Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0021903

Physical Location & Seq

Genomic Coordinates Reverse (-)

28693344 .. 28695906

Gene Structure 2563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAAATAGAGAACGGAGAACGGGATATCTGCACGGCGTCTCCGGCGGCGAAGGCTGCGGCGATCGGAGACGAGAATGAGAGGGGCGGAGAGGCGTTCGTGCCCCCTCTGAACTTCGCCATGGTCGACAATGGCGTGTTTAGGTCCGGCTTTCCTCATTCCCCCAATTTCAGCTTCTTGAAATCCCTAGGCCTCCGTTCCGTCATATATTTGTGCCCGGAGCCGTATCCGGAGGAGAACAAAGAGTTTTTGAGAGCAAATGGGATTCAGCTTTTCCAGTTTGGGATCGATGGCTCTCAGGAACCTTACGTGAAAATCCCGGAGGACACAATTCGTGAAGCATTAAAAGTTGTCCTTGATGTAAGAAACCACCCGCTCCTGATTCATTGCAAGCGAGGGAAGCACCGGACGGGCTGCCTTGTGGGATGCTTAAGAAGAATGCAAAGATGGTGCCTGACCTCAATCTTTGACGAGTACCAGAGGTTTGCAGCTGCAAAAGCTCGAGTTTCGGATCAGAGGTTCATCGAAGTCTTTGATATTTCTAGGTTCAACAACTGTCCAACGTCGTTTTCGTCTTCTAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1900424 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

196

Amino Acids

22.08

Weight (kDa)

8.7

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	34 - 183	3.1e-62	Tyrosine phosphatase family
Y_phosphatase3	PF13350	107 - 161	1.5e-06	Tyrosine phosphatase family
PTP-NADK	PF22741	108 - 151	2.3e-07	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03960
malus_domestica	MD05G1354200.v1.1
prunus_persica	Prupe.4G013600_v2.0.a1
pyrus_communis	pycom10g27820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	450
AccBSI	CCGCTC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	4 cut(s)	47, 59, 87, 374
AclWI	GGATC	2 cut(s)	293, 519
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	476
AflII	CTTAAG	1 cut(s)	430
AgsI	TTSAA	2 cut(s)	181, 550
AjuI	GAANNNNNNNTTGG	4 cut(s)	158, 190, 553, 585
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
AluBI	AGCT	4 cut(s)	174, 271, 491, 500
AluI	AGCT	4 cut(s)	174, 271, 491, 500
Alw26I	GTCTC	2 cut(s)	45, 63
AlwI	GGATC	2 cut(s)	293, 519
Ama87I	CYCGRG	1 cut(s)	501
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	4 cut(s)	56, 414, 488, 491
AspA2I	CCTAGG	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	144
AsuC2I	CCSGG	2 cut(s)	218, 320
AvaI	CYCGRG	1 cut(s)	501
AvaII	GGWCC	1 cut(s)	144
AvrII	CCTAGG	1 cut(s)	187
BaeGI	GKGCMC	2 cut(s)	105, 218
BanI	GGYRCC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	567
BbvI	GCAGC	4 cut(s)	43, 401, 478, 500
BccI	CCATC	2 cut(s)	284, 441
BceAI	ACGGC	2 cut(s)	51, 208
BciVI	GTATCC	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	218, 320
BcoDI	GTCTC	2 cut(s)	45, 63
BfaI	CTAG	2 cut(s)	188, 543
BfrI	CTTAAG	1 cut(s)	430
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	6 cut(s)	48, 57, 60, 415, 489, 492
BlnI	CCTAGG	1 cut(s)	187
BlsI	GCNGC	6 cut(s)	49, 58, 61, 416, 490, 493
Bme1390I	CCNGG	2 cut(s)	218, 320
Bme18I	GGWCC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	3 cut(s)	222, 303, 452
BmrFI	CCNGG	2 cut(s)	218, 320
BmsI	GCATC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	567
BpuMI	CCSGG	2 cut(s)	218, 320
Bsa29I	ATCGAT	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	120, 187
BsaWI	WCCGGW	2 cut(s)	229, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	385
BseAI	TCCGGA	1 cut(s)	229
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	120, 187
BseGI	GGATG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	2 cut(s)	105, 218
BseXI	GCAGC	4 cut(s)	43, 401, 478, 500
BsgI	GTGCAG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	450
BshVI	ATCGAT	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	6 cut(s)	44, 147, 218, 230, 320, 406
BsmAI	GTCTC	2 cut(s)	45, 63
BsmBI	CGTCTC	2 cut(s)	45, 63
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	1 cut(s)	192
BsoBI	CYCGRG	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	105, 218
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	63, 285, 511
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	4 cut(s)	47, 59, 87, 374
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	310
BspDI	ATCGAT	1 cut(s)	288
BspEI	TCCGGA	1 cut(s)	229
BspLI	GGNNCC	3 cut(s)	222, 303, 452
BspPI	GGATC	2 cut(s)	293, 519
BspT107I	GGYRCC	1 cut(s)	450
BspTI	CTTAAG	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	120, 187
BssMI	GATC	3 cut(s)	63, 285, 511
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	120, 187
Bst4CI	ACNGT	1 cut(s)	557
BstACI	GRCGYC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	430
BstBAI	YACGTR	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	2 cut(s)	297, 579
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	431
BstKTI	GATC	3 cut(s)	66, 288, 514
BstMAI	GTCTC	2 cut(s)	45, 63
BstMBI	GATC	3 cut(s)	63, 285, 511
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 53, 56, 400, 497
BstSCI	CCNGG	2 cut(s)	216, 318
BstSLI	GKGCMC	2 cut(s)	105, 218
BstV1I	GCAGC	4 cut(s)	43, 401, 478, 500
BstV2I	GAAGAC	1 cut(s)	567
Bsu15I	ATCGAT	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	192
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	288
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	1 cut(s)	121
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	2 cut(s)	297, 579
DpnI	GATC	3 cut(s)	65, 287, 513
DpnII	GATC	3 cut(s)	63, 285, 511
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	120, 187
Eco147I	AGGCCT	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	120, 187
ErhI	CCWWGG	2 cut(s)	120, 187
Esp3I	CGTCTC	2 cut(s)	45, 63
FaeI	CATG	1 cut(s)	124
FaiI	YATR	3 cut(s)	122, 206, 208
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	6 cut(s)	48, 57, 60, 415, 489, 492
FokI	GGATG	1 cut(s)	438
Fsp4HI	GCNGC	6 cut(s)	48, 57, 60, 415, 489, 492
FspBI	CTAG	2 cut(s)	188, 543
GluI	GCNGC	6 cut(s)	48, 57, 60, 415, 489, 492
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	6 cut(s)	44, 147, 218, 230, 320, 406
HgaI	GACGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	265, 382
HpaII	CCGG	6 cut(s)	44, 147, 218, 230, 320, 406
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	4 cut(s)	68, 111, 511, 516
Hpy188III	TCNNGA	5 cut(s)	178, 230, 299, 335, 379
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	568
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	2 cut(s)	309, 563
HpyCH4V	TGCA	5 cut(s)	33, 390, 442, 488, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 53, 56, 400, 497
HpyF3I	CTNAG	2 cut(s)	297, 579
HpySE526I	ACGT	2 cut(s)	309, 563
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	124
Kpn2I	TCCGGA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	63, 285, 511
LmnI	GCTCC	2 cut(s)	220, 381
Lsp1109I	GCAGC	4 cut(s)	43, 401, 478, 500
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	2 cut(s)	188, 543
MaeII	ACGT	2 cut(s)	309, 563
MalI	GATC	3 cut(s)	65, 287, 513
MbiI	CCGCTC	1 cut(s)	376
MboI	GATC	3 cut(s)	63, 285, 511
MboII	GAAGA	2 cut(s)	447, 567
MhlI	GDGCHC	2 cut(s)	105, 218
MluCI	AATT	2 cut(s)	166, 330
MmeI	TCCRAC	1 cut(s)	584
MroI	TCCGGA	1 cut(s)	229
MseI	TTAA	2 cut(s)	344, 431
MspA1I	CMGCKG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	430
MspI	CCGG	6 cut(s)	44, 147, 218, 230, 320, 406
MspR9I	CCNGG	2 cut(s)	218, 320
Mva1269I	GAATGC	1 cut(s)	444
MwoI	GCNNNNNNNGC	5 cut(s)	44, 53, 56, 400, 497
NciI	CCSGG	2 cut(s)	218, 320
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	3 cut(s)	63, 285, 511
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	3 cut(s)	222, 303, 452
PaeR7I	CTCGAG	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 132, 569
PctI	GAATGC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	265, 382
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	6 cut(s)	49, 58, 61, 416, 490, 493
Ple19I	CGATCG	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	222, 303, 452
PspPI	GGNCC	1 cut(s)	144
PspXI	VCTCGAGB	1 cut(s)	501
PvuI	CGATCG	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	344, 431
SatI	GCNGC	6 cut(s)	48, 57, 60, 415, 489, 492
Sau3AI	GATC	3 cut(s)	63, 285, 511
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	2 cut(s)	218, 320
SduI	GDGCHC	2 cut(s)	105, 218
SfaNI	GCATC	1 cut(s)	416
Sfr274I	CTCGAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	144
SlaI	CTCGAG	1 cut(s)	501
SmlI	CTYRAG	2 cut(s)	430, 501
SmoI	CTYRAG	2 cut(s)	430, 501
Sse9I	AATT	2 cut(s)	166, 330
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	4 cut(s)	47, 59, 87, 374
SspMI	CTAG	2 cut(s)	188, 543
StuI	AGGCCT	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	216, 318
StyI	CCWWGG	2 cut(s)	120, 187
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	2 cut(s)	312, 566
TaqI	TCGA	4 cut(s)	126, 288, 502, 525
TasI	AATT	2 cut(s)	166, 330
TauI	GCSGC	2 cut(s)	50, 62
TfiI	GAWTC	2 cut(s)	265, 382
Tru1I	TTAA	2 cut(s)	344, 431
Tru9I	TTAA	2 cut(s)	344, 431
TseI	GCWGC	4 cut(s)	56, 414, 488, 491
TspDTI	ATGAA	3 cut(s)	17, 374, 511
TspGWI	ACGGA	3 cut(s)	30, 185, 190
Vha464I	CTTAAG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	144
XhoI	CTCGAG	1 cut(s)	501
XmaJI	CCTAGG	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	2 cut(s)	188, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.