Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006007

Physical Location & Seq

Genomic Coordinates Reverse (-)

36076904 .. 36082075

Gene Structure 5172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0207500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCGTCTCGGCTGCAGAAGATCGAAACGGACGAATCGGTACTACTGCGAGTGACGCATTCCAACCTCAAGACCTTCTCTGCGGAAATCCGGTTCTCCCTGCAGAGCACCGTGGAGGCCGTGAAAGACAAGCTATGGCGCAAATGCGGCACTTCTGTGAATTCCATGTCTCTTCATCTCTACGACGACGCCAACACCAAAGTCGCCGATCTCGCCGACAATTCCAGACCCCTCGGCTTCTATTCCCCTCTCGACGGGTTCCGGCTACATATTATAGACCTGGACCCGTCGTCGGTGACCTCCGGCGGGTGGCTGGAGGACACGTCATTGGTGGAGAAGTACACGATTTCCAAGGAAGCTTATGAGAAACGCGATGGCACTTATAAAAAGTTTAAGGACAAATTGGCATCTCAGAATACATCAGCTGTTGATAATAAAATACCAGACAACTACATGGAAGACCTCTGTGCGAATATTAAGGTAGGAGATAGATGTCAAGTTGAACCAGGGGACAAAAGAGGTGTTGTTAAATTTGTCGGCCGAGCAGAATCTTTGGCTCCTGGTTTCTGGGTTGGAGTTCAATATGATGAACCATTGGGAAAGCACGATGGCATGGTGAAAGGAACTCGTTACTTCAATTGCCCCCCTCTTCACGGCGCAGTGGTTCGACCCGACAAAGTCAAGGTCGGTGACTACCCAGAACGAGATCCCTTCGAGGAGGATGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009834 GO:0009987 GO:0010033 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0042221 GO:0042546 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0098542 GO:1901576 GO:1901700 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

243

Amino Acids

27.27

Weight (kDa)

5.63

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_2	PF14560	14 - 98	1.1e-29	Ubiquitin-like domain
CAP_GLY	PF01302	161 - 227	4.7e-24	CAP-Gly domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06550 AT3G06550 AT3G06550
fragaria_vesca	FvH4_4g20470 FvH4_4g20470 FvH4_4g20470 FvH4_4g20470
malus_domestica	MD13G1149400.v1.1 MD16G1149700.v1.1
prunus_persica	Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1
pyrus_communis	pycom13g12860 pycom16g12820
rosa_chinensis	RchiOBHm_Chr4g0425951
rosa_laevigata	RLG00000007329
rosa_multiflora	Rmu_sc0002091.1_g000007 Rmu_ssc0000281.1_g000024
rosa_roxburghii	Rroxscaffold_5G00367960
rosa_rugosa	Rorug04G0207500 Rorug04G0207500 Rorug04G0207600
rosa_samantha	Rh4AG264500 Rh4BG270400 Rh4DG267000
rosa_wichuraiana	Rw4G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AccII	CGCG	1 cut(s)	372
AciI	CCGC	3 cut(s)	83, 147, 306
AclWI	GGATC	1 cut(s)	701
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	3 cut(s)	160, 530, 726
AcyI	GRCGYC	2 cut(s)	5, 189
AfaI	GTAC	2 cut(s)	42, 341
AfiI	CCNNNNNNNGG	5 cut(s)	254, 292, 306, 309, 653
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	3 cut(s)	503, 581, 637
AhdI	GACNNNNNGTC	1 cut(s)	289
AjiI	CACGTC	1 cut(s)	324
AjnI	CCWGG	3 cut(s)	279, 505, 559
AleI	CACNNNNGTG	1 cut(s)	155
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	3 cut(s)	133, 359, 425
AluI	AGCT	3 cut(s)	133, 359, 425
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	12, 174
AlwI	GGATC	1 cut(s)	701
AoxI	GGCC	2 cut(s)	117, 538
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	3 cut(s)	160, 530, 726
ArsI	GACNNNNNNTTYG	2 cut(s)	669, 701
AspLEI	GCGC	2 cut(s)	141, 659
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	307, 628, 701
AvaII	GGWCC	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	110
BccI	CCATC	2 cut(s)	368, 602
BceAI	ACGGC	2 cut(s)	104, 670
BciT130I	CCWGG	3 cut(s)	281, 507, 561
BcoDI	GTCTC	2 cut(s)	12, 174
BfmI	CTRYAG	2 cut(s)	14, 101
BisI	GCNGC	2 cut(s)	14, 148
BlsI	GCNGC	2 cut(s)	15, 149
Bme1390I	CCNGG	3 cut(s)	281, 507, 561
Bme18I	GGWCC	1 cut(s)	283
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgBI	CACGTC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	260, 285, 558
BmrFI	CCNGG	3 cut(s)	281, 507, 561
BmsI	GCATC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	2 cut(s)	5, 189
BsaJI	CCNNGG	4 cut(s)	111, 232, 351, 506
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	5 cut(s)	254, 292, 306, 309, 653
BseBI	CCWGG	3 cut(s)	281, 507, 561
BseDI	CCNNGG	4 cut(s)	111, 232, 351, 506
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	5 cut(s)	254, 292, 306, 309, 653
BseMII	CTCAG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	731
BseX3I	CGGCCG	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	372
Bsh1285I	CGRYCG	1 cut(s)	541
BshFI	GGCC	2 cut(s)	119, 540
BsiEI	CGRYCG	1 cut(s)	541
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	91, 262, 303
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	5 cut(s)	254, 292, 306, 309, 653
BsmAI	GTCTC	2 cut(s)	12, 174
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	119, 540
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	3 cut(s)	21, 208, 706
BspACI	CCGC	3 cut(s)	83, 147, 306
BspANI	GGCC	2 cut(s)	119, 540
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	3 cut(s)	260, 285, 558
BspMAI	CTGCAG	2 cut(s)	18, 105
BspPI	GGATC	1 cut(s)	701
BssECI	CCNNGG	4 cut(s)	111, 232, 351, 506
BssMI	GATC	3 cut(s)	21, 208, 706
BssNI	GRCGYC	2 cut(s)	5, 189
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	3 cut(s)	281, 507, 561
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	177, 654
BstACI	GRCGYC	2 cut(s)	5, 189
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	727
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	141, 659
BstKTI	GATC	3 cut(s)	24, 211, 709
BstMAI	GTCTC	2 cut(s)	12, 174
BstMBI	GATC	3 cut(s)	21, 208, 706
BstMCI	CGRYCG	1 cut(s)	541
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 147, 212
BstNI	CCWGG	3 cut(s)	281, 507, 561
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	3 cut(s)	279, 505, 559
BstSFI	CTRYAG	2 cut(s)	14, 101
BstUI	CGCG	1 cut(s)	372
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BstZI	CGGCCG	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	119, 540
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	387
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	727
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	1 cut(s)	666
CfoI	GCGC	2 cut(s)	141, 659
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	2 cut(s)	64, 197
Csp6I	GTAC	2 cut(s)	41, 340
CviAII	CATG	3 cut(s)	166, 454, 613
CviQI	GTAC	2 cut(s)	41, 340
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	3 cut(s)	23, 210, 708
DpnII	GATC	3 cut(s)	21, 208, 706
DriI	GACNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	538
EagI	CGGCCG	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	177, 654
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	2 cut(s)	177, 654
EclXI	CGGCCG	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	283
Eco52I	CGGCCG	1 cut(s)	538
Eco91I	GGTNACC	1 cut(s)	295
EcoO65I	GGTNACC	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	160
EcoRII	CCWGG	3 cut(s)	279, 505, 559
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	169, 457, 616
FaiI	YATR	9 cut(s)	136, 167, 270, 275, 363, 384, 455, 585, 614
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	3 cut(s)	165, 453, 612
FauI	CCCGC	1 cut(s)	299
Fnu4HI	GCNGC	2 cut(s)	14, 148
Fsp4HI	GCNGC	2 cut(s)	14, 148
GlaI	GCGC	2 cut(s)	140, 658
GluI	GCNGC	2 cut(s)	14, 148
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	119, 540
HapII	CCGG	3 cut(s)	91, 262, 303
HgaI	GACGC	2 cut(s)	64, 197
HhaI	GCGC	2 cut(s)	141, 659
Hin1I	GRCGYC	2 cut(s)	5, 189
Hin1II	CATG	3 cut(s)	169, 457, 616
Hin6I	GCGC	2 cut(s)	139, 657
HinP1I	GCGC	2 cut(s)	139, 657
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	2 cut(s)	35, 548
HpaII	CCGG	3 cut(s)	91, 262, 303
HphI	GGTGA	3 cut(s)	307, 628, 701
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	3 cut(s)	70, 225, 251
Hpy8I	GTNNAC	1 cut(s)	342
Hpy99I	CGWCG	5 cut(s)	188, 191, 257, 292, 295
HpyAV	CCTTC	2 cut(s)	85, 721
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	2 cut(s)	16, 103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 147, 212
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	323
Hsp92I	GRCGYC	2 cut(s)	5, 189
Hsp92II	CATG	3 cut(s)	169, 457, 616
HspAI	GCGC	2 cut(s)	139, 657
Kzo9I	GATC	3 cut(s)	21, 208, 706
LmnI	GCTCC	1 cut(s)	562
LweI	GCATC	1 cut(s)	416
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	4 cut(s)	52, 295, 629, 689
MalI	GATC	3 cut(s)	23, 210, 708
MboI	GATC	3 cut(s)	21, 208, 706
MboII	GAAGA	4 cut(s)	31, 164, 470, 641
MfeI	CAATTG	1 cut(s)	637
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	6 cut(s)	160, 220, 401, 530, 637, 726
MmeI	TCCRAC	2 cut(s)	87, 553
MseI	TTAA	4 cut(s)	393, 477, 528, 730
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	91, 262, 303
MspR9I	CCNGG	3 cut(s)	281, 507, 561
MunI	CAATTG	1 cut(s)	637
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	3 cut(s)	281, 507, 561
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	3 cut(s)	55, 147, 212
NdeII	GATC	3 cut(s)	21, 208, 706
NlaIII	CATG	3 cut(s)	169, 457, 616
NlaIV	GGNNCC	3 cut(s)	260, 285, 558
NmeAIII	GCCGAG	2 cut(s)	213, 566
NmuCI	GTSAC	3 cut(s)	52, 295, 689
OliI	CACNNNNGTG	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	35, 548
PflFI	GACNNNGTC	1 cut(s)	677
PkrI	GCNGC	2 cut(s)	15, 149
PsiI	TTATAA	1 cut(s)	384
Psp6I	CCWGG	3 cut(s)	279, 505, 559
PspEI	GGTNACC	1 cut(s)	295
PspGI	CCWGG	3 cut(s)	279, 505, 559
PspN4I	GGNNCC	3 cut(s)	260, 285, 558
PspPI	GGNCC	1 cut(s)	283
PstI	CTGCAG	2 cut(s)	18, 105
PsuI	RGATCY	1 cut(s)	706
PsyI	GACNNNGTC	1 cut(s)	677
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	42, 341
RsaNI	GTAC	2 cut(s)	41, 340
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	4 cut(s)	393, 477, 528, 730
SatI	GCNGC	2 cut(s)	14, 148
Sau3AI	GATC	3 cut(s)	21, 208, 706
Sau96I	GGNCC	1 cut(s)	283
ScrFI	CCNGG	3 cut(s)	281, 507, 561
SduI	GDGCHC	1 cut(s)	110
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	2 cut(s)	14, 101
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	6 cut(s)	160, 220, 401, 530, 637, 726
SsiI	CCGC	3 cut(s)	83, 147, 306
SspI	AATATT	1 cut(s)	475
StyD4I	CCNGG	3 cut(s)	279, 505, 559
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	4 cut(s)	24, 252, 667, 714
TasI	AATT	6 cut(s)	160, 220, 401, 530, 637, 726
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	35, 548
Tru1I	TTAA	4 cut(s)	393, 477, 528, 730
Tru9I	TTAA	4 cut(s)	393, 477, 528, 730
TscAI	CASTG	1 cut(s)	666
TseFI	GTSAC	3 cut(s)	52, 295, 689
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	3 cut(s)	52, 295, 689
TspDTI	ATGAA	2 cut(s)	164, 603
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	666
Tth111I	GACNNNGTC	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	3 cut(s)	160, 530, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.