATGATGATCTTTAGCCCTGTAACTGCCGCCCAGGTTTCATTCTTGCTCGGAGTTATTCCGATAATCGCAGCTTGGATTTATGCCGAGTTCTTGGAGTACAAGAAGAATTCACTTTCTTCCAAATTGTACTCCGAGGTGAATTTGGTTGAATTGGAAAAAGAGGTGGTTAAAGAGGATGATAGAGCTGTTTTGTTGGAGGGAGGAGGTCTACAATCCGCCTCCCCGAAAGCTCGAATTCCATCTGGCTATTCGCCTATTTTCAGGTTCATGTTGATGGATTCGTCTTTCTTGCTTGATAATCGGCTGACGCTTAGGGCAATATCTGAATTTAGTATCCTGTTAGCGTACTTATACTTATGCGATCGTACGGATTTCTTCAATGCATCAACAAAGAGTTACAATCGGGATCTTTTCATATTTCTATACTTCCTTCTCATCATAGTTTCAGCAATGACTTCTTTCACGGTACATAATGAGAAGTCTCCGTTAACCGGGAAAGCCATACTTTATTTGAATAGGCATCAAACTGAGGAGTGGAAAGGCTGGATGCAGGTGTTATTTTTGTTGTACCACTATTTTGCTGCAACAGAAATTTATAATGCAATTCGAGTATTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTTTCTTATTATTATGTCCGCAAAGATTTCAGCCTAGCAAGGTTTGCACAGATGATGTGGCGGCTTAATTTCTTGGTACTTTTTTGCTGTGTTATCCTTAACAACAGTTACGTGCTGTACTACATCTGTCCAATGCACACTCTATTCACTCTTATGGTTTATGGGGCACTTGGTATTATGAACAAATACAATGAAACTGGGTCAGTGATAGCTGTGAAAATCGCCGGTTGCTTCTTGGTTGTTATCTTGGTGTGGGAAATACCTGGAGTGTTTGAATTGCTTTGGTGGCCATTTACATTCCTCCTTGGCTACACAGATCCTGCGAAACCTGGTTTACCCCTCTTGCATGAATGGCATTTCCGCTCAGGCCTGGATCGATATATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTGTTGAAAGATGGATGGAGAAACTGGAGGAATCAGAATGGAAGCGTAAAACATCAATCAAATCAGCAGTTTCCTTGATAGCCTTAATGGTGGGATATCTATGGTTTGAGTATATATACAAGATGGACAAGCTTACTTACAATAAATATCATCCCTATACCTCATGGATTCCAATAACGGTCTACATATGTTTGCGAAATGTCACACAACAATTCCGCAGCTACTCTTTAACCCTTTTTGCGTGGCTTGGAAAGATCACACTGGAGACTTACATCTTGCAATTCCACGTCTGGTTAAGGTCAAGTACCCCTGATGCTCAGCCGAAGTTGTTGCTTTCTATGATCCCGGATTACCCAATGTTGAACTTCATGCTCACTTCTGCCATATACGTTGCTATCTCTTGCAGGCTCTTCGACCTGACAAATACTTTGAAAATAGCATTTGTACCCAGTAAAGATAACAAGCGCCTCGTCTCCAACATAGTTACAGCCACAGCAGTTTCATGTGGATTATACTTCATCTCTTTTGTCTTCCTAAAAGTCCCCCAAATGATGGCTTGA

Protein Analysis

544

Amino Acids

63.32

Weight (kDa)

8.88

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cas1_AcylT PF07779 103 - 513 1.8e-91 10 TM Acyl Transferase domain found in Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AarI CACCTGC 1 cut(s) 541
Acc36I ACCTGC 1 cut(s) 541
AccB7I CCANNNNNTGG 1 cut(s) 1624
AccBSI CCGCTC 1 cut(s) 1014
AccI GTMKAC 2 cut(s) 208, 1254
AciI CCGC 6 cut(s) 27, 216, 670, 712, 1012, 1288
AclWI GGATC 4 cut(s) 414, 962, 1032, 1408
AcoI YGGCCR 1 cut(s) 938
AcsI RAATTY 5 cut(s) 106, 139, 234, 326, 591
AfiI CCNNNNNNNGG 2 cut(s) 491, 1624
AgsI TTSAA 7 cut(s) 149, 379, 514, 926, 1079, 1435, 1504
AjiI CACGTC 1 cut(s) 1360
AjnI CCWGG 4 cut(s) 30, 913, 979, 1020
AluBI AGCT 6 cut(s) 71, 185, 230, 863, 1204, 1293
AluI AGCT 6 cut(s) 71, 185, 230, 863, 1204, 1293
Alw26I GTCTC 3 cut(s) 486, 1331, 1549
AlwI GGATC 4 cut(s) 414, 962, 1032, 1408
AlwNI CAGNNNCTG 1 cut(s) 971
AoxI GGCC 2 cut(s) 938, 1018
ApeKI GCWGC 4 cut(s) 68, 581, 620, 1290
ApoI RAATTY 5 cut(s) 106, 139, 234, 326, 591
ArsI GACNNNNNNTTYG 2 cut(s) 1483, 1515
Asp700I GAANNNNTTC 1 cut(s) 652
AspLEI GCGC 1 cut(s) 1539
AsuC2I CCSGG 2 cut(s) 493, 1418
AsuHPI GGTGA 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 820
BalI TGGCCA 1 cut(s) 940
BbsI GAAGAC 1 cut(s) 1594
BbvI GCAGC 4 cut(s) 80, 568, 607, 1302
BccI CCATC 6 cut(s) 247, 268, 1077, 1081, 1189, 1618
BcgI CGANNNNNNTGC 4 cut(s) 1384, 1418, 1465, 1499
BciT130I CCWGG 4 cut(s) 32, 915, 981, 1022
BciVI GTATCC 1 cut(s) 344
BcnI CCSGG 2 cut(s) 493, 1418
BcoDI GTCTC 3 cut(s) 486, 1331, 1549
BfaI CTAG 1 cut(s) 686
BfoI RGCGCY 1 cut(s) 1540
BfuAI ACCTGC 1 cut(s) 541
BfuI GTATCC 1 cut(s) 344
BisI GCNGC 6 cut(s) 27, 69, 582, 621, 713, 1291
BlpI GCTNAGC 1 cut(s) 1389
BlsI GCNGC 6 cut(s) 28, 70, 583, 622, 714, 1292
Bme1390I CCNGG 6 cut(s) 32, 493, 915, 981, 1022, 1418
BmgBI CACGTC 1 cut(s) 1360
BmrFI CCNGG 6 cut(s) 32, 493, 915, 981, 1022, 1418
BmrI ACTGGG 2 cut(s) 858, 1515
BmsI GCATC 4 cut(s) 392, 529, 537, 1375
BmuI ACTGGG 2 cut(s) 858, 1515
BpiI GAAGAC 1 cut(s) 1594
BpmI CTGGAG 3 cut(s) 936, 1118, 1355
Bpu10I CCTNAGC 2 cut(s) 311, 1015
Bpu1102I GCTNAGC 1 cut(s) 1389
BpuMI CCSGG 2 cut(s) 493, 1418
Bsa29I ATCGAT 1 cut(s) 1027
BsaAI YACGTR 1 cut(s) 763
BsaJI CCNNGG 3 cut(s) 30, 132, 955
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 1624
Bse118I RCCGGY 1 cut(s) 875
Bse1I ACTGG 5 cut(s) 643, 853, 1101, 1338, 1521
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 4 cut(s) 32, 915, 981, 1022
BseCI ATCGAT 1 cut(s) 1027
BseDI CCNNGG 3 cut(s) 30, 132, 955
BseGI GGATG 6 cut(s) 181, 552, 639, 1066, 1092, 1222
BseLI CCNNNNNNNGG 2 cut(s) 491, 1624
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 3 cut(s) 519, 1029, 1403
BseNI ACTGG 5 cut(s) 643, 853, 1101, 1338, 1521
BseRI GAGGAG 2 cut(s) 216, 545
BseSI GKGCMC 1 cut(s) 820
BseXI GCAGC 4 cut(s) 80, 568, 607, 1302
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 2 cut(s) 940, 1020
BshVI ATCGAT 1 cut(s) 1027
BsiEI CGRYCG 1 cut(s) 364
BsiSI CCGG 3 cut(s) 492, 876, 1418
BsiWI CGTACG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 1598
BslI CCNNNNNNNGG 2 cut(s) 491, 1624
BsmAI GTCTC 3 cut(s) 486, 1331, 1549
BsmBI CGTCTC 1 cut(s) 1549
BsmFI GGGAC 1 cut(s) 1598
BsnI GGCC 2 cut(s) 940, 1020
Bsp1286I GDGCHC 1 cut(s) 820
Bsp143I GATC 7 cut(s) 6, 361, 406, 967, 1024, 1326, 1413
Bsp1720I GCTNAGC 1 cut(s) 1389
BspACI CCGC 6 cut(s) 27, 216, 670, 712, 1012, 1288
BspANI GGCC 2 cut(s) 940, 1020
BspCNI CTCAG 3 cut(s) 520, 1028, 1402
BspDI ATCGAT 1 cut(s) 1027
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 4 cut(s) 414, 962, 1032, 1408
BspQI GCTCTTC 1 cut(s) 1487
BsrBI CCGCTC 1 cut(s) 1014
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 875
BsrI ACTGG 5 cut(s) 643, 853, 1101, 1338, 1521
BssAI RCCGGY 1 cut(s) 875
BssECI CCNNGG 3 cut(s) 30, 132, 955
BssMI GATC 7 cut(s) 6, 361, 406, 967, 1024, 1326, 1413
BssT1I CCWWGG 1 cut(s) 955
Bst2UI CCWGG 4 cut(s) 32, 915, 981, 1022
Bst4CI ACNGT 4 cut(s) 466, 758, 1075, 1252
Bst6I CTCTTC 5 cut(s) 860, 1487, 1710, 1844, 2634
BstAPI GCANNNNNTGC 1 cut(s) 695
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 1 cut(s) 1478
BstDEI CTNAG 4 cut(s) 311, 528, 1015, 1389
BstF5I GGATG 6 cut(s) 181, 552, 639, 1066, 1092, 1222
BstH2I RGCGCY 1 cut(s) 1540
BstHHI GCGC 1 cut(s) 1539
BstKTI GATC 7 cut(s) 9, 364, 409, 970, 1027, 1329, 1416
BstMAI GTCTC 3 cut(s) 486, 1331, 1549
BstMBI GATC 7 cut(s) 6, 361, 406, 967, 1024, 1326, 1413
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 3 cut(s) 695, 937, 1003
BstNI CCWGG 4 cut(s) 32, 915, 981, 1022
BstSCI CCNGG 6 cut(s) 30, 491, 913, 979, 1020, 1416
BstSLI GKGCMC 1 cut(s) 820
BstV1I GCAGC 4 cut(s) 80, 568, 607, 1302
BstV2I GAAGAC 1 cut(s) 1594
BstX2I RGATCY 2 cut(s) 406, 967
BstYI RGATCY 2 cut(s) 406, 967
Bsu15I ATCGAT 1 cut(s) 1027
BsuI GTATCC 1 cut(s) 344
BsuRI GGCC 2 cut(s) 940, 1020
BsuTUI ATCGAT 1 cut(s) 1027
BtrI CACGTC 1 cut(s) 1360
BtsCI GGATG 6 cut(s) 181, 552, 639, 1066, 1092, 1222
BtsIMutI CAGTG 2 cut(s) 861, 1331
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 1478
CaiI CAGNNNCTG 1 cut(s) 971
CfoI GCGC 1 cut(s) 1539
Cfr10I RCCGGY 1 cut(s) 875
ClaI ATCGAT 1 cut(s) 1027
CseI GACGC 1 cut(s) 316
CsiI ACCWGGT 1 cut(s) 979
CviAII CATG 5 cut(s) 268, 998, 1236, 1441, 1575
DdeI CTNAG 4 cut(s) 311, 528, 1015, 1389
DpnI GATC 7 cut(s) 8, 363, 408, 969, 1026, 1328, 1415
DpnII GATC 7 cut(s) 6, 361, 406, 967, 1024, 1326, 1413
EaeI YGGCCR 1 cut(s) 938
Eam1104I CTCTTC 1 cut(s) 1487
EarI CTCTTC 1 cut(s) 1487
EciI GGCGGA 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 955
Eco147I AGGCCT 1 cut(s) 1020
Eco32I GATATC 1 cut(s) 1169
EcoRI GAATTC 2 cut(s) 106, 234
EcoRII CCWGG 4 cut(s) 30, 913, 979, 1020
EcoRV GATATC 1 cut(s) 1169
EcoT14I CCWWGG 1 cut(s) 955
EcoT22I ATGCAT 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 955
Esp3I CGTCTC 1 cut(s) 1549
FaeI CATG 5 cut(s) 271, 1001, 1239, 1444, 1578
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 1 cut(s) 1598
FatI CATG 5 cut(s) 267, 997, 1235, 1440, 1574
FauNDI CATATG 2 cut(s) 625, 1259
FblI GTMKAC 2 cut(s) 208, 1254
Fnu4HI GCNGC 6 cut(s) 27, 69, 582, 621, 713, 1291
FokI GGATG 6 cut(s) 188, 559, 646, 1053, 1099, 1209
Fsp4HI GCNGC 6 cut(s) 27, 69, 582, 621, 713, 1291
FspBI CTAG 1 cut(s) 686
GlaI GCGC 1 cut(s) 1538
GluI GCNGC 6 cut(s) 27, 69, 582, 621, 713, 1291
GsuI CTGGAG 3 cut(s) 936, 1118, 1355
HaeII RGCGCY 1 cut(s) 1540
HaeIII GGCC 2 cut(s) 940, 1020
HapII CCGG 3 cut(s) 492, 876, 1418
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 1539
Hin1II CATG 5 cut(s) 271, 1001, 1239, 1444, 1578
Hin6I GCGC 1 cut(s) 1537
HinP1I GCGC 1 cut(s) 1537
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HindIII AAGCTT 1 cut(s) 1202
HinfI GANTC 3 cut(s) 278, 1103, 1240
HpaI GTTAAC 1 cut(s) 489
HpaII CCGG 3 cut(s) 492, 876, 1418
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 4 cut(s) 209, 489, 986, 1255
Hpy188I TCNGA 5 cut(s) 50, 60, 133, 325, 1108
Hpy188III TCNNGA 2 cut(s) 404, 631
Hpy8I GTNNAC 4 cut(s) 209, 489, 986, 1255
HpyAV CCTTC 1 cut(s) 440
HpyCH4III ACNGT 4 cut(s) 466, 758, 1075, 1252
HpyCH4IV ACGT 3 cut(s) 762, 1359, 1461
HpyF10VI GCNNNNNNNGC 3 cut(s) 695, 937, 1003
HpyF3I CTNAG 4 cut(s) 311, 528, 1015, 1389
HpySE526I ACGT 3 cut(s) 762, 1359, 1461
Hsp92II CATG 5 cut(s) 271, 1001, 1239, 1444, 1578
HspAI GCGC 1 cut(s) 1537
KspAI GTTAAC 1 cut(s) 489
Kzo9I GATC 7 cut(s) 6, 361, 406, 967, 1024, 1326, 1413
LguI GCTCTTC 1 cut(s) 1487
LweI GCATC 4 cut(s) 392, 529, 537, 1375
MabI ACCWGGT 1 cut(s) 979
MaeI CTAG 1 cut(s) 686
MaeII ACGT 3 cut(s) 762, 1359, 1461
MaeIII GTNAC 5 cut(s) 19, 395, 758, 1273, 1555
MalI GATC 7 cut(s) 8, 363, 408, 969, 1026, 1328, 1415
MbiI CCGCTC 1 cut(s) 1014
MboI GATC 7 cut(s) 6, 361, 406, 967, 1024, 1326, 1413
MboII GAAGA 5 cut(s) 108, 115, 367, 1474, 1594
MflI RGATCY 2 cut(s) 406, 967
MhlI GDGCHC 1 cut(s) 820
MlsI TGGCCA 1 cut(s) 940
MluNI TGGCCA 1 cut(s) 940
MmeI TCCRAC 3 cut(s) 174, 1094, 1572
Mox20I TGGCCA 1 cut(s) 940
Mph1103I ATGCAT 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 652
MscI TGGCCA 1 cut(s) 940
MseI TTAA 7 cut(s) 168, 488, 717, 750, 1157, 1301, 1367
MslI CAYNNNNRTG 2 cut(s) 272, 803
Msp20I TGGCCA 1 cut(s) 940
MspI CCGG 3 cut(s) 492, 876, 1418
MspR9I CCNGG 6 cut(s) 32, 493, 915, 981, 1022, 1418
MvaI CCWGG 4 cut(s) 32, 915, 981, 1022
MwoI GCNNNNNNNGC 3 cut(s) 695, 937, 1003
NciI CCSGG 2 cut(s) 493, 1418
NdeI CATATG 2 cut(s) 625, 1259
NdeII GATC 7 cut(s) 6, 361, 406, 967, 1024, 1326, 1413
NlaIII CATG 5 cut(s) 271, 1001, 1239, 1444, 1578
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 1273
NsiI ATGCAT 1 cut(s) 385
PaqCI CACCTGC 1 cut(s) 541
PceI AGGCCT 1 cut(s) 1020
PciSI GCTCTTC 1 cut(s) 1487
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 3 cut(s) 278, 1103, 1240
Pfl23II CGTACG 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 1624
PfoI TCCNGGA 1 cut(s) 1416
PkrI GCNGC 6 cut(s) 28, 70, 583, 622, 714, 1292
Ple19I CGATCG 1 cut(s) 364
Ppu21I YACGTR 1 cut(s) 763
PsiI TTATAA 1 cut(s) 597
Psp6I CCWGG 4 cut(s) 30, 913, 979, 1020
PspGI CCWGG 4 cut(s) 30, 913, 979, 1020
PspLI CGTACG 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 971
PsuI RGATCY 2 cut(s) 406, 967
PvuI CGATCG 1 cut(s) 364
RseI CAYNNNNRTG 2 cut(s) 272, 803
SapI GCTCTTC 1 cut(s) 1487
SaqAI TTAA 7 cut(s) 168, 488, 717, 750, 1157, 1301, 1367
SatI GCNGC 6 cut(s) 27, 69, 582, 621, 713, 1291
Sau3AI GATC 7 cut(s) 6, 361, 406, 967, 1024, 1326, 1413
ScrFI CCNGG 6 cut(s) 32, 493, 915, 981, 1022, 1418
SduI GDGCHC 1 cut(s) 820
SexAI ACCWGGT 1 cut(s) 979
SfaNI GCATC 4 cut(s) 392, 529, 537, 1375
SmiMI CAYNNNNRTG 2 cut(s) 272, 803
SseBI AGGCCT 1 cut(s) 1020
SsiI CCGC 6 cut(s) 27, 216, 670, 712, 1012, 1288
SspMI CTAG 1 cut(s) 686
StuI AGGCCT 1 cut(s) 1020
StyD4I CCNGG 6 cut(s) 30, 491, 913, 979, 1020, 1416
StyI CCWWGG 1 cut(s) 955
TaaI ACNGT 4 cut(s) 466, 758, 1075, 1252
TaiI ACGT 3 cut(s) 765, 1362, 1464
TaqI TCGA 4 cut(s) 232, 607, 1027, 1485
TatI WGTACW 3 cut(s) 96, 126, 768
TauI GCSGC 2 cut(s) 29, 715
TfiI GAWTC 3 cut(s) 278, 1103, 1240
Tru1I TTAA 7 cut(s) 168, 488, 717, 750, 1157, 1301, 1367
Tru9I TTAA 7 cut(s) 168, 488, 717, 750, 1157, 1301, 1367
TscAI CASTG 2 cut(s) 861, 1338
TseFI GTSAC 1 cut(s) 1273
TseI GCWGC 4 cut(s) 68, 581, 620, 1290
Tsp45I GTSAC 1 cut(s) 1273
TspDTI ATGAA 9 cut(s) 27, 256, 403, 845, 858, 1014, 1429, 1563, 1579
TspGWI ACGGA 2 cut(s) 383, 474
TspRI CASTG 2 cut(s) 861, 1338
Van91I CCANNNNNTGG 1 cut(s) 1624
XapI RAATTY 5 cut(s) 106, 139, 234, 326, 591
XmiI GTMKAC 2 cut(s) 208, 1254
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 1 cut(s) 686
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.