Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0024673

Physical Location & Seq

Genomic Coordinates Reverse (-)

45641093 .. 45641538

Gene Structure 446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025413

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAATGTGCATCCCCTGCTTCTTGTGATTCCAGGAGCTGTTGGGGCTCAATTTGCTTTCTTGCTTCCGACTGGAACCCCTTCAAATATAGTTGGGTTCACCACTGGCCACATTGAAATCAAAGATATGATCAAGGTTGGCTTGCCATTAAAGATTGCCGGAACTGCGGAACTTACGTATTTGGGACAAACGAACCAGTTCAATGATGCTATGTTGGGTCTTGGTACAGAGGAGCTAATGTCTATAGCTACGAGTATACAGATACTGAAGGAAAGGAAAGGAGGGGCAACAGCTTACTTTGCTTCTCCCATATTCTCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006873 GO:0006885 GO:0008150 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071423 GO:0071702 GO:0098656 GO:0098771 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

108

Amino Acids

11.3

Weight (kDa)

6.03

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024673)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g28310
rosa_laevigata	RLG00000025413
rosa_multiflora	Rmu_sc0003900.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	256
AciI	CCGC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	84, 116, 202
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	4 cut(s)	38, 235, 248, 293
AluI	AGCT	4 cut(s)	38, 235, 248, 293
AlwNI	CAGNNNCTG	2 cut(s)	38, 265
AoxI	GGCC	1 cut(s)	106
Asp700I	GAANNNNTTC	2 cut(s)	79, 197
AsuHPI	GGTGA	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	19, 196
BsaAI	YACGTR	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bse1I	ACTGG	3 cut(s)	76, 109, 196
BseBI	CCWGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	10
BseNI	ACTGG	3 cut(s)	76, 109, 196
BseRI	GAGGAG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	76, 109, 196
BssMI	GATC	1 cut(s)	129
BssNAI	GTATAC	1 cut(s)	257
Bst1107I	GTATAC	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstBAI	YACGTR	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 44, 53, 164, 299
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	243
BstSNI	TACGTA	1 cut(s)	177
BstZ17I	GTATAC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	2 cut(s)	38, 265
Csp6I	GTAC	1 cut(s)	225
CviJI	RGCY	7 cut(s)	38, 47, 108, 141, 235, 248, 293
CviKI_1	RGCY	7 cut(s)	38, 47, 108, 141, 235, 248, 293
CviQI	GTAC	1 cut(s)	225
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	106
Eco105I	TACGTA	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	49
FaiI	YATR	6 cut(s)	89, 128, 212, 245, 257, 311
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	256
FriOI	GRGCYC	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	159
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	99, 257
Hpy188I	TCNGA	1 cut(s)	69
Hpy8I	GTNNAC	2 cut(s)	99, 257
HpyAV	CCTTC	2 cut(s)	90, 262
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 44, 53, 164, 299
HpySE526I	ACGT	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	2 cut(s)	35, 232
LpnPI	CCDG	7 cut(s)	18, 29, 45, 57, 90, 172, 209
LweI	GCATC	2 cut(s)	19, 196
MaeII	ACGT	1 cut(s)	176
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	1 cut(s)	50
MluNI	TGGCCA	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	2 cut(s)	223, 275
Mox20I	TGGCCA	1 cut(s)	108
MroXI	GAANNNNTTC	2 cut(s)	79, 197
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	108
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	5 cut(s)	16, 44, 53, 164, 299
NdeII	GATC	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	76
PdmI	GAANNNNTTC	2 cut(s)	79, 197
PfeI	GAWTC	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	76
PstNI	CAGNNNCTG	2 cut(s)	38, 265
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	6 cut(s)	40, 138, 179, 237, 250, 295
SfaNI	GCATC	2 cut(s)	19, 196
SfcI	CTRYAG	1 cut(s)	243
SnaBI	TACGTA	1 cut(s)	177
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	31
TaiI	ACGT	1 cut(s)	179
TasI	AATT	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	256
XmnI	GAANNNNTTC	2 cut(s)	79, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.