pycom10g27140

cellular response to nitrogen starvation

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
28204303 .. 28204775
473 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g27140.2

Sequence Viewer

Length: 369 bp
ATGCTTTTGGTATATCATATGTTACGTGAGCTATCAGAAACAAAAGGGAGGAAGAGAAGAATTAAGATGTATAGCTTGTCTTGGATGAAGGGGTTCACATCTCACATGTTGTTGCAGGTCCTTTGTTTTTTCTTTTACTGCAGATACAACGTCCATCGTGATATGCCTCTCAGAGAATTTGTTGATTTTATTCGGTTAAGGATTCAGCATGAATCTCCATGGAAGAAGTCTTTGTTTGTCTACTTCAAGAACACCGAGCCTCCCATTGGTACCTCCTTGATGTCTGAAGTTGATAAGAAAAACAGGGTCGAAGACGGGTTTGTTCGCATCACCTACAGTGGAAAAGAGAGAGGAGGCTGGACCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

14.83

Weight (kDa)

9.9

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022361)

Species Orthologous Gene IDs
malus_domestica MD00G1034000.v1.1 MD03G1126000.v1.1 MD03G1126400.v1.1
pyrus_communis pycom10g27140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
Acc65I GGTACC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 266
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 2 cut(s) 31, 75
AluI AGCT 2 cut(s) 31, 75
ApoI RAATTY 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 92
Asp718I GGTACC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 118, 360
AsuHPI GGTGA 1 cut(s) 322
AvaII GGWCC 2 cut(s) 118, 360
BanI GGYRCC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 318
BccI CCATC 1 cut(s) 162
BfmI CTRYAG 2 cut(s) 139, 334
BfuAI ACCTGC 1 cut(s) 106
Bme18I GGWCC 2 cut(s) 118, 360
BmgT120I GGNCC 2 cut(s) 118, 360
BmiI GGNNCC 2 cut(s) 271, 362
BmsI GCATC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 366
BshNI GGYRCC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 266
Bsp19I CCATGG 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 271, 362
BspMAI CTGCAG 1 cut(s) 143
BspMI ACCTGC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 170
BstDSI CCRYGG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 90
BstNSI RCATGY 1 cut(s) 109
BstSFI CTRYAG 2 cut(s) 139, 334
BstV2I GAAGAC 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 218
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 343
BveI ACCTGC 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 118, 360
Csp6I GTAC 1 cut(s) 270
CviAII CATG 3 cut(s) 106, 209, 219
CviJI RGCY 4 cut(s) 31, 75, 259, 357
CviKI_1 RGCY 4 cut(s) 31, 75, 259, 357
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 118, 360
Eco57I CTGAAG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 3 cut(s) 109, 212, 222
FaiI YATR 8 cut(s) 13, 18, 20, 72, 107, 164, 210, 220
FatI CATG 3 cut(s) 105, 208, 218
FauNDI CATATG 1 cut(s) 18
FblI GTMKAC 1 cut(s) 240
FokI GGATG 1 cut(s) 97
Hin1II CATG 3 cut(s) 109, 212, 222
HinfI GANTC 2 cut(s) 202, 212
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 2 cut(s) 96, 241
Hpy188I TCNGA 3 cut(s) 37, 173, 286
Hpy188III TCNNGA 2 cut(s) 158, 247
Hpy8I GTNNAC 2 cut(s) 96, 241
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 2 cut(s) 25, 150
HpyCH4V TGCA 2 cut(s) 115, 141
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 2 cut(s) 25, 150
Hsp92II CATG 3 cut(s) 109, 212, 222
KpnI GGTACC 1 cut(s) 273
LpnPI CCDG 3 cut(s) 101, 289, 343
LweI GCATC 1 cut(s) 336
MaeII ACGT 2 cut(s) 25, 150
MaeIII GTNAC 1 cut(s) 21
MboII GAAGA 4 cut(s) 64, 69, 235, 323
MluCI AATT 2 cut(s) 60, 176
MnlI CCTC 6 cut(s) 42, 177, 270, 283, 344, 347
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 2 cut(s) 63, 197
NcoI CCATGG 1 cut(s) 218
NdeI CATATG 1 cut(s) 18
NlaIII CATG 3 cut(s) 109, 212, 222
NlaIV GGNNCC 2 cut(s) 271, 362
NspI RCATGY 1 cut(s) 109
PciI ACATGT 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 202, 212
Ppu21I YACGTR 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 118
PscI ACATGT 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 271, 362
PspPI GGNCC 2 cut(s) 118, 360
PspPPI RGGWCCY 1 cut(s) 118
PstI CTGCAG 1 cut(s) 143
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 63, 197
Sau96I GGNCC 2 cut(s) 118, 360
SetI ASST 7 cut(s) 28, 33, 77, 120, 153, 275, 335
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 2 cut(s) 139, 334
SinI GGWCC 2 cut(s) 118, 360
Sse9I AATT 2 cut(s) 60, 176
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 2 cut(s) 28, 153
TaqI TCGA 1 cut(s) 309
TasI AATT 2 cut(s) 60, 176
TfiI GAWTC 2 cut(s) 202, 212
Tru1I TTAA 2 cut(s) 63, 197
Tru9I TTAA 2 cut(s) 63, 197
TscAI CASTG 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 101, 225
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 2 cut(s) 118, 360
XapI RAATTY 1 cut(s) 176
XceI RCATGY 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.