pycom111g02260

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0024435
Physical Location & Seq
Reverse (-)
1355573 .. 1356845
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g02260.2

Sequence Viewer

Length: 732 bp
ATGGGTACCAGCAACTCCGCCCATCGAGCCGGCGTTCAAAGGGCTGCAATGGGTATTAACAACTTTGCCCATCGAGCCGCTGCCTCCTCTTCGTCTCCCTCGAGACGCTCAAACAGCTGGAAGTACGAGGTGTTCCTGAGCTTTAGAGGCGACGACACACGCAATACCTTCACAGACCACCTCTCCATTGCGTTACGCAATGCCGGAATCAACACGTTTATAGACTACCAGCTCAGAATGGGAAAAAATATACAGAGTGAACTTTACCGAGAAATCGAAGAGTCGAGGATCGACGTCGTCATCTTCTCGAAGAGGTACGCGGAGTCCCGATGGTGCCTGAGGGAGCTGTCGAAGATCATGAGGTGCCGAGAAGTTCAAAAGGGGAAAATAGTCTATCCAATATTCTACAACGTTGACCCTTCTCAAGTCAGGAAACAGAATGGTAGTTTTTCGAAAGCATTTCAGAAGCACAAAAGGAATGAAGATCCAAATGAAGTCAAGCAGTGGAGAAAGGATCTTAAGGCTTCTGCAGATTTGAGTGGCCGGAATCTCAAAACCACTGCAGACGGACGTGAAGGATTGTTTATCGAGAAAATTATTGGAGACATCAAGGGACTACTGAAAATTACAAACTCAAAAGAAGCCAAGCGCTCAATTGGAATAGCTTTTCAAGTGCAAGACTTCAATACTCAACACTTAGATGTTGGAGTTAGATGTTGGAGGTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

244

Amino Acids

27.93

Weight (kDa)

10.03

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024435)

Species Orthologous Gene IDs
malus_domestica MD17G1023900.v1.1 MD17G1024100.v1.1
pyrus_communis pycom111g02260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 297
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 3 cut(s) 5, 333, 363
AccII CGCG 1 cut(s) 320
AciI CCGC 3 cut(s) 18, 78, 320
AclI AACGTT 1 cut(s) 411
AclWI GGATC 3 cut(s) 296, 479, 522
AcoI YGGCCR 1 cut(s) 541
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 3 cut(s) 7, 125, 317
AfeI AGCGCT 1 cut(s) 650
AflII CTTAAG 1 cut(s) 518
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 4 cut(s) 38, 377, 671, 685
AjiI CACGTC 1 cut(s) 572
AluBI AGCT 5 cut(s) 117, 141, 232, 346, 665
AluI AGCT 5 cut(s) 117, 141, 232, 346, 665
Alw26I GTCTC 3 cut(s) 97, 99, 597
AlwI GGATC 3 cut(s) 296, 479, 522
Ama87I CYCGRG 1 cut(s) 100
Aor51HI AGCGCT 1 cut(s) 650
AoxI GGCC 1 cut(s) 541
ApeKI GCWGC 2 cut(s) 44, 80
Asp718I GGTACC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 651
AsuII TTCGAA 1 cut(s) 452
AvaI CYCGRG 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 338
BanI GGYRCC 3 cut(s) 5, 333, 363
BbvI GCAGC 2 cut(s) 31, 67
BccI CCATC 3 cut(s) 30, 78, 324
BcoDI GTCTC 3 cut(s) 97, 99, 597
BfmI CTRYAG 2 cut(s) 528, 561
BfoI RGCGCY 1 cut(s) 652
BfrI CTTAAG 1 cut(s) 518
BisI GCNGC 3 cut(s) 45, 78, 81
BlsI GCNGC 3 cut(s) 46, 79, 82
BmeT110I CYCGRG 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 572
BmiI GGNNCC 3 cut(s) 7, 335, 365
Bpu10I CCTNAGC 1 cut(s) 137
Bpu14I TTCGAA 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bse118I RCCGGY 1 cut(s) 29
Bse21I CCTNAGG 1 cut(s) 338
Bse3DI GCAATG 3 cut(s) 54, 186, 205
BseMI GCAATG 3 cut(s) 54, 186, 205
BseMII CTCAG 3 cut(s) 128, 247, 329
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 2 cut(s) 31, 67
Bsh1236I CGCG 1 cut(s) 320
BshFI GGCC 1 cut(s) 543
BshNI GGYRCC 3 cut(s) 5, 333, 363
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 3 cut(s) 30, 204, 544
BslFI GGGAC 2 cut(s) 310, 627
BsmAI GTCTC 3 cut(s) 97, 99, 597
BsmBI CGTCTC 2 cut(s) 97, 99
BsmFI GGGAC 2 cut(s) 310, 627
BsnI GGCC 1 cut(s) 543
BsoBI CYCGRG 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 452
Bsp143I GATC 4 cut(s) 288, 354, 484, 514
BspACI CCGC 3 cut(s) 18, 78, 320
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 3 cut(s) 129, 246, 330
BspFNI CGCG 1 cut(s) 320
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 3 cut(s) 7, 335, 365
BspMAI CTGCAG 2 cut(s) 532, 565
BspPI GGATC 3 cut(s) 296, 479, 522
BspT104I TTCGAA 1 cut(s) 452
BspT107I GGYRCC 3 cut(s) 5, 333, 363
BspTI CTTAAG 1 cut(s) 518
BsrDI GCAATG 3 cut(s) 54, 186, 205
BsrFI RCCGGY 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 29
BssMI GATC 4 cut(s) 288, 354, 484, 514
BssNI GRCGYC 1 cut(s) 294
Bst6I CTCTTC 3 cut(s) 94, 273, 305
BstACI GRCGYC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 4 cut(s) 137, 233, 338, 697
BstFNI CGCG 1 cut(s) 320
BstH2I RGCGCY 1 cut(s) 652
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 4 cut(s) 291, 357, 487, 517
BstMAI GTCTC 3 cut(s) 97, 99, 597
BstMBI GATC 4 cut(s) 288, 354, 484, 514
BstMWI GCNNNNNNNGC 4 cut(s) 26, 74, 114, 147
BstSFI CTRYAG 2 cut(s) 528, 561
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 31, 67
BstX2I RGATCY 2 cut(s) 484, 514
BstYI RGATCY 2 cut(s) 484, 514
Bsu36I CCTNAGG 1 cut(s) 338
BsuRI GGCC 1 cut(s) 543
BtrI CACGTC 1 cut(s) 572
BtsI GCAGTG 2 cut(s) 509, 558
BtsIMutI CAGTG 2 cut(s) 509, 558
Cac8I GCNNGC 1 cut(s) 31
CciI TCATGA 1 cut(s) 357
CfoI GCGC 1 cut(s) 651
Cfr10I RCCGGY 1 cut(s) 29
CseI GACGC 1 cut(s) 114
Csp6I GTAC 3 cut(s) 6, 124, 316
CviAII CATG 1 cut(s) 358
CviQI GTAC 3 cut(s) 6, 124, 316
DdeI CTNAG 4 cut(s) 137, 233, 338, 697
DpnI GATC 4 cut(s) 290, 356, 486, 516
DpnII GATC 4 cut(s) 288, 354, 484, 514
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 3 cut(s) 94, 273, 305
EarI CTCTTC 3 cut(s) 94, 273, 305
EciI GGCGGA 1 cut(s) 7
Eco47III AGCGCT 1 cut(s) 650
Eco81I CCTNAGG 1 cut(s) 338
Eco88I CYCGRG 1 cut(s) 100
Esp3I CGTCTC 2 cut(s) 97, 99
FaeI CATG 1 cut(s) 361
FaiI YATR 3 cut(s) 221, 251, 359
FaqI GGGAC 2 cut(s) 310, 627
FatI CATG 1 cut(s) 357
Fnu4HI GCNGC 3 cut(s) 45, 78, 81
Fsp4HI GCNGC 3 cut(s) 45, 78, 81
GlaI GCGC 1 cut(s) 650
GluI GCNGC 3 cut(s) 45, 78, 81
HaeII RGCGCY 1 cut(s) 652
HaeIII GGCC 1 cut(s) 543
HapII CCGG 3 cut(s) 30, 204, 544
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 651
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 4 cut(s) 207, 281, 323, 547
HpaII CCGG 3 cut(s) 30, 204, 544
Hpy166II GTNNAC 3 cut(s) 260, 415, 726
Hpy188I TCNGA 2 cut(s) 236, 465
Hpy188III TCNNGA 7 cut(s) 102, 136, 307, 327, 358, 430, 589
Hpy8I GTNNAC 3 cut(s) 260, 415, 726
Hpy99I CGWCG 3 cut(s) 155, 296, 299
HpyAV CCTTC 3 cut(s) 178, 429, 569
HpyCH4IV ACGT 4 cut(s) 215, 294, 411, 571
HpyCH4V TGCA 4 cut(s) 47, 530, 563, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 74, 114, 147
HpyF3I CTNAG 4 cut(s) 137, 233, 338, 697
HpySE526I ACGT 4 cut(s) 215, 294, 411, 571
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 1 cut(s) 649
KpnI GGTACC 1 cut(s) 9
KroI GCCGGC 1 cut(s) 29
KroNI GCCGGC 1 cut(s) 31
Kzo9I GATC 4 cut(s) 288, 354, 484, 514
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 9 cut(s) 22, 43, 103, 149, 217, 242, 350, 415, 557
Lsp1109I GCAGC 2 cut(s) 31, 67
MaeII ACGT 4 cut(s) 215, 294, 411, 571
MaeIII GTNAC 1 cut(s) 192
MalI GATC 4 cut(s) 290, 356, 486, 516
MboI GATC 4 cut(s) 288, 354, 484, 514
MboII GAAGA 6 cut(s) 81, 290, 295, 322, 364, 494
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 2 cut(s) 484, 514
MluCI AATT 3 cut(s) 594, 624, 654
MlyI GAGTC 2 cut(s) 290, 332
MmeI TCCRAC 2 cut(s) 685, 698
MroNI GCCGGC 1 cut(s) 29
MseI TTAA 3 cut(s) 57, 519, 730
MslI CAYNNNNRTG 1 cut(s) 699
MspA1I CMGCKG 2 cut(s) 80, 117
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 3 cut(s) 30, 204, 544
MunI CAATTG 1 cut(s) 654
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 4 cut(s) 26, 74, 114, 147
NaeI GCCGGC 1 cut(s) 31
NdeII GATC 4 cut(s) 288, 354, 484, 514
NgoMIV GCCGGC 1 cut(s) 29
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 3 cut(s) 7, 335, 365
NmeAIII GCCGAG 1 cut(s) 392
NspV TTCGAA 1 cut(s) 452
PaeR7I CTCGAG 1 cut(s) 100
PagI TCATGA 1 cut(s) 357
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PdiI GCCGGC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 207, 547
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 3 cut(s) 46, 79, 82
PleI GAGTC 2 cut(s) 289, 331
PpsI GAGTC 2 cut(s) 289, 331
Psp1406I AACGTT 1 cut(s) 411
PspN4I GGNNCC 3 cut(s) 7, 335, 365
PsrI GAACNNNNNNTAC 2 cut(s) 116, 148
PstI CTGCAG 2 cut(s) 532, 565
PsuI RGATCY 2 cut(s) 484, 514
PsyI GACNNNGTC 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 117
RsaI GTAC 3 cut(s) 7, 125, 317
RsaNI GTAC 3 cut(s) 6, 124, 316
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 3 cut(s) 57, 519, 730
SatI GCNGC 3 cut(s) 45, 78, 81
Sau3AI GATC 4 cut(s) 288, 354, 484, 514
SchI GAGTC 2 cut(s) 290, 332
SfcI CTRYAG 2 cut(s) 528, 561
Sfr274I CTCGAG 1 cut(s) 100
SfuI TTCGAA 1 cut(s) 452
SlaI CTCGAG 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 3 cut(s) 100, 423, 518
SmoI CTYRAG 3 cut(s) 100, 423, 518
Sse9I AATT 3 cut(s) 594, 624, 654
SsiI CCGC 3 cut(s) 18, 78, 320
SspI AATATT 1 cut(s) 402
TaiI ACGT 4 cut(s) 218, 297, 414, 574
TasI AATT 3 cut(s) 594, 624, 654
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 2 cut(s) 207, 547
Tru1I TTAA 3 cut(s) 57, 519, 730
Tru9I TTAA 3 cut(s) 57, 519, 730
TscAI CASTG 2 cut(s) 509, 565
TseI GCWGC 2 cut(s) 44, 80
TspDTI ATGAA 2 cut(s) 495, 507
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 2 cut(s) 509, 565
Tth111I GACNNNGTC 1 cut(s) 296
Vha464I CTTAAG 1 cut(s) 518
XhoI CTCGAG 1 cut(s) 100
ZraI GACGTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.