Rh4BG201000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0019324
Physical Location & Seq
Forward (+)
34483841 .. 34490157
6317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG201000.1

Sequence Viewer

Length: 363 bp
ATGTCAAAGGAATATGTAACCAAGTTTCTCAATAAGTCACCAAACCTAGAATATCTTGTCTTGGAGCTCGACAACAAATATCTACAAGAAGGGCAGTCTTTCACACCACCGGAGTTTGTGCCTGTTTGCTTGTCGTCGCACCTCAAGAAAATGTACATGAGGGGATTCAGTGGGCGGTGGGGGGAGTTGGAAGTGTTAAATTACTTGCTGCGGTACGGTGAAGTTTTGAATGAGTTGGCCATCTCTAGTCATCCAACTCTTGGCCATAGAAAAGAAGAATCATTGTACAAGGAAATATTACAATTTCCCCGGGCTTCGAGGACTTGTGAAGTTAAATTTTTGTCCAGCTTACTTTCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

120

Amino Acids

13.95

Weight (kDa)

7.76

Isoelectric Point (pI)

63.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 37 - 81 3.6e-10 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019324)

Species Orthologous Gene IDs
pyrus_communis pycom111g00870
rosa_chinensis RchiOBHm_Chr4g0416371
rosa_multiflora Rmu_sc0001488.1_g000007
rosa_rugosa Rorug04G0141400
rosa_samantha Rh4BG201000 Rh4CG215000 Rh4DG200900
rosa_wichuraiana Rw4G017230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 260
AciI CCGC 2 cut(s) 175, 211
AcoI YGGCCR 2 cut(s) 237, 262
AcsI RAATTY 1 cut(s) 335
AfaI GTAC 3 cut(s) 155, 215, 287
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 3 cut(s) 67, 348, 360
AluI AGCT 3 cut(s) 67, 348, 360
Alw21I GWGCWC 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 2 cut(s) 237, 262
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 335
AsuC2I CCSGG 2 cut(s) 310, 311
AsuHPI GGTGA 2 cut(s) 30, 230
AvaI CYCGRG 1 cut(s) 309
BalI TGGCCA 2 cut(s) 239, 264
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 195
BccI CCATC 1 cut(s) 248
BcnI CCSGG 2 cut(s) 310, 311
BfaI CTAG 4 cut(s) 47, 246, 357, 361
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 2 cut(s) 310, 311
BmeT110I CYCGRG 1 cut(s) 309
BmrFI CCNGG 2 cut(s) 310, 311
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 2 cut(s) 310, 311
BsaJI CCNNGG 2 cut(s) 308, 309
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 308, 309
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 195
BshFI GGCC 2 cut(s) 239, 264
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 2 cut(s) 110, 310
BslI CCNNNNNNNGG 1 cut(s) 260
BsnI GGCC 2 cut(s) 239, 264
BsoBI CYCGRG 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1407I TGTACA 2 cut(s) 153, 285
BspACI CCGC 2 cut(s) 175, 211
BspANI GGCC 2 cut(s) 239, 264
BsrGI TGTACA 2 cut(s) 153, 285
BssECI CCNNGG 2 cut(s) 308, 309
Bst4CI ACNGT 1 cut(s) 218
BstAUI TGTACA 2 cut(s) 153, 285
BstF5I GGATG 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 308, 309
BstV1I GCAGC 1 cut(s) 195
BsuRI GGCC 2 cut(s) 239, 264
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 175
Cfr9I CCCGGG 1 cut(s) 309
Csp6I GTAC 3 cut(s) 154, 214, 286
CviAII CATG 1 cut(s) 157
CviJI RGCY 6 cut(s) 67, 239, 264, 314, 348, 360
CviKI_1 RGCY 6 cut(s) 67, 239, 264, 314, 348, 360
CviQI GTAC 3 cut(s) 154, 214, 286
EaeI YGGCCR 2 cut(s) 237, 262
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 1 cut(s) 160
FaiI YATR 3 cut(s) 15, 158, 267
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 1 cut(s) 237
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 4 cut(s) 47, 246, 357, 361
GluI GCNGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 239, 264
HapII CCGG 2 cut(s) 110, 310
Hin1II CATG 1 cut(s) 160
HinfI GANTC 2 cut(s) 165, 278
HpaII CCGG 2 cut(s) 110, 310
HphI GGTGA 2 cut(s) 30, 230
Hpy188III TCNNGA 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 218
Hsp92II CATG 1 cut(s) 160
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 123, 135, 323, 358
Lsp1109I GCAGC 1 cut(s) 195
MaeI CTAG 4 cut(s) 47, 246, 357, 361
MaeIII GTNAC 2 cut(s) 16, 36
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 2 cut(s) 239, 264
MluCI AATT 3 cut(s) 199, 302, 335
MluNI TGGCCA 2 cut(s) 239, 264
MmeI TCCRAC 2 cut(s) 168, 278
MnlI CCTC 3 cut(s) 152, 153, 312
Mox20I TGGCCA 2 cut(s) 239, 264
MscI TGGCCA 2 cut(s) 239, 264
MseI TTAA 2 cut(s) 197, 333
Msp20I TGGCCA 2 cut(s) 239, 264
MspI CCGG 2 cut(s) 110, 310
MspR9I CCNGG 2 cut(s) 310, 311
NciI CCSGG 2 cut(s) 310, 311
NlaIII CATG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 165, 278
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 69
RsaI GTAC 3 cut(s) 155, 215, 287
RsaNI GTAC 3 cut(s) 154, 214, 286
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 197, 333
SatI GCNGC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 310, 311
SduI GDGCHC 1 cut(s) 69
SetI ASST 5 cut(s) 48, 69, 144, 350, 362
SmaI CCCGGG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 3 cut(s) 199, 302, 335
SsiI CCGC 2 cut(s) 175, 211
SspI AATATT 1 cut(s) 297
SspMI CTAG 4 cut(s) 47, 246, 357, 361
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 308, 309
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 2 cut(s) 69, 317
TasI AATT 3 cut(s) 199, 302, 335
TatI WGTACW 2 cut(s) 153, 285
TfiI GAWTC 2 cut(s) 165, 278
Tru1I TTAA 2 cut(s) 197, 333
Tru9I TTAA 2 cut(s) 197, 333
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 36
TspMI CCCGGG 1 cut(s) 309
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 260
XapI RAATTY 1 cut(s) 335
XmaI CCCGGG 1 cut(s) 309
XspI CTAG 4 cut(s) 47, 246, 357, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.