Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0024673

Physical Location & Seq

Genomic Coordinates Forward (+)

28950587 .. 28951123

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28310.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCATGTGCATCCTCTCCTTCTGATGATTCCGGGTGGCATTGGGGCACAATTGGCTTTCTTGTTTCCTACGGCAACTCCTTCAAATACCATAGGATTCGCCACTGGCCACATTGAGATCCAAGATATGATCAAGAGTGGCTTGCCATTGAAGATTGTTGGGATTGCTGTGTTGTCCCTTTTGATGCTCACTCTTGATAACATTCCTTTTCTCTTCATTATTTATGCAGGAGCTTATGTATTTAGGATTGAAAGTTCAATAATAACATGTTTCGTTAGCGATAGTCTTATGATCCCAATCAACTATGAGATTTTAAATTTGCATTTCATATATGATGTCCGTGATGATCAACCTTATAAATATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

123

Amino Acids

13.59

Weight (kDa)

5.3

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024673)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g28310
rosa_laevigata	RLG00000025413
rosa_multiflora	Rmu_sc0003900.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
AclWI	GGATC	2 cut(s)	112, 286
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	4 cut(s)	84, 151, 251, 258
AloI	GAACNNNNNNTCC	2 cut(s)	238, 270
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
AlwI	GGATC	2 cut(s)	112, 286
AoxI	GGCC	1 cut(s)	106
ApoI	RAATTY	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	87
BclI	TGATCA	2 cut(s)	129, 346
BcnI	CCSGG	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	19, 174
BpuMI	CCSGG	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	296
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 222, 252
Bse1I	ACTGG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	296
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	117, 129, 291, 346
BspANI	GGCC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	112, 286
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	117, 129, 291, 346
Bst6I	CTCTTC	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	120, 132, 294, 349
BstMBI	GATC	4 cut(s)	117, 129, 291, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	2 cut(s)	8, 270
BstSCI	CCNGG	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	143
CviAII	CATG	2 cut(s)	5, 267
CviJI	RGCY	4 cut(s)	56, 108, 141, 233
CviKI_1	RGCY	4 cut(s)	56, 108, 141, 233
DpnI	GATC	4 cut(s)	119, 131, 293, 348
DpnII	GATC	4 cut(s)	117, 129, 291, 346
DraI	TTTAAA	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 270
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	4, 266
FbaI	TGATCA	2 cut(s)	129, 346
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	2 cut(s)	8, 270
HinfI	GANTC	2 cut(s)	28, 96
HpaII	CCGG	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	2 cut(s)	133, 194
HpyAV	CCTTC	2 cut(s)	29, 90
HpyCH4V	TGCA	4 cut(s)	4, 10, 227, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	8, 270
Ksp22I	TGATCA	2 cut(s)	129, 346
Kzo9I	GATC	4 cut(s)	117, 129, 291, 346
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	3 cut(s)	45, 90, 213
LweI	GCATC	2 cut(s)	19, 174
MalI	GATC	4 cut(s)	119, 131, 293, 348
MboI	GATC	4 cut(s)	117, 129, 291, 346
MboII	GAAGA	2 cut(s)	163, 205
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	2 cut(s)	50, 316
MluNI	TGGCCA	1 cut(s)	108
MnlI	CCTC	1 cut(s)	24
Mox20I	TGGCCA	1 cut(s)	108
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	108
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	117, 129, 291, 346
NlaIII	CATG	2 cut(s)	8, 270
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 270
PciI	ACATGT	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	28, 96
PscI	ACATGT	1 cut(s)	266
PsiI	TTATAA	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	314
Sau3AI	GATC	4 cut(s)	117, 129, 291, 346
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	2 cut(s)	235, 355
SfaNI	GCATC	2 cut(s)	19, 174
Sse9I	AATT	2 cut(s)	50, 316
StyD4I	CCNGG	1 cut(s)	31
TasI	AATT	2 cut(s)	50, 316
TfiI	GAWTC	2 cut(s)	28, 96
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	205, 316
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	2 cut(s)	8, 270
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.