Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003900.1

Orthogroup ID

OG0024673

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 326

Gene Structure 326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003900.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 232 bp

gaatgtgcatccgctgcttcttatgattccaggagctgtcggggcccaatttgctttcttgcttccgactggaaccccttcgaatacagttgggttcatcactggccacattgaaatcaaagatatgatcaaggttggcttgccattaaagattgccggaactgcggtgctgacacttttgatgcctacacttggaacttatgtatttgggacaaatgaaccagttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

76

Amino Acids

7.96

Weight (kDa)

6.92

Isoelectric Point (pI)

19.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024673)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g28310
rosa_laevigata	RLG00000025413
rosa_multiflora	Rmu_sc0003900.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	12, 165
AcoI	YGGCCR	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	114, 228
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	43, 104
ApaI	GGGCCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	14
Asp700I	GAANNNNTTC	2 cut(s)	77, 223
AspS9I	GGNCC	2 cut(s)	43, 44
AsuII	TTCGAA	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	31
BclI	TGATCA	1 cut(s)	127
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	43, 44
BmiI	GGNNCC	3 cut(s)	44, 45, 74
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	17, 172
Bpu14I	TTCGAA	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	3 cut(s)	74, 107, 222
BseBI	CCWGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseNI	ACTGG	3 cut(s)	74, 107, 222
BseSI	GKGCMC	1 cut(s)	47
BshFI	GGCC	2 cut(s)	45, 106
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	45, 106
Bsp119I	TTCGAA	1 cut(s)	81
Bsp120I	GGGCCC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	2 cut(s)	12, 165
BspANI	GGCC	2 cut(s)	45, 106
BspLI	GGNNCC	3 cut(s)	44, 45, 74
BspT104I	TTCGAA	1 cut(s)	81
BsrI	ACTGG	3 cut(s)	74, 107, 222
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 42, 51, 162
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	45, 106
BtsCI	GGATG	1 cut(s)	8
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	43, 44
CviJI	RGCY	4 cut(s)	36, 45, 106, 139
CviKI_1	RGCY	4 cut(s)	36, 45, 106, 139
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	47
FaiI	YATR	3 cut(s)	24, 126, 202
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	1 cut(s)	224
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	15
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	45, 106
HapII	CCGG	1 cut(s)	157
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 42, 51, 162
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	5 cut(s)	16, 43, 55, 88, 170
LweI	GCATC	2 cut(s)	17, 172
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	47
MlsI	TGGCCA	1 cut(s)	106
MluCI	AATT	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	90
Mox20I	TGGCCA	1 cut(s)	106
MroXI	GAANNNNTTC	2 cut(s)	77, 223
MscI	TGGCCA	1 cut(s)	106
MseI	TTAA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	106
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	4 cut(s)	14, 42, 51, 162
NdeII	GATC	1 cut(s)	127
NlaIV	GGNNCC	3 cut(s)	44, 45, 74
NspV	TTCGAA	1 cut(s)	81
PdmI	GAANNNNTTC	2 cut(s)	77, 223
PfeI	GAWTC	1 cut(s)	26
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	3 cut(s)	44, 45, 74
PspOMI	GGGCCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	43, 44
PstNI	CAGNNNCTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	2 cut(s)	43, 44
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	2 cut(s)	38, 136
SfaNI	GCATC	2 cut(s)	17, 172
SfuI	TTCGAA	1 cut(s)	81
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	2 cut(s)	12, 165
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	86, 232
TspRI	CASTG	1 cut(s)	107
XmnI	GAANNNNTTC	2 cut(s)	77, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.