pycom111g00870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0019324
Physical Location & Seq
Reverse (-)
583906 .. 584148
243 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g00870.1

Sequence Viewer

Length: 243 bp
ATGCTTGTGCCGGTGTGTCTCTCGTCACACCGTAAGACTCTCTCCATGCGTGGATTCCATGGAGAACTGGAGGAGGCTCAAGTGCTGAAGTACTTGTTAAACTACGGTGAGGTTTTGAATAAGATTACTATTTCTACAAGGAATTTCGTAGGTAATCCCGTGTGTCTTACAATAGAGGACTTGTGTAAGAAAATTTTGTTGTCTCAAAAGGGTTCAGAGACCTGCCAAGTTGAAGTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

81

Amino Acids

8.98

Weight (kDa)

7.67

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 3 - 44 6.1e-09 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019324)

Species Orthologous Gene IDs
pyrus_communis pycom111g00870
rosa_chinensis RchiOBHm_Chr4g0416371
rosa_multiflora Rmu_sc0001488.1_g000007
rosa_rugosa Rorug04G0141400
rosa_samantha Rh4BG201000 Rh4CG215000 Rh4DG200900
rosa_wichuraiana Rw4G017230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 230
AcsI RAATTY 2 cut(s) 142, 192
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 2 cut(s) 118, 233
Alw26I GTCTC 3 cut(s) 23, 207, 212
ApoI RAATTY 2 cut(s) 142, 192
AsuHPI GGTGA 1 cut(s) 119
BcoDI GTCTC 3 cut(s) 23, 207, 212
BfaI CTAG 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 230
BmcAI AGTACT 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 11
BsmAI GTCTC 3 cut(s) 23, 207, 212
Bso31I GGTCTC 1 cut(s) 212
Bsp19I CCATGG 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 32, 107
BstDSI CCRYGG 1 cut(s) 58
BstMAI GTCTC 3 cut(s) 23, 207, 212
BtgI CCRYGG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 10
Csp6I GTAC 1 cut(s) 91
CviAII CATG 2 cut(s) 46, 59
CviJI RGCY 1 cut(s) 77
CviKI_1 RGCY 1 cut(s) 77
CviQI GTAC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 2 cut(s) 49, 62
FaiI YATR 2 cut(s) 47, 60
FatI CATG 2 cut(s) 45, 58
FspBI CTAG 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 89
HapII CCGG 1 cut(s) 11
Hin1II CATG 2 cut(s) 49, 62
HinfI GANTC 2 cut(s) 37, 54
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 32, 107
Hsp92II CATG 2 cut(s) 49, 62
LpnPI CCDG 3 cut(s) 24, 53, 235
MaeI CTAG 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 24
MluCI AATT 2 cut(s) 142, 192
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 4 cut(s) 64, 67, 103, 169
MseI TTAA 1 cut(s) 98
MspI CCGG 1 cut(s) 11
NcoI CCATGG 1 cut(s) 58
NlaIII CATG 2 cut(s) 49, 62
NmuCI GTSAC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 54
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 98
ScaI AGTACT 1 cut(s) 92
SchI GAGTC 1 cut(s) 31
SetI ASST 3 cut(s) 114, 154, 224
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 2 cut(s) 142, 192
SspMI CTAG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 32, 107
TasI AATT 2 cut(s) 142, 192
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseFI GTSAC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 24
XapI RAATTY 2 cut(s) 142, 192
XspI CTAG 1 cut(s) 241
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.