pycom11g01660

Selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0022550
Physical Location & Seq
Forward (+)
1439092 .. 1440111
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 744 bp
ATGAGCATTTTGGGTCTTACCATCGATTATGGTCCTTTTGGATTTCTGGATGCATTTGATCCAAGTTACACGCCGAATACCACGGATCTTCCTGGGAGGAGATATTGTTTTGCAAATCAGCCTGATATTGGCTTGTGGAATATTGCACAATTCACTAGAACTCTTGTAGCTGCCAAGTTGATAGATGATAAGGAGGCGAATTATGCAATGGAAAGATATGGAACCAAATTCATGGATGACTATCAAGCTATAATGACCAAAAAACTTGGTCTCCCCAAGTACATTAAACAGCTGATCAGTAAACTTCTGAATAACATGGCTATCGACAAAGTGGATTACACAAACTTTTTTCGGTTGCTATCCAATATCAAAGCTGATCCTAACATTCCCGAAGATGAGTTGTTGAACCCACTAAAGGCTGTTCTATTAGATATTGGGCAGGAGCGAAAGGAGGCATCGATCAGATGGGTGAAAATCTACATAGAGGAGCTGGCCTCTAGCGGCATCTCAAATGAGGAGAGGAAGTCATCAATGAATGCGGTGAACCCTAAATATGTTCTCAGAAACTACTTGTGCCAGAGTGCCATCGATGCAGCTGAACAAGGTGATTTTGAGGAGGTTCGGAGGGTGCTTAAAGTAATGGAACGACCATATGATGAGCAACCGGGAATGGAGAAATACGCTCGCTTGCCCCCTGCGTGGGCTTATAGGCCTGGAGTTTGCATGCTGTCCTGCTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0061

Protein Analysis

248

Amino Acids

28.23

Weight (kDa)

5.47

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelO PF02696 1 - 212 4.8e-41 Protein adenylyltransferase SelO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022550)

Species Orthologous Gene IDs
pyrus_communis pycom11g01640 pycom11g01660
rosa_chinensis RchiOBHm_Chr5g0079011 RchiOBHm_Chr5g0079021

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 501, 539
AclWI GGATC 3 cut(s) 53, 93, 371
AcsI RAATTY 1 cut(s) 227
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 4 cut(s) 128, 415, 699, 700
AgsI TTSAA 1 cut(s) 406
AjnI CCWGG 2 cut(s) 91, 712
AluBI AGCT 6 cut(s) 170, 248, 292, 374, 490, 596
AluI AGCT 6 cut(s) 170, 248, 292, 374, 490, 596
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 3 cut(s) 53, 93, 371
AoxI GGCC 2 cut(s) 492, 710
ApeKI GCWGC 2 cut(s) 170, 593
ApoI RAATTY 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 666
AsuHPI GGTGA 3 cut(s) 481, 553, 617
AvaII GGWCC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 157, 605
BccI CCATC 3 cut(s) 29, 459, 593
BciT130I CCWGG 2 cut(s) 93, 714
BclI TGATCA 1 cut(s) 294
BcnI CCSGG 1 cut(s) 666
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 2 cut(s) 156, 498
BisI GCNGC 3 cut(s) 171, 502, 594
BlsI GCNGC 3 cut(s) 172, 503, 595
Bme1390I CCNGG 3 cut(s) 93, 666, 714
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 3 cut(s) 93, 666, 714
BmsI GCATC 4 cut(s) 40, 464, 513, 580
BplI GAGNNNNNCTC 2 cut(s) 479, 511
BpmI CTGGAG 1 cut(s) 735
BpuMI CCSGG 1 cut(s) 666
Bsa29I ATCGAT 3 cut(s) 24, 458, 588
BsaBI GATNNNNATC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 81, 92
BsaXI ACNNNNNCTCC 6 cut(s) 91, 121, 255, 285, 509, 539
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 415, 699, 700
Bse3DI GCAATG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 240
BseBI CCWGG 2 cut(s) 93, 714
BseCI ATCGAT 3 cut(s) 24, 458, 588
BseDI CCNNGG 2 cut(s) 81, 92
BseGI GGATG 2 cut(s) 55, 241
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 4 cut(s) 128, 415, 699, 700
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 574
BseRI GAGGAG 4 cut(s) 112, 500, 530, 629
BseXI GCAGC 2 cut(s) 157, 605
BshFI GGCC 2 cut(s) 494, 712
BshVI ATCGAT 3 cut(s) 24, 458, 588
BsiSI CCGG 1 cut(s) 665
BslI CCNNNNNNNGG 4 cut(s) 128, 415, 699, 700
BsmAI GTCTC 1 cut(s) 275
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 2 cut(s) 494, 712
Bso31I GGTCTC 1 cut(s) 275
Bsp143I GATC 5 cut(s) 58, 85, 294, 376, 459
BspACI CCGC 2 cut(s) 501, 539
BspANI GGCC 2 cut(s) 494, 712
BspCNI CTCAG 1 cut(s) 573
BspDI ATCGAT 3 cut(s) 24, 458, 588
BspHI TCATGA 1 cut(s) 740
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 3 cut(s) 53, 93, 371
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 81, 92
BssMI GATC 5 cut(s) 58, 85, 294, 376, 459
Bst2UI CCWGG 2 cut(s) 93, 714
BstC8I GCNNGC 4 cut(s) 492, 685, 689, 725
BstDEI CTNAG 1 cut(s) 560
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 55, 241
BstKTI GATC 5 cut(s) 61, 88, 297, 379, 462
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 5 cut(s) 58, 85, 294, 376, 459
BstMWI GCNNNNNNNGC 2 cut(s) 203, 590
BstNI CCWGG 2 cut(s) 93, 714
BstNSI RCATGY 1 cut(s) 727
BstSCI CCNGG 3 cut(s) 91, 664, 712
BstV1I GCAGC 2 cut(s) 157, 605
BstX2I RGATCY 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 85
Bsu15I ATCGAT 3 cut(s) 24, 458, 588
BsuRI GGCC 2 cut(s) 494, 712
BsuTUI ATCGAT 3 cut(s) 24, 458, 588
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 55, 241
Cac8I GCNNGC 4 cut(s) 492, 685, 689, 725
CciI TCATGA 1 cut(s) 740
Cfr13I GGNCC 1 cut(s) 32
ClaI ATCGAT 3 cut(s) 24, 458, 588
Csp6I GTAC 1 cut(s) 280
CviAII CATG 4 cut(s) 232, 316, 724, 741
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 560
DpnI GATC 5 cut(s) 60, 87, 296, 378, 461
DpnII GATC 5 cut(s) 58, 85, 294, 376, 459
Eco147I AGGCCT 1 cut(s) 712
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 32
EcoRII CCWGG 2 cut(s) 91, 712
EcoT22I ATGCAT 1 cut(s) 55
FaeI CATG 4 cut(s) 235, 319, 727, 744
FatI CATG 4 cut(s) 231, 315, 723, 740
FauNDI CATATG 1 cut(s) 652
FbaI TGATCA 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 171, 502, 594
FokI GGATG 2 cut(s) 62, 248
Fsp4HI GCNGC 3 cut(s) 171, 502, 594
FspBI CTAG 2 cut(s) 156, 498
GluI GCNGC 3 cut(s) 171, 502, 594
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 2 cut(s) 494, 712
HapII CCGG 1 cut(s) 665
Hin1II CATG 4 cut(s) 235, 319, 727, 744
HpaII CCGG 1 cut(s) 665
HphI GGTGA 3 cut(s) 481, 553, 617
Hpy166II GTNNAC 2 cut(s) 302, 544
Hpy188I TCNGA 4 cut(s) 309, 464, 563, 624
Hpy188III TCNNGA 3 cut(s) 47, 389, 741
Hpy8I GTNNAC 2 cut(s) 302, 544
HpyCH4V TGCA 6 cut(s) 53, 113, 146, 206, 593, 723
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 590
HpyF3I CTNAG 1 cut(s) 560
Hsp92II CATG 4 cut(s) 235, 319, 727, 744
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 5 cut(s) 58, 85, 294, 376, 459
LmnI GCTCC 2 cut(s) 442, 487
Lsp1109I GCAGC 2 cut(s) 157, 605
LweI GCATC 4 cut(s) 40, 464, 513, 580
MaeI CTAG 2 cut(s) 156, 498
MaeIII GTNAC 1 cut(s) 65
MalI GATC 5 cut(s) 60, 87, 296, 378, 461
MboI GATC 5 cut(s) 58, 85, 294, 376, 459
MboII GAAGA 3 cut(s) 80, 404, 729
MflI RGATCY 1 cut(s) 85
MluCI AATT 3 cut(s) 149, 199, 227
Mph1103I ATGCAT 1 cut(s) 55
MseI TTAA 2 cut(s) 285, 633
MspA1I CMGCKG 2 cut(s) 292, 596
MspI CCGG 1 cut(s) 665
MspR9I CCNGG 3 cut(s) 93, 666, 714
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 2 cut(s) 93, 714
MwoI GCNNNNNNNGC 2 cut(s) 203, 590
NciI CCSGG 1 cut(s) 666
NdeI CATATG 1 cut(s) 652
NdeII GATC 5 cut(s) 58, 85, 294, 376, 459
NlaIII CATG 4 cut(s) 235, 319, 727, 744
NlaIV GGNNCC 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 55
NspI RCATGY 1 cut(s) 727
PaeI GCATGC 1 cut(s) 727
PagI TCATGA 1 cut(s) 740
PceI AGGCCT 1 cut(s) 712
PctI GAATGC 1 cut(s) 541
PkrI GCNGC 3 cut(s) 172, 503, 595
Psp6I CCWGG 2 cut(s) 91, 712
PspGI CCWGG 2 cut(s) 91, 712
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 85
PvuII CAGCTG 2 cut(s) 292, 596
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 2 cut(s) 285, 633
SatI GCNGC 3 cut(s) 171, 502, 594
Sau3AI GATC 5 cut(s) 58, 85, 294, 376, 459
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 3 cut(s) 93, 666, 714
SetI ASST 8 cut(s) 172, 250, 294, 376, 492, 598, 607, 621
SfaNI GCATC 4 cut(s) 40, 464, 513, 580
SinI GGWCC 1 cut(s) 32
SphI GCATGC 1 cut(s) 727
Sse9I AATT 3 cut(s) 149, 199, 227
SseBI AGGCCT 1 cut(s) 712
SsiI CCGC 2 cut(s) 501, 539
SspI AATATT 1 cut(s) 142
SspMI CTAG 2 cut(s) 156, 498
StuI AGGCCT 1 cut(s) 712
StyD4I CCNGG 3 cut(s) 91, 664, 712
TaqI TCGA 4 cut(s) 24, 324, 458, 588
TasI AATT 3 cut(s) 149, 199, 227
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 504
Tru1I TTAA 2 cut(s) 285, 633
Tru9I TTAA 2 cut(s) 285, 633
TseI GCWGC 2 cut(s) 170, 593
TspDTI ATGAA 3 cut(s) 220, 548, 729
TspGWI ACGGA 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 1 cut(s) 227
XceI RCATGY 1 cut(s) 727
XspI CTAG 2 cut(s) 156, 498
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.