Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006007

Physical Location & Seq

Genomic Coordinates Reverse (-)

15858902 .. 15863100

Gene Structure 4199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007329

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGTGATCTTCAGCCCTGTAACTGTCGGTCAGGTCTCGGTTTTGCTTGGAATTTTACCTATTATTGGAGCTTGGATTTACTCAGAGTTCTTGGAGTACAAGAAGAATTCACTCTCCACCAAACTGCACTCTGAAGTGAGTTTAGTTGAAGTTGAGAAAGATGTGGTTAAAGAGGACGACAGAGCTGTGTTGTTGGAGGGAGGAGGTCTCCAATCTGCCTCTCCCAAAGCTCGAACTTCGGCTACCGCCTCGCCGATTTTCAGGTTCATGTTGATGGATGAGGCATTTTTGATCGAAAATCGGTTGACGCTAAGAAGTTACAACCGGGATCTTTTCATATTTCTGTACTTCCTTCTCATCATAGTGTCAGCCATTACTTCTTTCACAATACATAATGAGAAGTCTCCACTTACTGGGAAATCCATACTATATTTGAATAGGCATCAAACTGAGGAGTGGAAGGGCTGGATGCAGGTGTTATTTTTGTTGTACCACTATTTTGCTGCAGCAGAATTTTATAATGCAATTCGGGTATTCATTGCTGGATATGTGTGGATGACTGGATTTGGAAACTTTTCTTATTACTATGTTCGCAAGGATTTCAGCCTAGCAAGGTTCGCACAGATGATGTGGCGGCTTAATTTCTTGGTATTGTTTTGCTGTGTGGTCCTCAACAACAGTTACGTGCTGTACTACATCTGTCCTATGCACACTCTATTCACTCTTATGGTTTATGGGGCGCTTGGTATCTTGAACAAGTATAATGAGATTGGGTCGGTGATAGCGTTAAAAATCATTGCTTGCTTCTTGGTTGTTATCTTGGTATGGGAAATACCAGGAGTGTTTGAAGTGCTTTGGAGCCCATTTACATTCCTCCTTGCCTACACAGACCCTGCAAAACCAAATCTACCAGTCTTGCATGAGTGGCATTTCCGCTCTGGCCTTGATCGTTACATATGGATAATTGGAATGATATATGCTTACTATCATCCAACGGTTGAGCGGTGGATGGAGAAATTGGAGGAAGCAGATTGGAAGCGTAGAATGTCAATCAAAACAGCTGTTTCTGTAGTATCTCTGACGGTGGGATATCTATGGTTTGAGTATATTTACAAGATGGACAAGCTCACTTACAATAAATATCATCCTTATACCTCATGGATTCCAATAACGGTCTATATAACTTTGCGAAATGTCACCCAGCAATTCCGGAGCTACTCTTTGACCCTTTTTGCATGGCTTGGAAAGATAACACTGGAGACCTACATCTTGCAATTCCACGTGTGGTTAAGATCAGCTGTTCCTGATGGTCAGCCAAAGTTGTTGCTTGCAATGATCCCAGACTACCCAATGTTGAACTTCATGCTCACTTCTTCCATTTATGTTGCAATCTCTTACAGACTTTTTGACCTGACTAATACATTGAAAATAGCATTTGTACCCAGCAAAGATAACAAGCGCCTTGTCAACAACATAGTTACAGCCACAGCTGTTTCATGTGCATTATACTTCATCTCTTTTGTCTTCCTAAAAATCCCCCAAATGCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009832 GO:0009834 GO:0009987 GO:0010033 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0042221 GO:0042546 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:0098542 GO:1901576 GO:1901700 GO:1990937

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cas1_AcylT

Protein Analysis

518

Amino Acids

60.26

Weight (kDa)

9.0

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cas1_AcylT	PF07779	117 - 488	4.9e-79	10 TM Acyl Transferase domain found in Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06550 AT3G06550 AT3G06550
fragaria_vesca	FvH4_4g20470 FvH4_4g20470 FvH4_4g20470 FvH4_4g20470
malus_domestica	MD13G1149400.v1.1 MD16G1149700.v1.1
prunus_persica	Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1 Prupe.1G113400_v2.0.a1
pyrus_communis	pycom13g12860 pycom16g12820
rosa_chinensis	RchiOBHm_Chr4g0425951
rosa_laevigata	RLG00000007329
rosa_multiflora	Rmu_sc0002091.1_g000007 Rmu_ssc0000281.1_g000024
rosa_roxburghii	Rroxscaffold_5G00367960
rosa_rugosa	Rorug04G0207500 Rorug04G0207500 Rorug04G0207600
rosa_samantha	Rh4AG264500 Rh4BG270400 Rh4DG267000
rosa_wichuraiana	Rw4G022840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AarI	CACCTGC	1 cut(s)	463
Acc36I	ACCTGC	1 cut(s)	463
AccB7I	CCANNNNNTGG	2 cut(s)	413, 1546
AccBSI	CCGCTC	2 cut(s)	936, 1003
AccIII	TCCGGA	1 cut(s)	1209
AciI	CCGC	4 cut(s)	246, 634, 934, 1003
AclWI	GGATC	2 cut(s)	336, 1330
AcsI	RAATTY	3 cut(s)	51, 106, 512
AcuI	CTGAAG	1 cut(s)	153
AcvI	CACGTG	1 cut(s)	1282
AfaI	GTAC	5 cut(s)	98, 347, 491, 692, 1440
AfiI	CCNNNNNNNGG	3 cut(s)	65, 413, 1546
AflIII	ACRYGT	1 cut(s)	1281
AgsI	TTSAA	6 cut(s)	149, 436, 754, 848, 1357, 1426
AjnI	CCWGG	1 cut(s)	835
AluBI	AGCT	8 cut(s)	71, 185, 230, 1061, 1126, 1215, 1298, 1490
AluI	AGCT	8 cut(s)	71, 185, 230, 1061, 1126, 1215, 1298, 1490
Alw26I	GTCTC	4 cut(s)	40, 212, 408, 1253
AlwI	GGATC	2 cut(s)	336, 1330
AlwNI	CAGNNNCTG	1 cut(s)	893
Aor13HI	TCCGGA	1 cut(s)	1209
AoxI	GGCC	1 cut(s)	940
ApeKI	GCWGC	2 cut(s)	503, 506
ApoI	RAATTY	3 cut(s)	51, 106, 512
Asp700I	GAANNNNTTC	1 cut(s)	574
AspLEI	GCGC	2 cut(s)	742, 1461
AspS9I	GGNCC	1 cut(s)	667
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	3 cut(s)	16, 790, 1189
AvaII	GGWCC	1 cut(s)	667
BanII	GRGCYC	1 cut(s)	863
BbrPI	CACGTG	1 cut(s)	1282
BbsI	GAAGAC	1 cut(s)	1516
BbvI	GCAGC	2 cut(s)	490, 518
BccI	CCATC	4 cut(s)	268, 1003, 1111, 1301
BciT130I	CCWGG	1 cut(s)	837
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	4 cut(s)	40, 212, 408, 1253
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	2 cut(s)	504, 1068
BfoI	RGCGCY	2 cut(s)	743, 1462
BfuAI	ACCTGC	1 cut(s)	463
BisI	GCNGC	3 cut(s)	504, 507, 635
BlsI	GCNGC	3 cut(s)	505, 508, 636
Bme1390I	CCNGG	2 cut(s)	326, 837
Bme18I	GGWCC	1 cut(s)	667
BmgT120I	GGNCC	1 cut(s)	667
BmiI	GGNNCC	1 cut(s)	860
BmrFI	CCNGG	2 cut(s)	326, 837
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	2 cut(s)	451, 459
BmuI	ACTGGG	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	1516
BplI	GAGNNNNNCTC	2 cut(s)	192, 224
BpmI	CTGGAG	1 cut(s)	1277
BpuMI	CCSGG	1 cut(s)	326
BsaAI	YACGTR	2 cut(s)	685, 1282
BsaI	GGTCTC	3 cut(s)	40, 212, 1253
BsaWI	WCCGGW	1 cut(s)	1209
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 413, 1546
Bse1I	ACTGG	4 cut(s)	418, 565, 911, 1260
Bse3DI	GCAATG	3 cut(s)	537, 795, 1338
BseAI	TCCGGA	1 cut(s)	1209
BseBI	CCWGG	1 cut(s)	837
BseGI	GGATG	6 cut(s)	283, 474, 561, 988, 1014, 1144
BseLI	CCNNNNNNNGG	3 cut(s)	65, 413, 1546
BseMI	GCAATG	3 cut(s)	537, 795, 1338
BseMII	CTCAG	2 cut(s)	96, 441
BseNI	ACTGG	4 cut(s)	418, 565, 911, 1260
BseRI	GAGGAG	2 cut(s)	216, 467
BseXI	GCAGC	2 cut(s)	490, 518
BseYI	CCCAGC	2 cut(s)	1200, 1442
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	942
BsiSI	CCGG	2 cut(s)	325, 1210
BslI	CCNNNNNNNGG	3 cut(s)	65, 413, 1546
BsmAI	GTCTC	4 cut(s)	40, 212, 408, 1253
BsnI	GGCC	1 cut(s)	942
Bso31I	GGTCTC	3 cut(s)	40, 212, 1253
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp13I	TCCGGA	1 cut(s)	1209
Bsp143I	GATC	6 cut(s)	6, 291, 328, 946, 1292, 1335
BspACI	CCGC	4 cut(s)	246, 634, 934, 1003
BspANI	GGCC	1 cut(s)	942
BspCNI	CTCAG	2 cut(s)	95, 442
BspEI	TCCGGA	1 cut(s)	1209
BspLI	GGNNCC	1 cut(s)	860
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	2 cut(s)	336, 1330
BspTNI	GGTCTC	3 cut(s)	40, 212, 1253
BsrBI	CCGCTC	2 cut(s)	936, 1003
BsrDI	GCAATG	3 cut(s)	537, 795, 1338
BsrI	ACTGG	4 cut(s)	418, 565, 911, 1260
BssMI	GATC	6 cut(s)	6, 291, 328, 946, 1292, 1335
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	5 cut(s)	25, 680, 997, 1084, 1174
BstBAI	YACGTR	2 cut(s)	685, 1282
BstC8I	GCNNGC	2 cut(s)	802, 1329
BstDEI	CTNAG	3 cut(s)	82, 311, 450
BstF5I	GGATG	6 cut(s)	283, 474, 561, 988, 1014, 1144
BstH2I	RGCGCY	2 cut(s)	743, 1462
BstHHI	GCGC	2 cut(s)	742, 1461
BstKTI	GATC	6 cut(s)	9, 294, 331, 949, 1295, 1338
BstMAI	GTCTC	4 cut(s)	40, 212, 408, 1253
BstMBI	GATC	6 cut(s)	6, 291, 328, 946, 1292, 1335
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 925
BstNI	CCWGG	1 cut(s)	837
BstSCI	CCNGG	2 cut(s)	324, 835
BstSFI	CTRYAG	2 cut(s)	504, 1068
BstV1I	GCAGC	2 cut(s)	490, 518
BstV2I	GAAGAC	1 cut(s)	1516
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	942
BtsCI	GGATG	6 cut(s)	283, 474, 561, 988, 1014, 1144
BtsIMutI	CAGTG	1 cut(s)	1253
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	802, 1329
CaiI	CAGNNNCTG	1 cut(s)	893
CfoI	GCGC	2 cut(s)	742, 1461
Cfr13I	GGNCC	1 cut(s)	667
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	5 cut(s)	97, 346, 490, 691, 1439
CviAII	CATG	6 cut(s)	268, 920, 1158, 1236, 1363, 1497
CviQI	GTAC	5 cut(s)	97, 346, 490, 691, 1439
DdeI	CTNAG	3 cut(s)	82, 311, 450
DpnI	GATC	6 cut(s)	8, 293, 330, 948, 1294, 1337
DpnII	GATC	6 cut(s)	6, 291, 328, 946, 1292, 1335
Eco24I	GRGCYC	1 cut(s)	863
Eco31I	GGTCTC	3 cut(s)	40, 212, 1253
Eco32I	GATATC	1 cut(s)	1091
Eco47I	GGWCC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	153
Eco72I	CACGTG	1 cut(s)	1282
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	835
EcoRV	GATATC	1 cut(s)	1091
EcoT38I	GRGCYC	1 cut(s)	863
FaeI	CATG	6 cut(s)	271, 923, 1161, 1239, 1366, 1500
FatI	CATG	6 cut(s)	267, 919, 1157, 1235, 1362, 1496
FauNDI	CATATG	1 cut(s)	956
Fnu4HI	GCNGC	3 cut(s)	504, 507, 635
FokI	GGATG	6 cut(s)	290, 481, 568, 975, 1021, 1131
FriOI	GRGCYC	1 cut(s)	863
Fsp4HI	GCNGC	3 cut(s)	504, 507, 635
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	2 cut(s)	741, 1460
GluI	GCNGC	3 cut(s)	504, 507, 635
GsaI	CCCAGC	2 cut(s)	1204, 1446
GsuI	CTGGAG	1 cut(s)	1277
HaeII	RGCGCY	2 cut(s)	743, 1462
HaeIII	GGCC	1 cut(s)	942
HapII	CCGG	2 cut(s)	325, 1210
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	2 cut(s)	742, 1461
Hin1II	CATG	6 cut(s)	271, 923, 1161, 1239, 1366, 1500
Hin6I	GCGC	2 cut(s)	740, 1459
HinP1I	GCGC	2 cut(s)	740, 1459
HincII	GTYRAC	2 cut(s)	306, 1468
HindII	GTYRAC	2 cut(s)	306, 1468
HinfI	GANTC	1 cut(s)	1162
HpaII	CCGG	2 cut(s)	325, 1210
HphI	GGTGA	3 cut(s)	16, 790, 1189
Hpy166II	GTNNAC	2 cut(s)	306, 1468
Hpy188I	TCNGA	3 cut(s)	85, 133, 1080
Hpy188III	TCNNGA	3 cut(s)	751, 1210, 1304
Hpy8I	GTNNAC	2 cut(s)	306, 1468
HpyAV	CCTTC	2 cut(s)	362, 454
HpyCH4III	ACNGT	5 cut(s)	25, 680, 997, 1084, 1174
HpyCH4IV	ACGT	2 cut(s)	684, 1281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 925
HpyF3I	CTNAG	3 cut(s)	82, 311, 450
HpySE526I	ACGT	2 cut(s)	684, 1281
Hsp92II	CATG	6 cut(s)	271, 923, 1161, 1239, 1366, 1500
HspAI	GCGC	2 cut(s)	740, 1459
Kpn2I	TCCGGA	1 cut(s)	1209
Kzo9I	GATC	6 cut(s)	6, 291, 328, 946, 1292, 1335
LmnI	GCTCC	3 cut(s)	68, 858, 1212
Lsp1109I	GCAGC	2 cut(s)	490, 518
LweI	GCATC	2 cut(s)	451, 459
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	2 cut(s)	684, 1281
MaeIII	GTNAC	6 cut(s)	19, 317, 680, 950, 1195, 1477
MalI	GATC	6 cut(s)	8, 293, 330, 948, 1294, 1337
MbiI	CCGCTC	2 cut(s)	936, 1003
MboI	GATC	6 cut(s)	6, 291, 328, 946, 1292, 1335
MboII	GAAGA	3 cut(s)	115, 1365, 1516
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	863
MluCI	AATT	9 cut(s)	51, 106, 512, 525, 640, 963, 1016, 1205, 1274
MmeI	TCCRAC	2 cut(s)	174, 1016
MroI	TCCGGA	1 cut(s)	1209
MroXI	GAANNNNTTC	1 cut(s)	574
MseI	TTAA	4 cut(s)	168, 639, 788, 1289
MslI	CAYNNNNRTG	3 cut(s)	272, 362, 725
MspA1I	CMGCKG	3 cut(s)	1061, 1298, 1490
MspI	CCGG	2 cut(s)	325, 1210
MspR9I	CCNGG	2 cut(s)	326, 837
MvaI	CCWGG	1 cut(s)	837
MwoI	GCNNNNNNNGC	2 cut(s)	617, 925
NciI	CCSGG	1 cut(s)	326
NdeI	CATATG	1 cut(s)	956
NdeII	GATC	6 cut(s)	6, 291, 328, 946, 1292, 1335
NlaIII	CATG	6 cut(s)	271, 923, 1161, 1239, 1366, 1500
NlaIV	GGNNCC	1 cut(s)	860
NmuCI	GTSAC	1 cut(s)	1195
PaqCI	CACCTGC	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	782
PdmI	GAANNNNTTC	1 cut(s)	574
PfeI	GAWTC	1 cut(s)	1162
PflMI	CCANNNNNTGG	2 cut(s)	413, 1546
PkrI	GCNGC	3 cut(s)	505, 508, 636
PmaCI	CACGTG	1 cut(s)	1282
PmlI	CACGTG	1 cut(s)	1282
Ppu21I	YACGTR	2 cut(s)	685, 1282
PsiI	TTATAA	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	835
PspCI	CACGTG	1 cut(s)	1282
PspFI	CCCAGC	2 cut(s)	1200, 1442
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	1 cut(s)	860
PspPI	GGNCC	1 cut(s)	667
PsrI	GAACNNNNNNTAC	2 cut(s)	226, 258
PstI	CTGCAG	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	328
PvuII	CAGCTG	3 cut(s)	1061, 1298, 1490
RsaI	GTAC	5 cut(s)	98, 347, 491, 692, 1440
RsaNI	GTAC	5 cut(s)	97, 346, 490, 691, 1439
RseI	CAYNNNNRTG	3 cut(s)	272, 362, 725
SaqAI	TTAA	4 cut(s)	168, 639, 788, 1289
SatI	GCNGC	3 cut(s)	504, 507, 635
Sau3AI	GATC	6 cut(s)	6, 291, 328, 946, 1292, 1335
Sau96I	GGNCC	1 cut(s)	667
ScrFI	CCNGG	2 cut(s)	326, 837
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	2 cut(s)	451, 459
SfcI	CTRYAG	2 cut(s)	504, 1068
SinI	GGWCC	1 cut(s)	667
SmiMI	CAYNNNNRTG	3 cut(s)	272, 362, 725
Sse9I	AATT	9 cut(s)	51, 106, 512, 525, 640, 963, 1016, 1205, 1274
SsiI	CCGC	4 cut(s)	246, 634, 934, 1003
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	2 cut(s)	324, 835
TaaI	ACNGT	5 cut(s)	25, 680, 997, 1084, 1174
TaiI	ACGT	2 cut(s)	687, 1284
TaqI	TCGA	2 cut(s)	232, 294
TaqII	GACCGA	1 cut(s)	17
TasI	AATT	9 cut(s)	51, 106, 512, 525, 640, 963, 1016, 1205, 1274
TatI	WGTACW	3 cut(s)	96, 345, 690
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	1 cut(s)	1162
Tru1I	TTAA	4 cut(s)	168, 639, 788, 1289
Tru9I	TTAA	4 cut(s)	168, 639, 788, 1289
TscAI	CASTG	1 cut(s)	1260
TseFI	GTSAC	1 cut(s)	1195
TseI	GCWGC	2 cut(s)	503, 506
Tsp45I	GTSAC	1 cut(s)	1195
TspDTI	ATGAA	6 cut(s)	256, 325, 526, 1351, 1485, 1501
TspRI	CASTG	1 cut(s)	1260
Van91I	CCANNNNNTGG	2 cut(s)	413, 1546
VpaK11BI	GGWCC	1 cut(s)	667
XapI	RAATTY	3 cut(s)	51, 106, 512
XmnI	GAANNNNTTC	1 cut(s)	574
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.