Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006007

Physical Location & Seq

Genomic Coordinates Forward (+)

49772568 .. 49777303

Gene Structure 4736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGGTGATCTTCAGCCCTGTAACTGTCGGTCAGGTCTCGCTTTTGCTTGGAATTTTACCTATTATTGGAGCTTGGATTTACTCAGAGTTCTTGGAGTACAAGAAGAATTCACTCTCCACCACCAAACATAGGCACTCTGAAGTGAGTTTAGTTGAAGTTGAGAAAGATGCGGTTAAAGAGGACGACAGAGCTGTGTTGTTGGAGGGAGGAGGTCTCCAATCTGCCTCTCCCAAAGCTCGAACTTCGGCTACCGCCTCGCCGATTTTCAGGTTCATGTTGATGGATGAGGCATTTTTGATCGAAAATCGGTTGACGCTAAGAGCAATATCTGAATTTAGTGTTCTCTTAGCATACTTCTACCTGTGTGATCGTACAGATTTCTTCAACTCGTCTAAAAAGAGTTACAACCGGGATCTTTTCATATTTCTGTACTTCCTTCTCATCATAGTGTCAGCCATTACTTCTTTCACGATACATAATGAGAAGTCTCCACTCACTGGGAAATCCATACTATATTTGAATAGGCATCAAACTGAGGAGTGGAAGGGCTGGATGCAGGTGTTATTTTTGTTGTACCACTATTTTGCTGCAGCAGAATTTTATAATGCAATTCGAGTGTTTATTGCTGGATATGTGTGGATGACTGGATTTGGAAACTTTTCTTATTACTATGTTCGCAAGGATTTCAGCCTAGCAAGGTTCGCACAGATGATGTGGCGGCTTAATTTCTTGGTATTGTTTTGCTGTGTGGTCCTCAACAACAGTTACGTGCTGTACTACATCTGTCCTATGCACACTCTATTCACTCTTATGGTTTATGGGGCGCTTGGTATCTTGAACAAGTATAATGAGATTGGGTCGGTGATAGCGTTAAAAATCATTGCTTGCTTCTTGGTTGTTATCTTGGTATGGGAAATACCGGGAGTGTTTGAAGTGCTTTGGAGCCCATTTACATTCCTCCTTGCCTACACAGACCCTGCAAAACCAAATCTACCAGTCTTGCATGAGTGGCATTTCCGCTCTGGCCTTGATCGTTACATATGGATAATTGGAATGATATATGCTTACTATCATCCAACGGTTGAGCGGTGGATGGAGAAATTGGAGGAAGCAGATTGGAAGCGTAGAATGTCAATCAAAACAGCTGTTTCTGTAGTATCCCTGACGGTGGGATATCTATGGTTTGAGTATATATACAAGATGGACAAGCTCACTTACAATAAATATCATCCTTATACCTCATGGATTCCAATAACGGTCTATATATCTTTGCGAAATGTCACCCAGCAATTCCGGAGCTACTCTTTGACCCTTTTTGCATGGCTTGGAAAGATAACACTGGAGACCTACATCTTGCAATTCCACGTGTGGTTAAGATCAGCTGTTCCTGATGGTCAGCCAAAGTTGTTGCTTGCGATGATCCCAGACTACCCAATGTTGAACTTCATGCTCACTTCTTCCATTTATGTTGCAATCTCTTACAGACTTTTTGACCTGACAAATACATTGAAAATAGCATTTGTACCCAGCAAAGATAACAAGCGCCTTGTCAACAACATAGTTACAGCCACAGCTGTTTCATGTGCATTATACTTCATTTCTTTTGTCTTCCTAAAAATCCCCCAAATGCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009834 GO:0009987 GO:0010033 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0042221 GO:0042546 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0098542 GO:1901576 GO:1901700 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

545

Amino Acids

63.56

Weight (kDa)

9.01

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cas1_AcylT	PF07779	104 - 516	1.6e-91	10 TM Acyl Transferase domain found in Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06550 AT3G06550 AT3G06550
fragaria_vesca	FvH4_4g20470 FvH4_4g20470 FvH4_4g20470 FvH4_4g20470
malus_domestica	MD13G1149400.v1.1 MD16G1149700.v1.1
prunus_persica	Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1
pyrus_communis	pycom13g12860 pycom16g12820
rosa_chinensis	RchiOBHm_Chr4g0425951
rosa_laevigata	RLG00000007329
rosa_multiflora	Rmu_sc0002091.1_g000007 Rmu_ssc0000281.1_g000024
rosa_roxburghii	Rroxscaffold_5G00367960
rosa_rugosa	Rorug04G0207500 Rorug04G0207500 Rorug04G0207600
rosa_samantha	Rh4AG264500 Rh4BG270400 Rh4DG267000
rosa_wichuraiana	Rw4G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
AarI	CACCTGC	1 cut(s)	547
Acc36I	ACCTGC	1 cut(s)	547
AccB7I	CCANNNNNTGG	2 cut(s)	497, 1630
AccBSI	CCGCTC	2 cut(s)	1020, 1087
AccIII	TCCGGA	1 cut(s)	1293
AciI	CCGC	5 cut(s)	170, 252, 718, 1018, 1087
AclWI	GGATC	2 cut(s)	420, 1414
AcsI	RAATTY	4 cut(s)	51, 106, 332, 596
AcuI	CTGAAG	1 cut(s)	159
AcvI	CACGTG	1 cut(s)	1366
AfaI	GTAC	6 cut(s)	98, 373, 431, 575, 776, 1524
AfiI	CCNNNNNNNGG	5 cut(s)	65, 129, 497, 1168, 1630
AflIII	ACRYGT	1 cut(s)	1365
AgsI	TTSAA	7 cut(s)	155, 385, 520, 838, 932, 1441, 1510
AluBI	AGCT	8 cut(s)	71, 191, 236, 1145, 1210, 1299, 1382, 1574
AluI	AGCT	8 cut(s)	71, 191, 236, 1145, 1210, 1299, 1382, 1574
Alw26I	GTCTC	4 cut(s)	40, 218, 492, 1337
AlwI	GGATC	2 cut(s)	420, 1414
AlwNI	CAGNNNCTG	1 cut(s)	977
Aor13HI	TCCGGA	1 cut(s)	1293
AoxI	GGCC	1 cut(s)	1024
ApeKI	GCWGC	2 cut(s)	587, 590
ApoI	RAATTY	4 cut(s)	51, 106, 332, 596
Asp700I	GAANNNNTTC	1 cut(s)	658
AspLEI	GCGC	2 cut(s)	826, 1545
AspS9I	GGNCC	1 cut(s)	751
AsuC2I	CCSGG	2 cut(s)	410, 921
AsuHPI	GGTGA	3 cut(s)	16, 874, 1273
AvaII	GGWCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	947
BbrPI	CACGTG	1 cut(s)	1366
BbsI	GAAGAC	1 cut(s)	1600
BbvI	GCAGC	2 cut(s)	574, 602
BccI	CCATC	4 cut(s)	274, 1087, 1195, 1385
BciVI	GTATCC	1 cut(s)	1168
BcnI	CCSGG	2 cut(s)	410, 921
BcoDI	GTCTC	4 cut(s)	40, 218, 492, 1337
BfaI	CTAG	1 cut(s)	692
BfmI	CTRYAG	2 cut(s)	588, 1152
BfoI	RGCGCY	2 cut(s)	827, 1546
BfuAI	ACCTGC	1 cut(s)	547
BfuI	GTATCC	1 cut(s)	1168
BisI	GCNGC	3 cut(s)	588, 591, 719
BlsI	GCNGC	3 cut(s)	589, 592, 720
Bme1390I	CCNGG	2 cut(s)	410, 921
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	1 cut(s)	751
BmiI	GGNNCC	1 cut(s)	944
BmrFI	CCNGG	2 cut(s)	410, 921
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	3 cut(s)	157, 535, 543
BmuI	ACTGGG	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	1600
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
BpmI	CTGGAG	1 cut(s)	1361
BpuMI	CCSGG	2 cut(s)	410, 921
BsaAI	YACGTR	2 cut(s)	769, 1366
BsaI	GGTCTC	3 cut(s)	40, 218, 1337
BsaWI	WCCGGW	1 cut(s)	1293
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 129, 497, 1168, 1630
Bse1I	ACTGG	4 cut(s)	502, 649, 995, 1344
Bse3DI	GCAATG	1 cut(s)	879
BseAI	TCCGGA	1 cut(s)	1293
BseGI	GGATG	6 cut(s)	289, 558, 645, 1072, 1098, 1228
BseLI	CCNNNNNNNGG	5 cut(s)	65, 129, 497, 1168, 1630
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	2 cut(s)	96, 525
BseNI	ACTGG	4 cut(s)	502, 649, 995, 1344
BseRI	GAGGAG	2 cut(s)	222, 551
BseXI	GCAGC	2 cut(s)	574, 602
BseYI	CCCAGC	2 cut(s)	1284, 1526
BshFI	GGCC	1 cut(s)	1026
BsiSI	CCGG	3 cut(s)	409, 920, 1294
BslI	CCNNNNNNNGG	5 cut(s)	65, 129, 497, 1168, 1630
BsmAI	GTCTC	4 cut(s)	40, 218, 492, 1337
BsnI	GGCC	1 cut(s)	1026
Bso31I	GGTCTC	3 cut(s)	40, 218, 1337
Bsp1286I	GDGCHC	1 cut(s)	947
Bsp13I	TCCGGA	1 cut(s)	1293
Bsp143I	GATC	7 cut(s)	6, 297, 367, 412, 1030, 1376, 1419
BspACI	CCGC	5 cut(s)	170, 252, 718, 1018, 1087
BspANI	GGCC	1 cut(s)	1026
BspCNI	CTCAG	2 cut(s)	95, 526
BspEI	TCCGGA	1 cut(s)	1293
BspLI	GGNNCC	1 cut(s)	944
BspMAI	CTGCAG	1 cut(s)	592
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	2 cut(s)	420, 1414
BspTNI	GGTCTC	3 cut(s)	40, 218, 1337
BsrBI	CCGCTC	2 cut(s)	1020, 1087
BsrDI	GCAATG	1 cut(s)	879
BsrI	ACTGG	4 cut(s)	502, 649, 995, 1344
BssMI	GATC	7 cut(s)	6, 297, 367, 412, 1030, 1376, 1419
Bst4CI	ACNGT	5 cut(s)	25, 764, 1081, 1168, 1258
BstBAI	YACGTR	2 cut(s)	769, 1366
BstC8I	GCNNGC	2 cut(s)	886, 1413
BstDEI	CTNAG	4 cut(s)	82, 317, 346, 534
BstF5I	GGATG	6 cut(s)	289, 558, 645, 1072, 1098, 1228
BstH2I	RGCGCY	2 cut(s)	827, 1546
BstHHI	GCGC	2 cut(s)	826, 1545
BstKTI	GATC	7 cut(s)	9, 300, 370, 415, 1033, 1379, 1422
BstMAI	GTCTC	4 cut(s)	40, 218, 492, 1337
BstMBI	GATC	7 cut(s)	6, 297, 367, 412, 1030, 1376, 1419
BstMWI	GCNNNNNNNGC	2 cut(s)	701, 1009
BstSCI	CCNGG	2 cut(s)	408, 919
BstSFI	CTRYAG	2 cut(s)	588, 1152
BstV1I	GCAGC	2 cut(s)	574, 602
BstV2I	GAAGAC	1 cut(s)	1600
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuI	GTATCC	1 cut(s)	1168
BsuRI	GGCC	1 cut(s)	1026
BtgZI	GCGATG	1 cut(s)	1430
BtsCI	GGATG	6 cut(s)	289, 558, 645, 1072, 1098, 1228
BtsIMutI	CAGTG	2 cut(s)	495, 1337
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	886, 1413
CaiI	CAGNNNCTG	1 cut(s)	977
CfoI	GCGC	2 cut(s)	826, 1545
Cfr13I	GGNCC	1 cut(s)	751
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	6 cut(s)	97, 372, 430, 574, 775, 1523
CviAII	CATG	6 cut(s)	274, 1004, 1242, 1320, 1447, 1581
CviQI	GTAC	6 cut(s)	97, 372, 430, 574, 775, 1523
DdeI	CTNAG	4 cut(s)	82, 317, 346, 534
DpnI	GATC	7 cut(s)	8, 299, 369, 414, 1032, 1378, 1421
DpnII	GATC	7 cut(s)	6, 297, 367, 412, 1030, 1376, 1419
Eco24I	GRGCYC	1 cut(s)	947
Eco31I	GGTCTC	3 cut(s)	40, 218, 1337
Eco32I	GATATC	1 cut(s)	1175
Eco47I	GGWCC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	159
Eco72I	CACGTG	1 cut(s)	1366
EcoRI	GAATTC	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	1175
EcoT38I	GRGCYC	1 cut(s)	947
FaeI	CATG	6 cut(s)	277, 1007, 1245, 1323, 1450, 1584
FatI	CATG	6 cut(s)	273, 1003, 1241, 1319, 1446, 1580
FauNDI	CATATG	1 cut(s)	1040
Fnu4HI	GCNGC	3 cut(s)	588, 591, 719
FokI	GGATG	6 cut(s)	296, 565, 652, 1059, 1105, 1215
FriOI	GRGCYC	1 cut(s)	947
Fsp4HI	GCNGC	3 cut(s)	588, 591, 719
FspBI	CTAG	1 cut(s)	692
GlaI	GCGC	2 cut(s)	825, 1544
GluI	GCNGC	3 cut(s)	588, 591, 719
GsaI	CCCAGC	2 cut(s)	1288, 1530
GsuI	CTGGAG	1 cut(s)	1361
HaeII	RGCGCY	2 cut(s)	827, 1546
HaeIII	GGCC	1 cut(s)	1026
HapII	CCGG	3 cut(s)	409, 920, 1294
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	2 cut(s)	826, 1545
Hin1II	CATG	6 cut(s)	277, 1007, 1245, 1323, 1450, 1584
Hin6I	GCGC	2 cut(s)	824, 1543
HinP1I	GCGC	2 cut(s)	824, 1543
HincII	GTYRAC	2 cut(s)	312, 1552
HindII	GTYRAC	2 cut(s)	312, 1552
HinfI	GANTC	1 cut(s)	1246
HpaII	CCGG	3 cut(s)	409, 920, 1294
HphI	GGTGA	3 cut(s)	16, 874, 1273
Hpy166II	GTNNAC	2 cut(s)	312, 1552
Hpy188I	TCNGA	3 cut(s)	85, 139, 331
Hpy188III	TCNNGA	4 cut(s)	469, 835, 1294, 1388
Hpy8I	GTNNAC	2 cut(s)	312, 1552
HpyAV	CCTTC	2 cut(s)	446, 538
HpyCH4III	ACNGT	5 cut(s)	25, 764, 1081, 1168, 1258
HpyCH4IV	ACGT	2 cut(s)	768, 1365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	701, 1009
HpyF3I	CTNAG	4 cut(s)	82, 317, 346, 534
HpySE526I	ACGT	2 cut(s)	768, 1365
Hsp92II	CATG	6 cut(s)	277, 1007, 1245, 1323, 1450, 1584
HspAI	GCGC	2 cut(s)	824, 1543
Kpn2I	TCCGGA	1 cut(s)	1293
Kzo9I	GATC	7 cut(s)	6, 297, 367, 412, 1030, 1376, 1419
LmnI	GCTCC	3 cut(s)	68, 942, 1296
Lsp1109I	GCAGC	2 cut(s)	574, 602
LweI	GCATC	3 cut(s)	157, 535, 543
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	2 cut(s)	768, 1365
MaeIII	GTNAC	6 cut(s)	19, 401, 764, 1034, 1279, 1561
MalI	GATC	7 cut(s)	8, 299, 369, 414, 1032, 1378, 1421
MbiI	CCGCTC	2 cut(s)	1020, 1087
MboI	GATC	7 cut(s)	6, 297, 367, 412, 1030, 1376, 1419
MboII	GAAGA	4 cut(s)	115, 373, 1449, 1600
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	947
MmeI	TCCRAC	2 cut(s)	180, 1100
MroI	TCCGGA	1 cut(s)	1293
MroXI	GAANNNNTTC	1 cut(s)	658
MseI	TTAA	4 cut(s)	174, 723, 872, 1373
MslI	CAYNNNNRTG	3 cut(s)	278, 446, 809
MspA1I	CMGCKG	3 cut(s)	1145, 1382, 1574
MspI	CCGG	3 cut(s)	409, 920, 1294
MspR9I	CCNGG	2 cut(s)	410, 921
MwoI	GCNNNNNNNGC	2 cut(s)	701, 1009
NciI	CCSGG	2 cut(s)	410, 921
NdeI	CATATG	1 cut(s)	1040
NdeII	GATC	7 cut(s)	6, 297, 367, 412, 1030, 1376, 1419
NlaIII	CATG	6 cut(s)	277, 1007, 1245, 1323, 1450, 1584
NlaIV	GGNNCC	1 cut(s)	944
NmuCI	GTSAC	1 cut(s)	1279
PaqCI	CACCTGC	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	866
PdmI	GAANNNNTTC	1 cut(s)	658
PfeI	GAWTC	1 cut(s)	1246
PflMI	CCANNNNNTGG	2 cut(s)	497, 1630
PkrI	GCNGC	3 cut(s)	589, 592, 720
PmaCI	CACGTG	1 cut(s)	1366
PmlI	CACGTG	1 cut(s)	1366
Ppu21I	YACGTR	2 cut(s)	769, 1366
PsiI	TTATAA	1 cut(s)	603
PspCI	CACGTG	1 cut(s)	1366
PspFI	CCCAGC	2 cut(s)	1284, 1526
PspN4I	GGNNCC	1 cut(s)	944
PspPI	GGNCC	1 cut(s)	751
PsrI	GAACNNNNNNTAC	2 cut(s)	232, 264
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	977
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	3 cut(s)	1145, 1382, 1574
RsaI	GTAC	6 cut(s)	98, 373, 431, 575, 776, 1524
RsaNI	GTAC	6 cut(s)	97, 372, 430, 574, 775, 1523
RseI	CAYNNNNRTG	3 cut(s)	278, 446, 809
SaqAI	TTAA	4 cut(s)	174, 723, 872, 1373
SatI	GCNGC	3 cut(s)	588, 591, 719
Sau3AI	GATC	7 cut(s)	6, 297, 367, 412, 1030, 1376, 1419
Sau96I	GGNCC	1 cut(s)	751
ScrFI	CCNGG	2 cut(s)	410, 921
SduI	GDGCHC	1 cut(s)	947
SfaNI	GCATC	3 cut(s)	157, 535, 543
SfcI	CTRYAG	2 cut(s)	588, 1152
SinI	GGWCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	3 cut(s)	278, 446, 809
SsiI	CCGC	5 cut(s)	170, 252, 718, 1018, 1087
SspMI	CTAG	1 cut(s)	692
StyD4I	CCNGG	2 cut(s)	408, 919
TaaI	ACNGT	5 cut(s)	25, 764, 1081, 1168, 1258
TaiI	ACGT	2 cut(s)	771, 1368
TaqI	TCGA	3 cut(s)	238, 300, 613
TaqII	GACCGA	1 cut(s)	17
TatI	WGTACW	3 cut(s)	96, 429, 774
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	1 cut(s)	1246
Tru1I	TTAA	4 cut(s)	174, 723, 872, 1373
Tru9I	TTAA	4 cut(s)	174, 723, 872, 1373
TscAI	CASTG	2 cut(s)	502, 1344
TseFI	GTSAC	1 cut(s)	1279
TseI	GCWGC	2 cut(s)	587, 590
Tsp45I	GTSAC	1 cut(s)	1279
TspDTI	ATGAA	5 cut(s)	262, 409, 1435, 1569, 1585
TspRI	CASTG	2 cut(s)	502, 1344
Van91I	CCANNNNNTGG	2 cut(s)	497, 1630
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	4 cut(s)	51, 106, 332, 596
XmnI	GAANNNNTTC	1 cut(s)	658
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.