Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006007

Physical Location & Seq

Genomic Coordinates Forward (+)

48641915 .. 48646516

Gene Structure 4602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG267000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGGTGATCTTCAGCCCTGTAACCGTCGGTCAGGTCTCGTTTTTGCTTGGAATTTTACCTATTATTGGAGCTTGGATTTACTCTGAGTTCTTGGAGTACAAGAAGAATTCACTCTCCACCAAACTTAGGCACTCTGAGGTGAGTTTAGTTGAAGTTGAGAAGGATGTGGTTAAAGAGGACGACAGAGCTGTGTTGTTGGAGGGAGGAGGTCTCCAATCTGCCTCTCCCAAAGCTCGAACTTCGGCTACCGCCTCGCCGATTTTCAGGTTCATGTTGATGGATGAGGCATTTTTGATTGAAAATCGGTTGACGCTAAGAGCACTATCTGAATTTAGTGTTCTCTTAGCATACTTCTACCTGTGTGATCGGACAGATTTCTTCAACTCGTCTAAAAAGAGTTACAACCGGGATCTTTTCATATTTCTGTACTTCCTTCTCATCATAGTGTCAGCCATTACTTCTTTCACGATACATAATGAGAAGTCTCCACTCACTGGGAAATCCATACTATATTTGAATAGGCATCAAACTGAGGAGTGGAAGGGCTGGATGCAGGTGTTATTTTTGTTGTACCACTATTTTGCTGCAGCAGAATTTTATAATGCAATTCGAGTGTTCATTGCTGGATATGTGTGGATGACTGGATTTGGAAACTTTTCTTATTACTATGTTCGCAAGGATTTCAGCCTAGCAAGGTTCGCACAGATGATGTGGCGGCTTAATTTCTTGGTATTGTTTTGCTGTGTGGTCCTCAACAACAGTTACGTGCTGTACTACATCTGTCCTATGCACACTCTATTCACTCTTATGGTTTATGGGGCGCTTGGTATCTTGAACAAGTATAATGAGATTGGGTCGGTGATAGCGTTAAAAATCATTGCTTGCTTCTTGGTTGTTATCTTGGTATGGGAAATACCGGGAGTGTTTGAAGTGCTTTGGAGCCCATTTACATTCCTCTTTGCCTACACAGACCCTGCAAAACCAAATCTACCAGTCTTGCATGAGTGGCATTTCCGCTCTGGCCTTGATCGTTACATATGGATAATTGGAATGATATATGCTTACTATCATCCAACGGTTGAGCGGTGGATGGAGAAATTGGAGGAAGCAGATTGGAAGCGTAGAATGTCAATCAAAACAGCTGTTTCTGTAGCATCCCTGACGGTGGGATATCTATGGTTTGAGTATATATACAAGATGGACAAGCTCACTTACAATAAATATCATCCTTATACCTCATGGATTCCAATAACGGTCTATATATCTTTGCGAAATGTCACCCAGCAATTCCGGAGCTACTCTTTGACCCTTTTTGCATGGCTTGGAAAGATAACACTGGAGACCTACATCTTGCAATTCCACGTGTGGTTAAGATCAGCTGTTCCTGATGGTCAGCCAAAGTTATTGCTTGCGATGATCCCAGACTACCCAATGTTGAACTTCATGCTCACTTCTTCCATTTATGTTGCAATCTCTTACAGACTTTTTGACCTGACAAATACATTGAAAATAGCATTTGTACCCAGCAAAGATAACAAGCGCCTTGTCAACAACATAGTTACAGCCACAGCTGTTTCATGTGCATTATACTTCATCTCTTTTGTCTTCCTAAAAATCCCCCAAATGCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009834 GO:0009987 GO:0010033 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0042221 GO:0042546 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0098542 GO:1901576 GO:1901700 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

544

Amino Acids

63.5

Weight (kDa)

9.01

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cas1_AcylT	PF07779	103 - 515	5.1e-91	10 TM Acyl Transferase domain found in Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06550 AT3G06550 AT3G06550
fragaria_vesca	FvH4_4g20470 FvH4_4g20470 FvH4_4g20470 FvH4_4g20470
malus_domestica	MD13G1149400.v1.1 MD16G1149700.v1.1
prunus_persica	Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1
pyrus_communis	pycom13g12860 pycom16g12820
rosa_chinensis	RchiOBHm_Chr4g0425951
rosa_laevigata	RLG00000007329
rosa_multiflora	Rmu_sc0002091.1_g000007 Rmu_ssc0000281.1_g000024
rosa_roxburghii	Rroxscaffold_5G00367960
rosa_rugosa	Rorug04G0207500 Rorug04G0207500 Rorug04G0207600
rosa_samantha	Rh4AG264500 Rh4BG270400 Rh4DG267000
rosa_wichuraiana	Rw4G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AarI	CACCTGC	1 cut(s)	544
Acc36I	ACCTGC	1 cut(s)	544
AccB7I	CCANNNNNTGG	2 cut(s)	494, 1627
AccBSI	CCGCTC	2 cut(s)	1017, 1084
AccIII	TCCGGA	1 cut(s)	1290
AciI	CCGC	4 cut(s)	249, 715, 1015, 1084
AclWI	GGATC	2 cut(s)	417, 1411
AcsI	RAATTY	4 cut(s)	51, 106, 329, 593
AcvI	CACGTG	1 cut(s)	1363
AfaI	GTAC	5 cut(s)	98, 428, 572, 773, 1521
AfiI	CCNNNNNNNGG	5 cut(s)	65, 126, 494, 1165, 1627
AflIII	ACRYGT	1 cut(s)	1362
AgsI	TTSAA	8 cut(s)	152, 299, 382, 517, 835, 929, 1438, 1507
AluBI	AGCT	8 cut(s)	71, 188, 233, 1142, 1207, 1296, 1379, 1571
AluI	AGCT	8 cut(s)	71, 188, 233, 1142, 1207, 1296, 1379, 1571
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	4 cut(s)	40, 215, 489, 1334
AlwI	GGATC	2 cut(s)	417, 1411
AlwNI	CAGNNNCTG	1 cut(s)	974
Aor13HI	TCCGGA	1 cut(s)	1290
AoxI	GGCC	1 cut(s)	1021
ApeKI	GCWGC	2 cut(s)	584, 587
ApoI	RAATTY	4 cut(s)	51, 106, 329, 593
Asp700I	GAANNNNTTC	1 cut(s)	655
AspLEI	GCGC	2 cut(s)	823, 1542
AspS9I	GGNCC	1 cut(s)	748
AsuC2I	CCSGG	2 cut(s)	407, 918
AsuHPI	GGTGA	4 cut(s)	16, 151, 871, 1270
AvaII	GGWCC	1 cut(s)	748
BanII	GRGCYC	1 cut(s)	944
BbrPI	CACGTG	1 cut(s)	1363
BbsI	GAAGAC	1 cut(s)	1597
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	571, 599
BccI	CCATC	4 cut(s)	271, 1084, 1192, 1382
BcnI	CCSGG	2 cut(s)	407, 918
BcoDI	GTCTC	4 cut(s)	40, 215, 489, 1334
BfaI	CTAG	1 cut(s)	689
BfmI	CTRYAG	2 cut(s)	585, 1149
BfoI	RGCGCY	2 cut(s)	824, 1543
BfuAI	ACCTGC	1 cut(s)	544
BisI	GCNGC	3 cut(s)	585, 588, 716
BlsI	GCNGC	3 cut(s)	586, 589, 717
Bme1390I	CCNGG	2 cut(s)	407, 918
Bme18I	GGWCC	1 cut(s)	748
BmgT120I	GGNCC	1 cut(s)	748
BmiI	GGNNCC	1 cut(s)	941
BmrFI	CCNGG	2 cut(s)	407, 918
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	3 cut(s)	532, 540, 1163
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	1597
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	1 cut(s)	1358
BpuMI	CCSGG	2 cut(s)	407, 918
BsaAI	YACGTR	2 cut(s)	766, 1363
BsaI	GGTCTC	3 cut(s)	40, 215, 1334
BsaWI	WCCGGW	1 cut(s)	1290
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 126, 494, 1165, 1627
Bse1I	ACTGG	4 cut(s)	499, 646, 992, 1341
Bse3DI	GCAATG	2 cut(s)	618, 876
BseAI	TCCGGA	1 cut(s)	1290
BseGI	GGATG	8 cut(s)	169, 286, 555, 642, 1069, 1095, 1154, 1225
BseLI	CCNNNNNNNGG	5 cut(s)	65, 126, 494, 1165, 1627
BseMI	GCAATG	2 cut(s)	618, 876
BseMII	CTCAG	3 cut(s)	75, 126, 522
BseNI	ACTGG	4 cut(s)	499, 646, 992, 1341
BseRI	GAGGAG	2 cut(s)	219, 548
BseXI	GCAGC	2 cut(s)	571, 599
BseYI	CCCAGC	2 cut(s)	1281, 1523
BshFI	GGCC	1 cut(s)	1023
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	406, 917, 1291
BslI	CCNNNNNNNGG	5 cut(s)	65, 126, 494, 1165, 1627
BsmAI	GTCTC	4 cut(s)	40, 215, 489, 1334
BsnI	GGCC	1 cut(s)	1023
Bso31I	GGTCTC	3 cut(s)	40, 215, 1334
Bsp1286I	GDGCHC	2 cut(s)	322, 944
Bsp13I	TCCGGA	1 cut(s)	1290
Bsp143I	GATC	6 cut(s)	6, 364, 409, 1027, 1373, 1416
BspACI	CCGC	4 cut(s)	249, 715, 1015, 1084
BspANI	GGCC	1 cut(s)	1023
BspCNI	CTCAG	3 cut(s)	76, 127, 523
BspEI	TCCGGA	1 cut(s)	1290
BspLI	GGNNCC	1 cut(s)	941
BspMAI	CTGCAG	1 cut(s)	589
BspMI	ACCTGC	1 cut(s)	544
BspPI	GGATC	2 cut(s)	417, 1411
BspTNI	GGTCTC	3 cut(s)	40, 215, 1334
BsrBI	CCGCTC	2 cut(s)	1017, 1084
BsrDI	GCAATG	2 cut(s)	618, 876
BsrI	ACTGG	4 cut(s)	499, 646, 992, 1341
BssMI	GATC	6 cut(s)	6, 364, 409, 1027, 1373, 1416
Bst4CI	ACNGT	5 cut(s)	25, 761, 1078, 1165, 1255
BstBAI	YACGTR	2 cut(s)	766, 1363
BstC8I	GCNNGC	2 cut(s)	883, 1410
BstDEI	CTNAG	6 cut(s)	84, 125, 135, 314, 343, 531
BstF5I	GGATG	8 cut(s)	169, 286, 555, 642, 1069, 1095, 1154, 1225
BstH2I	RGCGCY	2 cut(s)	824, 1543
BstHHI	GCGC	2 cut(s)	823, 1542
BstKTI	GATC	6 cut(s)	9, 367, 412, 1030, 1376, 1419
BstMAI	GTCTC	4 cut(s)	40, 215, 489, 1334
BstMBI	GATC	6 cut(s)	6, 364, 409, 1027, 1373, 1416
BstMWI	GCNNNNNNNGC	2 cut(s)	698, 1006
BstSCI	CCNGG	2 cut(s)	405, 916
BstSFI	CTRYAG	2 cut(s)	585, 1149
BstV1I	GCAGC	2 cut(s)	571, 599
BstV2I	GAAGAC	1 cut(s)	1597
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	1023
BtgZI	GCGATG	1 cut(s)	1427
BtsCI	GGATG	8 cut(s)	169, 286, 555, 642, 1069, 1095, 1154, 1225
BtsIMutI	CAGTG	2 cut(s)	492, 1334
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	2 cut(s)	883, 1410
CaiI	CAGNNNCTG	1 cut(s)	974
CfoI	GCGC	2 cut(s)	823, 1542
Cfr13I	GGNCC	1 cut(s)	748
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	5 cut(s)	97, 427, 571, 772, 1520
CviAII	CATG	6 cut(s)	271, 1001, 1239, 1317, 1444, 1578
CviQI	GTAC	5 cut(s)	97, 427, 571, 772, 1520
DdeI	CTNAG	6 cut(s)	84, 125, 135, 314, 343, 531
DpnI	GATC	6 cut(s)	8, 366, 411, 1029, 1375, 1418
DpnII	GATC	6 cut(s)	6, 364, 409, 1027, 1373, 1416
Eco24I	GRGCYC	1 cut(s)	944
Eco31I	GGTCTC	3 cut(s)	40, 215, 1334
Eco32I	GATATC	1 cut(s)	1172
Eco47I	GGWCC	1 cut(s)	748
Eco72I	CACGTG	1 cut(s)	1363
EcoRI	GAATTC	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	1172
EcoT38I	GRGCYC	1 cut(s)	944
FaeI	CATG	6 cut(s)	274, 1004, 1242, 1320, 1447, 1581
FatI	CATG	6 cut(s)	270, 1000, 1238, 1316, 1443, 1577
FauNDI	CATATG	1 cut(s)	1037
Fnu4HI	GCNGC	3 cut(s)	585, 588, 716
FokI	GGATG	8 cut(s)	176, 293, 562, 649, 1056, 1102, 1141, 1212
FriOI	GRGCYC	1 cut(s)	944
Fsp4HI	GCNGC	3 cut(s)	585, 588, 716
FspBI	CTAG	1 cut(s)	689
GlaI	GCGC	2 cut(s)	822, 1541
GluI	GCNGC	3 cut(s)	585, 588, 716
GsaI	CCCAGC	2 cut(s)	1285, 1527
GsuI	CTGGAG	1 cut(s)	1358
HaeII	RGCGCY	2 cut(s)	824, 1543
HaeIII	GGCC	1 cut(s)	1023
HapII	CCGG	3 cut(s)	406, 917, 1291
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	2 cut(s)	823, 1542
Hin1II	CATG	6 cut(s)	274, 1004, 1242, 1320, 1447, 1581
Hin6I	GCGC	2 cut(s)	821, 1540
HinP1I	GCGC	2 cut(s)	821, 1540
HincII	GTYRAC	2 cut(s)	309, 1549
HindII	GTYRAC	2 cut(s)	309, 1549
HinfI	GANTC	1 cut(s)	1243
HpaII	CCGG	3 cut(s)	406, 917, 1291
HphI	GGTGA	4 cut(s)	16, 151, 871, 1270
Hpy166II	GTNNAC	2 cut(s)	309, 1549
Hpy188I	TCNGA	4 cut(s)	85, 136, 328, 369
Hpy188III	TCNNGA	4 cut(s)	466, 832, 1291, 1385
Hpy8I	GTNNAC	2 cut(s)	309, 1549
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	154, 443, 535
HpyCH4III	ACNGT	5 cut(s)	25, 761, 1078, 1165, 1255
HpyCH4IV	ACGT	2 cut(s)	765, 1362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	698, 1006
HpyF3I	CTNAG	6 cut(s)	84, 125, 135, 314, 343, 531
HpySE526I	ACGT	2 cut(s)	765, 1362
Hsp92II	CATG	6 cut(s)	274, 1004, 1242, 1320, 1447, 1581
HspAI	GCGC	2 cut(s)	821, 1540
Kpn2I	TCCGGA	1 cut(s)	1290
Kzo9I	GATC	6 cut(s)	6, 364, 409, 1027, 1373, 1416
LmnI	GCTCC	3 cut(s)	68, 939, 1293
Lsp1109I	GCAGC	2 cut(s)	571, 599
LweI	GCATC	3 cut(s)	532, 540, 1163
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	2 cut(s)	765, 1362
MaeIII	GTNAC	6 cut(s)	19, 398, 761, 1031, 1276, 1558
MalI	GATC	6 cut(s)	8, 366, 411, 1029, 1375, 1418
MbiI	CCGCTC	2 cut(s)	1017, 1084
MboI	GATC	6 cut(s)	6, 364, 409, 1027, 1373, 1416
MboII	GAAGA	4 cut(s)	115, 370, 1446, 1597
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	2 cut(s)	322, 944
MmeI	TCCRAC	2 cut(s)	177, 1097
MroI	TCCGGA	1 cut(s)	1290
MroXI	GAANNNNTTC	1 cut(s)	655
MseI	TTAA	4 cut(s)	171, 720, 869, 1370
MslI	CAYNNNNRTG	3 cut(s)	275, 443, 806
MspA1I	CMGCKG	3 cut(s)	1142, 1379, 1571
MspI	CCGG	3 cut(s)	406, 917, 1291
MspR9I	CCNGG	2 cut(s)	407, 918
MwoI	GCNNNNNNNGC	2 cut(s)	698, 1006
NciI	CCSGG	2 cut(s)	407, 918
NdeI	CATATG	1 cut(s)	1037
NdeII	GATC	6 cut(s)	6, 364, 409, 1027, 1373, 1416
NlaIII	CATG	6 cut(s)	274, 1004, 1242, 1320, 1447, 1581
NlaIV	GGNNCC	1 cut(s)	941
NmuCI	GTSAC	1 cut(s)	1276
PaqCI	CACCTGC	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	863
PdmI	GAANNNNTTC	1 cut(s)	655
PfeI	GAWTC	1 cut(s)	1243
PflMI	CCANNNNNTGG	2 cut(s)	494, 1627
PkrI	GCNGC	3 cut(s)	586, 589, 717
PmaCI	CACGTG	1 cut(s)	1363
PmlI	CACGTG	1 cut(s)	1363
Ppu21I	YACGTR	2 cut(s)	766, 1363
PsiI	TTATAA	1 cut(s)	600
PspCI	CACGTG	1 cut(s)	1363
PspFI	CCCAGC	2 cut(s)	1281, 1523
PspN4I	GGNNCC	1 cut(s)	941
PspPI	GGNCC	1 cut(s)	748
PsrI	GAACNNNNNNTAC	2 cut(s)	229, 261
PstI	CTGCAG	1 cut(s)	589
PstNI	CAGNNNCTG	1 cut(s)	974
PsuI	RGATCY	1 cut(s)	409
PvuII	CAGCTG	3 cut(s)	1142, 1379, 1571
RsaI	GTAC	5 cut(s)	98, 428, 572, 773, 1521
RsaNI	GTAC	5 cut(s)	97, 427, 571, 772, 1520
RseI	CAYNNNNRTG	3 cut(s)	275, 443, 806
SaqAI	TTAA	4 cut(s)	171, 720, 869, 1370
SatI	GCNGC	3 cut(s)	585, 588, 716
Sau3AI	GATC	6 cut(s)	6, 364, 409, 1027, 1373, 1416
Sau96I	GGNCC	1 cut(s)	748
ScrFI	CCNGG	2 cut(s)	407, 918
SduI	GDGCHC	2 cut(s)	322, 944
SfaNI	GCATC	3 cut(s)	532, 540, 1163
SfcI	CTRYAG	2 cut(s)	585, 1149
SinI	GGWCC	1 cut(s)	748
SmiMI	CAYNNNNRTG	3 cut(s)	275, 443, 806
SsiI	CCGC	4 cut(s)	249, 715, 1015, 1084
SspMI	CTAG	1 cut(s)	689
StyD4I	CCNGG	2 cut(s)	405, 916
TaaI	ACNGT	5 cut(s)	25, 761, 1078, 1165, 1255
TaiI	ACGT	2 cut(s)	768, 1365
TaqI	TCGA	2 cut(s)	235, 610
TaqII	GACCGA	1 cut(s)	17
TatI	WGTACW	3 cut(s)	96, 426, 771
TauI	GCSGC	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	1243
Tru1I	TTAA	4 cut(s)	171, 720, 869, 1370
Tru9I	TTAA	4 cut(s)	171, 720, 869, 1370
TscAI	CASTG	2 cut(s)	499, 1341
TseFI	GTSAC	1 cut(s)	1276
TseI	GCWGC	2 cut(s)	584, 587
Tsp45I	GTSAC	1 cut(s)	1276
TspDTI	ATGAA	6 cut(s)	259, 406, 607, 1432, 1566, 1582
TspRI	CASTG	2 cut(s)	499, 1341
Van91I	CCANNNNNTGG	2 cut(s)	494, 1627
VpaK11BI	GGWCC	1 cut(s)	748
XapI	RAATTY	4 cut(s)	51, 106, 329, 593
XmnI	GAANNNNTTC	1 cut(s)	655
XspI	CTAG	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.