Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0024675

Physical Location & Seq

Genomic Coordinates Forward (+)

2033804 .. 2035694

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCAACCTTACGTCACCTTTCAATGTCTACAGGCTCATACTACATCCAAAACAAGCCCCAATAGGCATAGGAGTCCCAATAATTACTTCCATTTATATCGCACTTGTACACCCCACAAGCAAGAGATCTCAGCAGAGCCTGCAATGGAACTTAAAGATGCAAACTTTGTGCACCCGCTTTGTTGCTCTGGGTGGGTGGAAAACGCTGCTAAAATGACGGAAGGGCGGAGGAGGAGAGGGATACATTTTAGCAAACTGTATTCGTTTTCATGTATTCGATCTCCTTTCGTTGATAGTCATCCCCAAATCGGGGAAAGAGGGTACTCGAGGGTGGTGCATTGTAATGAGCCGGATAGTCCGGAGGCGCTTCAGTTGAGATACGGGGGAAATTATGTTTCGACTACCAAGTATACGGCAGCGAATTTCATTCCCAAGTCTTTGTTTGAGCAGTTTAGGAGGGTTGCCAATATATATTTTCTTGTTGTAGCTTGTGTCTCGTTTAGTCCGTTGGCACCTTTTAAAGCTGTTAGTGTTCTTGCACCGTTGTTAGTGGTGATTGGAGCTACTATGGCTAAGGAAGCTGTTGAAGATTGGCGGCGAAGAAAACAGAGTTTATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

207

Amino Acids

23.53

Weight (kDa)

9.51

Isoelectric Point (pI)

69.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024675)

Species	Orthologous Gene IDs
pyrus_communis	pycom111g02530 pycom13g04450 pycom17g03090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	511
AccI	GTMKAC	2 cut(s)	28, 410
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	3 cut(s)	176, 226, 595
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	353
AfaI	GTAC	2 cut(s)	109, 323
AfiI	CCNNNNNNNGG	3 cut(s)	308, 309, 310
AgsI	TTSAA	2 cut(s)	23, 587
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	4 cut(s)	488, 524, 563, 581
AluI	AGCT	4 cut(s)	488, 524, 563, 581
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	499
Alw44I	GTGCAC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	325
Aor13HI	TCCGGA	1 cut(s)	358
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	206, 416
ApoI	RAATTY	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	7, 565
AvaI	CYCGRG	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	193, 428
BceAI	ACGGC	1 cut(s)	429
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciVI	GTATCC	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	499
BfmI	CTRYAG	1 cut(s)	29
BfoI	RGCGCY	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	234
BglII	AGATCT	1 cut(s)	126
BisI	GCNGC	3 cut(s)	207, 417, 596
BlsI	GCNGC	3 cut(s)	208, 418, 597
BmeT110I	CYCGRG	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	513
BmsI	GCATC	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	573
BsaBI	GATNNNNATC	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 309, 310
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	358
BseGI	GGATG	2 cut(s)	44, 298
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	3 cut(s)	308, 309, 310
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	2 cut(s)	244, 247
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	193, 428
BshNI	GGYRCC	1 cut(s)	511
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	350, 359
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	3 cut(s)	308, 309, 310
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp13I	TCCGGA	1 cut(s)	358
Bsp1407I	TGTACA	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	126, 278
BspACI	CCGC	3 cut(s)	176, 226, 595
BspCNI	CTCAG	1 cut(s)	143
BspEI	TCCGGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	513
BspT107I	GGYRCC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	107
BssMI	GATC	2 cut(s)	126, 278
BssNAI	GTATAC	1 cut(s)	411
Bst1107I	GTATAC	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	258, 543
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstAUI	TGTACA	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	130, 573
BstF5I	GGATG	2 cut(s)	44, 298
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	2 cut(s)	129, 281
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	2 cut(s)	126, 278
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 569, 578
BstSFI	CTRYAG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	193, 428
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BstZ17I	GTATAC	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	44, 298
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	140
CfoI	GCGC	1 cut(s)	367
Csp6I	GTAC	2 cut(s)	108, 322
CviAII	CATG	1 cut(s)	270
CviJI	RGCY	9 cut(s)	35, 57, 139, 349, 488, 524, 563, 572, 581
CviKI_1	RGCY	9 cut(s)	35, 57, 139, 349, 488, 524, 563, 572, 581
CviQI	GTAC	2 cut(s)	108, 322
DdeI	CTNAG	2 cut(s)	130, 573
DpnI	GATC	2 cut(s)	128, 280
DpnII	GATC	2 cut(s)	126, 278
DraI	TTTAAA	1 cut(s)	520
EciI	GGCGGA	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	325
FaeI	CATG	1 cut(s)	273
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	1 cut(s)	269
FauI	CCCGC	1 cut(s)	183
FblI	GTMKAC	2 cut(s)	28, 410
Fnu4HI	GCNGC	3 cut(s)	207, 417, 596
FokI	GGATG	2 cut(s)	31, 285
Fsp4HI	GCNGC	3 cut(s)	207, 417, 596
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	3 cut(s)	207, 417, 596
HaeII	RGCGCY	1 cut(s)	368
HapII	CCGG	2 cut(s)	350, 359
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	1 cut(s)	273
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	2 cut(s)	350, 359
HphI	GGTGA	2 cut(s)	7, 565
Hpy166II	GTNNAC	4 cut(s)	29, 110, 172, 411
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	4 cut(s)	29, 110, 172, 411
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	2 cut(s)	258, 543
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	6 cut(s)	4, 143, 161, 172, 337, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 569, 578
HpyF3I	CTNAG	2 cut(s)	130, 573
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	273
HspAI	GCGC	1 cut(s)	365
Kpn2I	TCCGGA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	126, 278
LmnI	GCTCC	1 cut(s)	560
LpnPI	CCDG	5 cut(s)	17, 153, 174, 363, 372
Lsp1109I	GCAGC	2 cut(s)	193, 428
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	128, 280
MboI	GATC	2 cut(s)	126, 278
MboII	GAAGA	2 cut(s)	599, 612
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	3 cut(s)	82, 388, 421
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	7 cut(s)	222, 225, 230, 311, 321, 355, 450
MroI	TCCGGA	1 cut(s)	358
MseI	TTAA	2 cut(s)	153, 519
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	2 cut(s)	350, 359
MwoI	GCNNNNNNNGC	3 cut(s)	140, 569, 578
NdeII	GATC	2 cut(s)	126, 278
NlaIII	CATG	1 cut(s)	273
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	13
PaeR7I	CTCGAG	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PkrI	GCNGC	3 cut(s)	208, 418, 597
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	513
PspXI	VCTCGAGB	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	2 cut(s)	109, 323
RsaNI	GTAC	2 cut(s)	108, 322
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	153, 519
SatI	GCNGC	3 cut(s)	207, 417, 596
Sau3AI	GATC	2 cut(s)	126, 278
SchI	GAGTC	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	8 cut(s)	10, 15, 20, 490, 517, 526, 565, 583
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	29
Sfr274I	CTCGAG	1 cut(s)	325
SlaI	CTCGAG	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	3 cut(s)	82, 388, 421
SsiI	CCGC	3 cut(s)	176, 226, 595
TaaI	ACNGT	2 cut(s)	258, 543
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	277, 326, 398
TasI	AATT	3 cut(s)	82, 388, 421
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	598
Tru1I	TTAA	2 cut(s)	153, 519
Tru9I	TTAA	2 cut(s)	153, 519
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	206, 416
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	258, 415
TspGWI	ACGGA	2 cut(s)	233, 495
VneI	GTGCAC	1 cut(s)	170
XapI	RAATTY	1 cut(s)	421
XhoI	CTCGAG	1 cut(s)	325
XmiI	GTMKAC	2 cut(s)	28, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.