Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0024675

Physical Location & Seq

Genomic Coordinates Forward (+)

1522181 .. 1522546

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCCGGAAGGGCGGAGGAGGAGGGGAGGGATCCAGTTTAGCAAGCTGTACTCGTTTTCGTGTTTTCGCTCTCCTCTCCCTGAAAGTCATCCCCAAATCGGGGAAAGAGGGTACTCGAGGGTGGTGCATTGCAATGATCCGGATCATCCGGAGGCGCTTGAGTTGAGATACAGGGGAAATTATGTTTCGACTACCAAGTACACGGCGGCGAACTTCATTCCAAAGTCTTTGTTTGAGCAGTTTAGGAGGGTTGCAAATATATATTTTCTTGTTGTAGCTTGTGTTTCGTTCAGTCCGTTGGCGCCCTTTAGAGCTGTTAGTGTAGCTGTGCCGTTGATAGTGGTCGATCGGAGCTACTATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

122

Amino Acids

13.82

Weight (kDa)

9.66

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_N	PF16209	42 - 107	2.6e-24	Phospholipid-translocating ATPase N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0024675)

Species	Orthologous Gene IDs
pyrus_communis	pycom111g02530 pycom13g04450 pycom17g03090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	301
AccIII	TCCGGA	2 cut(s)	139, 148
AciI	CCGC	2 cut(s)	13, 206
AclWI	GGATC	4 cut(s)	25, 38, 131, 150
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	3 cut(s)	50, 113, 200
AfiI	CCNNNNNNNGG	3 cut(s)	98, 99, 100
AluBI	AGCT	5 cut(s)	46, 278, 314, 326, 354
AluI	AGCT	5 cut(s)	46, 278, 314, 326, 354
AlwI	GGATC	4 cut(s)	25, 38, 131, 150
Ama87I	CYCGRG	1 cut(s)	115
Aor13HI	TCCGGA	2 cut(s)	139, 148
AspLEI	GCGC	2 cut(s)	157, 304
AvaI	CYCGRG	1 cut(s)	115
BamHI	GGATCC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	301
BceAI	ACGGC	2 cut(s)	219, 316
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BfoI	RGCGCY	2 cut(s)	158, 305
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	32, 303
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	302
BsaWI	WCCGGW	2 cut(s)	139, 148
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 99, 100
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	2 cut(s)	127, 139
Bse8I	GATNNNNATC	1 cut(s)	141
BseAI	TCCGGA	2 cut(s)	139, 148
BseGI	GGATG	2 cut(s)	88, 145
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	98, 99, 100
BseMI	GCAATG	2 cut(s)	127, 139
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	3 cut(s)	31, 34, 63
Bsh1285I	CGRYCG	1 cut(s)	349
BshNI	GGYRCC	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	3 cut(s)	5, 140, 149
BslI	CCNNNNNNNGG	3 cut(s)	98, 99, 100
BsoBI	CYCGRG	1 cut(s)	115
Bsp13I	TCCGGA	2 cut(s)	139, 148
Bsp143I	GATC	4 cut(s)	30, 136, 142, 346
BspACI	CCGC	2 cut(s)	13, 206
BspEI	TCCGGA	2 cut(s)	139, 148
BspLI	GGNNCC	2 cut(s)	32, 303
BspPI	GGATC	4 cut(s)	25, 38, 131, 150
BspT107I	GGYRCC	1 cut(s)	301
BsrDI	GCAATG	2 cut(s)	127, 139
BsrI	ACTGG	1 cut(s)	34
BssMI	GATC	4 cut(s)	30, 136, 142, 346
BssNI	GRCGYC	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	88, 145
BstH2I	RGCGCY	2 cut(s)	158, 305
BstHHI	GCGC	2 cut(s)	157, 304
BstKTI	GATC	4 cut(s)	33, 139, 145, 349
BstMBI	GATC	4 cut(s)	30, 136, 142, 346
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 360
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	88, 145
Cac8I	GCNNGC	1 cut(s)	44
CfoI	GCGC	2 cut(s)	157, 304
Csp6I	GTAC	3 cut(s)	49, 112, 199
CviJI	RGCY	6 cut(s)	46, 278, 314, 326, 354, 363
CviKI_1	RGCY	6 cut(s)	46, 278, 314, 326, 354, 363
CviQI	GTAC	3 cut(s)	49, 112, 199
DinI	GGCGCC	1 cut(s)	303
DpnI	GATC	4 cut(s)	32, 138, 144, 348
DpnII	GATC	4 cut(s)	30, 136, 142, 346
EciI	GGCGGA	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	115
EgeI	GGCGCC	1 cut(s)	303
EheI	GGCGCC	1 cut(s)	303
FaiI	YATR	4 cut(s)	183, 260, 262, 360
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	2 cut(s)	75, 132
Fsp4HI	GCNGC	1 cut(s)	207
GlaI	GCGC	2 cut(s)	156, 303
GluI	GCNGC	1 cut(s)	207
HaeII	RGCGCY	2 cut(s)	158, 305
HapII	CCGG	3 cut(s)	5, 140, 149
HhaI	GCGC	2 cut(s)	157, 304
Hin1I	GRCGYC	1 cut(s)	302
Hin6I	GCGC	2 cut(s)	155, 302
HinP1I	GCGC	2 cut(s)	155, 302
HpaII	CCGG	3 cut(s)	5, 140, 149
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	2 cut(s)	140, 149
Hpy8I	GTNNAC	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	127, 132, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 360
Hsp92I	GRCGYC	1 cut(s)	302
HspAI	GCGC	2 cut(s)	155, 302
KasI	GGCGCC	1 cut(s)	301
Kpn2I	TCCGGA	2 cut(s)	139, 148
Kzo9I	GATC	4 cut(s)	30, 136, 142, 346
LmnI	GCTCC	1 cut(s)	351
LpnPI	CCDG	6 cut(s)	18, 47, 93, 153, 157, 162
MalI	GATC	4 cut(s)	32, 138, 144, 348
MboI	GATC	4 cut(s)	30, 136, 142, 346
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	1 cut(s)	178
Mly113I	GGCGCC	1 cut(s)	302
MnlI	CCTC	9 cut(s)	9, 12, 15, 20, 84, 101, 111, 145, 240
MroI	TCCGGA	2 cut(s)	139, 148
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	3 cut(s)	5, 140, 149
MwoI	GCNNNNNNNGC	2 cut(s)	10, 360
NarI	GGCGCC	1 cut(s)	302
NdeII	GATC	4 cut(s)	30, 136, 142, 346
NlaIV	GGNNCC	2 cut(s)	32, 303
PaeR7I	CTCGAG	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	208
Ple19I	CGATCG	1 cut(s)	349
PluTI	GGCGCC	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	32, 303
PspXI	VCTCGAGB	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	30
PvuI	CGATCG	1 cut(s)	349
RsaI	GTAC	3 cut(s)	50, 113, 200
RsaNI	GTAC	3 cut(s)	49, 112, 199
RseI	CAYNNNNRTG	1 cut(s)	132
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	4 cut(s)	30, 136, 142, 346
SetI	ASST	5 cut(s)	48, 280, 316, 328, 356
SfoI	GGCGCC	1 cut(s)	303
Sfr274I	CTCGAG	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	2 cut(s)	115, 158
SmoI	CTYRAG	2 cut(s)	115, 158
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	2 cut(s)	13, 206
SspDI	GGCGCC	1 cut(s)	301
TaqI	TCGA	3 cut(s)	116, 188, 345
TasI	AATT	1 cut(s)	178
TatI	WGTACW	2 cut(s)	48, 198
TauI	GCSGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	285
XhoI	CTCGAG	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.