pycom13g04450

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0024675
Physical Location & Seq
Forward (+)
3031646 .. 3031840
195 bp
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UTR
Exon/CDS
Intron
pycom13g04450.1

Sequence Viewer

Length: 195 bp
ATGAGAGATGAACATTCACAAATCGGGGGACCAGGATTTTCCAGAGTGGTTTACTGCAATGAACCGGAATCTTTCGAGGCTCAGATGCAAAATTACGGAGACAATTATGTTAGAAGTACAAAGTATACACTTGCTACTTTCTTGCCAAAATCTTTGTTTGAGCAGTTCAGAAGGGTGCCAACTTCTACTTCTTAG

Protein Analysis

65

Amino Acids

7.4

Weight (kDa)

6.54

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhoLip_ATPase_N PF16209 17 - 59 4.5e-15 Phospholipid-translocating ATPase N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024675)

Species Orthologous Gene IDs
pyrus_communis pycom111g02530 pycom13g04450 pycom17g03090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AccI GTMKAC 1 cut(s) 125
AfaI GTAC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 31
AjuI GAANNNNNNNTTGG 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 29
AvaII GGWCC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 33
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 30, 177
BmrFI CCNGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 30, 177
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 64
BssNAI GTATAC 1 cut(s) 126
Bst1107I GTATAC 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 81, 192
BstMAI GTCTC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstZ17I GTATAC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 117
CviJI RGCY 1 cut(s) 80
CviKI_1 RGCY 1 cut(s) 80
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 2 cut(s) 81, 192
Eco47I GGWCC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 31
FaiI YATR 2 cut(s) 108, 126
FaqI GGGAC 1 cut(s) 42
FblI GTMKAC 1 cut(s) 125
HapII CCGG 1 cut(s) 65
HinfI GANTC 1 cut(s) 68
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 52, 126
Hpy188I TCNGA 2 cut(s) 84, 170
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 2 cut(s) 52, 126
HpyAV CCTTC 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 57, 88
HpyF3I CTNAG 2 cut(s) 81, 192
LpnPI CCDG 4 cut(s) 18, 45, 55, 78
LweI GCATC 1 cut(s) 75
MluCI AATT 2 cut(s) 91, 103
MnlI CCTC 1 cut(s) 70
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 33
NlaIV GGNNCC 2 cut(s) 30, 177
PfeI GAWTC 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 30, 177
PspPI GGNCC 1 cut(s) 29
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
Sau96I GGNCC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 33
SfaNI GCATC 1 cut(s) 75
SgeI CNNG 8 cut(s) 37, 44, 45, 54, 77, 88, 143, 154
SinI GGWCC 1 cut(s) 29
Sse9I AATT 2 cut(s) 91, 103
StyD4I CCNGG 1 cut(s) 31
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 91, 103
TatI WGTACW 1 cut(s) 116
TfiI GAWTC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 24, 75
TspGWI ACGGA 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.