AT3G06550

CAS1 domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
2038978 .. 2043169
4192 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06550.1

Sequence Viewer

Length: 1638 bp
ATGGCGAGTTCAAGCCCTGTTACACCTGGGCTAATGTCGGTGGTGTTCGGGATTGTGCCGGTGATCGTGGCTTGGCTATACTCTGAGTATCTGCACTATGCTAAATACTCGGTCTCCGCCAAAACTAGGCACTCTGATGTCAATTTGGTGGAAATTGCGAAAGATTTTGTTAAAGAAGATGACAAAGCTCTTTTAATAGAAGATGGAGGTGGTCTCCAATCAGCTTCTCCTAGAGCCAAAGGCCCGACCACACATTCTCCTCTCATCAGGTTTGTCCTCTTGGATGAGTCGTTCTTGGTTGAGAACAGGCTGACTTTAAGGGCAATAATTGAGTTTGCAGTACTTATGGTATACTTTTACATATGTGACCGCACAGATGTCTTCAATTCATCAAAGAAGAGTTACAACCGGGATCTCTTTCTGTTCCTTTACTTCCTTCTCATCATCGTTTCAGCGATAACTTCATTCACGATACATACTGATAAATCACCATTCAGCGGAAAAGCCATCATGTACTTGAATAGGCATCAAACCGAGGAGTGGAAAGGCTGGATGCAGGTCCTTTTCTTGATGTACCACTACTTTGCTGCTGCAGAGTACTATAATGCGATCCGTGTTTTCATTGCTTGCTATGTATGGATGACTGGATTTGGGAATTTTTCTTATTATTACATTCGCAAGGACTTTAGCCTTGCAAGGTTTGCACAGATGATGTGGCGGCTAAATTTCCTGGTCATATTCTCCTGCATCGTCCTCAACAACAGTTACATGCTATACTACATCTGCCCAATGCACACTCTGTTTACTCTAATGGTCTATGGGGCACTTGGTATTATGAGCAAGTATAATGAGATGGGTTCAGTCATAGCTGCCAAATTTTTTGCCTGCTTCGTTGTTGTTATCATCGTTTGGGAAATTCCTGGCGTTTTTGAATGGATTTGGAGTCCATTTACACTCCTAATGGGTTACAATGATCCCGCAAAACCTCAGCTTCCCCTCTTGCATGAGTGGCATTTCCGCTCTGGACTTGATCGGTACATATGGATAATCGGGATGCTATATGCATACTACCACCCAACTGTTGAAAGTTGGATGGATAAACTGGAGGAAGCTGAGATGAAATTCAGGGTGGCTATCAAAACATCTGTGGCACTGATAGCACTAACGGTGGGATATTTTTGGTACGAGTATATATACAAGATGGACAAGTTAACTTACAACAAATATCATCCTTACACCTCTTGGATTCCAATAACTGTTTATATCTGTCTCCGGAACATCACCCAGTCTTTCCGCGGCTACAGTTTGACCCTTCTGGCGTGGCTTGGAAAGATAACACTGGAGACATATATCTCCCAGTTTCATATATGGCTCAGATCTGGAGTTCCTGATGGTCAACCCAAATTACTACTATCTCTTGTCCCGGATTACCCATTGTTGAACTTCATGCTCACTACTTCGATTTACGTCGCTATCTCTTATAGGCTCTTTGAGCTTACCAACACTTTGAAAACAGCCTTCATACCAACCAAGGACGACAAACGCCTTGTCTACAACACGATCTCAGCACTCATAATCTGCACTTGTCTCTACTTTTTCTCATTTATTCTTATCACAATTCCCCAAAAACTGGTGTGA

Protein Analysis

545

Amino Acids

63.61

Weight (kDa)

8.71

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cas1_AcylT PF07779 105 - 514 4.7e-90 10 TM Acyl Transferase domain found in Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 547
AccB7I CCANNNNNTGG 1 cut(s) 1630
AccBSI CCGCTC 1 cut(s) 1020
AccI GTMKAC 2 cut(s) 351, 1551
AccII CGCG 1 cut(s) 1296
AccIII TCCGGA 1 cut(s) 1272
AciI CCGC 8 cut(s) 117, 370, 498, 718, 978, 1018, 1294, 1296
AclWI GGATC 3 cut(s) 420, 604, 968
AcsI RAATTY 5 cut(s) 655, 724, 875, 915, 1121
AfaI GTAC 6 cut(s) 342, 515, 575, 599, 1037, 1184
AfiI CCNNNNNNNGG 4 cut(s) 126, 497, 540, 1630
AgsI TTSAA 7 cut(s) 12, 385, 520, 932, 1085, 1441, 1510
AjnI CCWGG 3 cut(s) 25, 729, 919
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
AluBI AGCT 6 cut(s) 188, 224, 869, 991, 1112, 1495
AluI AGCT 6 cut(s) 188, 224, 869, 991, 1112, 1495
Alw26I GTCTC 5 cut(s) 118, 218, 1274, 1337, 1592
AlwI GGATC 3 cut(s) 420, 604, 968
Aor13HI TCCGGA 1 cut(s) 1272
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 3 cut(s) 587, 590, 869
ApoI RAATTY 5 cut(s) 655, 724, 875, 915, 1121
ArsI GACNNNNNNTTYG 2 cut(s) 1533, 1565
AspS9I GGNCC 2 cut(s) 242, 559
AsuC2I CCSGG 2 cut(s) 410, 1424
AsuHPI GGTGA 3 cut(s) 73, 480, 1273
AvaII GGWCC 1 cut(s) 559
BaeGI GKGCMC 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 373
BbvCI CCTCAGC 1 cut(s) 987
BbvI GCAGC 3 cut(s) 574, 577, 856
BccI CCATC 6 cut(s) 197, 515, 847, 1087, 1195, 1385
BciT130I CCWGG 3 cut(s) 27, 731, 921
BcnI CCSGG 2 cut(s) 410, 1424
BcoDI GTCTC 5 cut(s) 118, 218, 1274, 1337, 1592
BfaI CTAG 2 cut(s) 126, 231
BfmI CTRYAG 2 cut(s) 591, 1300
BfuAI ACCTGC 1 cut(s) 547
BglII AGATCT 1 cut(s) 1376
BisI GCNGC 5 cut(s) 588, 591, 719, 870, 1297
BlsI GCNGC 5 cut(s) 589, 592, 720, 871, 1298
BmcAI AGTACT 2 cut(s) 342, 599
Bme1390I CCNGG 5 cut(s) 27, 410, 731, 921, 1424
Bme18I GGWCC 1 cut(s) 559
BmgT120I GGNCC 2 cut(s) 242, 559
BmrFI CCNGG 5 cut(s) 27, 410, 731, 921, 1424
BmrI ACTGGG 2 cut(s) 1279, 1351
BmsI GCATC 4 cut(s) 535, 543, 756, 1044
BmuI ACTGGG 2 cut(s) 1279, 1351
BpiI GAAGAC 1 cut(s) 373
BplI GAGNNNNNCTC 2 cut(s) 198, 230
BpmI CTGGAG 3 cut(s) 1124, 1361, 1401
Bpu10I CCTNAGC 1 cut(s) 987
BpuMI CCSGG 2 cut(s) 410, 1424
BsaI GGTCTC 2 cut(s) 118, 218
BsaJI CCNNGG 4 cut(s) 26, 534, 1294, 1530
BsaWI WCCGGW 1 cut(s) 1272
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 241, 271
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 497, 540, 1630
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 6 cut(s) 649, 1107, 1285, 1344, 1357, 1635
Bse3DI GCAATG 1 cut(s) 621
BseAI TCCGGA 1 cut(s) 1272
BseBI CCWGG 3 cut(s) 27, 731, 921
BseDI CCNNGG 4 cut(s) 26, 534, 1294, 1530
BseGI GGATG 6 cut(s) 289, 558, 645, 1059, 1098, 1228
BseLI CCNNNNNNNGG 4 cut(s) 126, 497, 540, 1630
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 5 cut(s) 75, 1001, 1104, 1387, 1578
BseNI ACTGG 6 cut(s) 649, 1107, 1285, 1344, 1357, 1635
BseRI GAGGAG 2 cut(s) 249, 551
BseSI GKGCMC 1 cut(s) 826
BseXI GCAGC 3 cut(s) 574, 577, 856
BsgI GTGCAG 2 cut(s) 77, 1564
Bsh1236I CGCG 1 cut(s) 1296
BshFI GGCC 1 cut(s) 243
BsiSI CCGG 4 cut(s) 59, 409, 1273, 1424
BslFI GGGAC 1 cut(s) 1406
BslI CCNNNNNNNGG 4 cut(s) 126, 497, 540, 1630
BsmAI GTCTC 5 cut(s) 118, 218, 1274, 1337, 1592
BsmFI GGGAC 1 cut(s) 1406
BsnI GGCC 1 cut(s) 243
Bso31I GGTCTC 2 cut(s) 118, 218
Bsp1286I GDGCHC 1 cut(s) 826
Bsp13I TCCGGA 1 cut(s) 1272
Bsp143I GATC 7 cut(s) 63, 412, 609, 973, 1030, 1376, 1560
BspACI CCGC 8 cut(s) 117, 370, 498, 718, 978, 1018, 1294, 1296
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 5 cut(s) 76, 1000, 1105, 1386, 1577
BspEI TCCGGA 1 cut(s) 1272
BspFNI CGCG 1 cut(s) 1296
BspMAI CTGCAG 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 3 cut(s) 420, 604, 968
BspTNI GGTCTC 2 cut(s) 118, 218
BsrBI CCGCTC 1 cut(s) 1020
BsrDI GCAATG 1 cut(s) 621
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 6 cut(s) 649, 1107, 1285, 1344, 1357, 1635
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 4 cut(s) 26, 534, 1294, 1530
BssMI GATC 7 cut(s) 63, 412, 609, 973, 1030, 1376, 1560
BssNAI GTATAC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 1530
Bst1107I GTATAC 1 cut(s) 352
Bst2UI CCWGG 3 cut(s) 27, 731, 921
Bst4CI ACNGT 5 cut(s) 764, 1081, 1168, 1258, 1304
Bst6I CTCTTC 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 701
BstC8I GCNNGC 2 cut(s) 628, 886
BstDEI CTNAG 5 cut(s) 84, 987, 1113, 1373, 1564
BstDSI CCRYGG 1 cut(s) 1294
BstF5I GGATG 6 cut(s) 289, 558, 645, 1059, 1098, 1228
BstFNI CGCG 1 cut(s) 1296
BstKTI GATC 7 cut(s) 66, 415, 612, 976, 1033, 1379, 1563
BstMAI GTCTC 5 cut(s) 118, 218, 1274, 1337, 1592
BstMBI GATC 7 cut(s) 63, 412, 609, 973, 1030, 1376, 1560
BstMWI GCNNNNNNNGC 4 cut(s) 701, 1009, 1157, 1492
BstNI CCWGG 3 cut(s) 27, 731, 921
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 5 cut(s) 25, 408, 729, 919, 1422
BstSFI CTRYAG 2 cut(s) 591, 1300
BstSLI GKGCMC 1 cut(s) 826
BstUI CGCG 1 cut(s) 1296
BstV1I GCAGC 3 cut(s) 574, 577, 856
BstV2I GAAGAC 1 cut(s) 373
BstX2I RGATCY 2 cut(s) 412, 1376
BstYI RGATCY 2 cut(s) 412, 1376
BstZ17I GTATAC 1 cut(s) 352
BsuRI GGCC 1 cut(s) 243
BtgI CCRYGG 1 cut(s) 1294
BtsCI GGATG 6 cut(s) 289, 558, 645, 1059, 1098, 1228
BtsIMutI CAGTG 2 cut(s) 1151, 1337
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 2 cut(s) 628, 886
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 242, 559
Cfr42I CCGCGG 1 cut(s) 1297
Csp6I GTAC 6 cut(s) 341, 514, 574, 598, 1036, 1183
CviAII CATG 4 cut(s) 511, 769, 1004, 1447
CviQI GTAC 6 cut(s) 341, 514, 574, 598, 1036, 1183
DdeI CTNAG 5 cut(s) 84, 987, 1113, 1373, 1564
DpnI GATC 7 cut(s) 65, 414, 611, 975, 1032, 1378, 1562
DpnII GATC 7 cut(s) 63, 412, 609, 973, 1030, 1376, 1560
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
EciI GGCGGA 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 1530
Eco31I GGTCTC 2 cut(s) 118, 218
Eco47I GGWCC 1 cut(s) 559
EcoO109I RGGNCCY 1 cut(s) 559
EcoRII CCWGG 3 cut(s) 25, 729, 919
EcoT14I CCWWGG 1 cut(s) 1530
EcoT22I ATGCAT 1 cut(s) 1066
ErhI CCWWGG 1 cut(s) 1530
FaeI CATG 4 cut(s) 514, 772, 1007, 1450
FaqI GGGAC 1 cut(s) 1406
FatI CATG 4 cut(s) 510, 768, 1003, 1446
FauI CCCGC 1 cut(s) 985
FauNDI CATATG 2 cut(s) 362, 1040
FblI GTMKAC 2 cut(s) 351, 1551
Fnu4HI GCNGC 5 cut(s) 588, 591, 719, 870, 1297
FokI GGATG 6 cut(s) 296, 565, 652, 1066, 1105, 1215
Fsp4HI GCNGC 5 cut(s) 588, 591, 719, 870, 1297
FspBI CTAG 2 cut(s) 126, 231
GluI GCNGC 5 cut(s) 588, 591, 719, 870, 1297
GsuI CTGGAG 3 cut(s) 1124, 1361, 1401
HaeIII GGCC 1 cut(s) 243
HapII CCGG 4 cut(s) 59, 409, 1273, 1424
Hin1II CATG 4 cut(s) 514, 772, 1007, 1450
HincII GTYRAC 2 cut(s) 1212, 1397
HindII GTYRAC 2 cut(s) 1212, 1397
HinfI GANTC 3 cut(s) 287, 943, 1246
HpaI GTTAAC 1 cut(s) 1212
HpaII CCGG 4 cut(s) 59, 409, 1273, 1424
HphI GGTGA 3 cut(s) 73, 480, 1273
Hpy166II GTNNAC 5 cut(s) 352, 804, 1212, 1397, 1552
Hpy188I TCNGA 3 cut(s) 85, 136, 1376
Hpy188III TCNNGA 8 cut(s) 49, 469, 568, 1023, 1051, 1273, 1380, 1388
Hpy8I GTNNAC 5 cut(s) 352, 804, 1212, 1397, 1552
Hpy99I CGWCG 1 cut(s) 1472
HpyAV CCTTC 3 cut(s) 446, 1322, 1528
HpyCH4III ACNGT 5 cut(s) 764, 1081, 1168, 1258, 1304
HpyCH4IV ACGT 1 cut(s) 1467
HpyF10VI GCNNNNNNNGC 4 cut(s) 701, 1009, 1157, 1492
HpyF3I CTNAG 5 cut(s) 84, 987, 1113, 1373, 1564
HpySE526I ACGT 1 cut(s) 1467
Hsp92II CATG 4 cut(s) 514, 772, 1007, 1450
Kpn2I TCCGGA 1 cut(s) 1272
KspAI GTTAAC 1 cut(s) 1212
KspI CCGCGG 1 cut(s) 1297
Kzo9I GATC 7 cut(s) 63, 412, 609, 973, 1030, 1376, 1560
Lsp1109I GCAGC 3 cut(s) 574, 577, 856
LweI GCATC 4 cut(s) 535, 543, 756, 1044
MaeI CTAG 2 cut(s) 126, 231
MaeII ACGT 1 cut(s) 1467
MaeIII GTNAC 5 cut(s) 19, 365, 401, 764, 965
MalI GATC 7 cut(s) 65, 414, 611, 975, 1032, 1378, 1562
MbiI CCGCTC 1 cut(s) 1020
MboI GATC 7 cut(s) 63, 412, 609, 973, 1030, 1376, 1560
MboII GAAGA 4 cut(s) 188, 212, 373, 409
MflI RGATCY 2 cut(s) 412, 1376
MhlI GDGCHC 1 cut(s) 826
MlyI GAGTC 2 cut(s) 296, 952
MmeI TCCRAC 1 cut(s) 1070
MnlI CCTC 9 cut(s) 200, 270, 287, 529, 764, 996, 1007, 1099, 1249
Mph1103I ATGCAT 1 cut(s) 1066
MroI TCCGGA 1 cut(s) 1272
MseI TTAA 4 cut(s) 171, 194, 317, 1211
MslI CAYNNNNRTG 1 cut(s) 135
MspA1I CMGCKG 2 cut(s) 498, 1296
MspI CCGG 4 cut(s) 59, 409, 1273, 1424
MspR9I CCNGG 5 cut(s) 27, 410, 731, 921, 1424
MvaI CCWGG 3 cut(s) 27, 731, 921
MvnI CGCG 1 cut(s) 1296
MwoI GCNNNNNNNGC 4 cut(s) 701, 1009, 1157, 1492
NciI CCSGG 2 cut(s) 410, 1424
NdeI CATATG 2 cut(s) 362, 1040
NdeII GATC 7 cut(s) 63, 412, 609, 973, 1030, 1376, 1560
NlaIII CATG 4 cut(s) 514, 772, 1007, 1450
NmuCI GTSAC 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 1066
NspI RCATGY 1 cut(s) 772
PfeI GAWTC 1 cut(s) 1246
PflMI CCANNNNNTGG 1 cut(s) 1630
PfoI TCCNGGA 1 cut(s) 1422
PkrI GCNGC 5 cut(s) 589, 592, 720, 871, 1298
PleI GAGTC 2 cut(s) 295, 951
PpsI GAGTC 2 cut(s) 295, 951
PpuMI RGGWCCY 1 cut(s) 559
Psp5II RGGWCCY 1 cut(s) 559
Psp6I CCWGG 3 cut(s) 25, 729, 919
PspGI CCWGG 3 cut(s) 25, 729, 919
PspPI GGNCC 2 cut(s) 242, 559
PspPPI RGGWCCY 1 cut(s) 559
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 2 cut(s) 412, 1376
RsaI GTAC 6 cut(s) 342, 515, 575, 599, 1037, 1184
RsaNI GTAC 6 cut(s) 341, 514, 574, 598, 1036, 1183
RseI CAYNNNNRTG 1 cut(s) 135
SacII CCGCGG 1 cut(s) 1297
SaqAI TTAA 4 cut(s) 171, 194, 317, 1211
SatI GCNGC 5 cut(s) 588, 591, 719, 870, 1297
Sau3AI GATC 7 cut(s) 63, 412, 609, 973, 1030, 1376, 1560
Sau96I GGNCC 2 cut(s) 242, 559
ScaI AGTACT 2 cut(s) 342, 599
SchI GAGTC 2 cut(s) 296, 952
ScrFI CCNGG 5 cut(s) 27, 410, 731, 921, 1424
SduI GDGCHC 1 cut(s) 826
SfaNI GCATC 4 cut(s) 535, 543, 756, 1044
SfcI CTRYAG 2 cut(s) 591, 1300
Sfr303I CCGCGG 1 cut(s) 1297
SgrBI CCGCGG 1 cut(s) 1297
SinI GGWCC 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 135
SsiI CCGC 8 cut(s) 117, 370, 498, 718, 978, 1018, 1294, 1296
SspMI CTAG 2 cut(s) 126, 231
StyD4I CCNGG 5 cut(s) 25, 408, 729, 919, 1422
StyI CCWWGG 1 cut(s) 1530
TaaI ACNGT 5 cut(s) 764, 1081, 1168, 1258, 1304
TaiI ACGT 1 cut(s) 1470
TaqI TCGA 1 cut(s) 1460
TaqII GACCGA 1 cut(s) 100
TatI WGTACW 3 cut(s) 340, 513, 597
TauI GCSGC 2 cut(s) 721, 1299
TfiI GAWTC 1 cut(s) 1246
Tru1I TTAA 4 cut(s) 171, 194, 317, 1211
Tru9I TTAA 4 cut(s) 171, 194, 317, 1211
TscAI CASTG 2 cut(s) 1158, 1344
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 3 cut(s) 587, 590, 869
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 7 cut(s) 378, 453, 610, 1133, 1352, 1435, 1510
TspGWI ACGGA 1 cut(s) 602
TspRI CASTG 2 cut(s) 1158, 1344
Van91I CCANNNNNTGG 1 cut(s) 1630
VpaK11BI GGWCC 1 cut(s) 559
XapI RAATTY 5 cut(s) 655, 724, 875, 915, 1121
XceI RCATGY 1 cut(s) 772
XmiI GTMKAC 2 cut(s) 351, 1551
XspI CTAG 2 cut(s) 126, 231
ZrmI AGTACT 2 cut(s) 342, 599
Zsp2I ATGCAT 1 cut(s) 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.