RchiOBHm_Chr5g0079021

Selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0022550
Physical Location & Seq
Reverse (-)
84797376 .. 84799190
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35350

Sequence Viewer

Length: 555 bp
ATGTTTTATGATGGCAATCCAAAGGAGGAGCCAGGTGCAATTGTTTGCAGGGTTGCTCCATCCTTCCTGCACTTTGGATCCTACCAAATACACGCCTCTAGGGAAAATGAGGACCTTGCCATTGTTCATACTCTAGCAGACTATACCATTAGGCATCACTTCCCCCATATAGAGAACATGAGTAAAAGTGAGAGTTTGTCTTTCAGTACAGGCAACGAAGAACATTCAGTCGTAGATCTAACGTCTAACAAGTATGCAGCCTGGGTAGTGGAGGTTGCTGAACGTACTGCGTCCTTGGTTGCCAAATGGCAGGGGGTTGGTTTTACTCATGGTGTGTTGAACACTGACAATATGAGTATTTTGGGCCTCACCATTGATTATGGTCCTTTTGGATTTCTGGATGCATTTGATCCAAGTTACACTCCGAATACAACTGATCTTCCTGGGAGGAGATATTGTTTTGCAAATCAACCTGATATTGGCTTATGGAATATTATGCAATTAACCAGAACCTTGTCATCTGCCGAGTTGATAAATGAGAAGGAGGCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0061

Protein Analysis

184

Amino Acids

20.56

Weight (kDa)

5.02

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelO PF02696 6 - 174 4.7e-51 Protein adenylyltransferase SelO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022550)

Species Orthologous Gene IDs
pyrus_communis pycom11g01640 pycom11g01660
rosa_chinensis RchiOBHm_Chr5g0079011 RchiOBHm_Chr5g0079021

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 72, 85, 404
AfaI GTAC 2 cut(s) 208, 286
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 1 cut(s) 340
AjnI CCWGG 3 cut(s) 31, 260, 442
AlwI GGATC 3 cut(s) 72, 85, 404
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 1 cut(s) 257
AspS9I GGNCC 3 cut(s) 112, 364, 383
AsuHPI GGTGA 1 cut(s) 361
AvaII GGWCC 2 cut(s) 112, 383
BamHI GGATCC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 269
BccI CCATC 2 cut(s) 5, 67
BciT130I CCWGG 3 cut(s) 33, 262, 444
BfaI CTAG 2 cut(s) 99, 134
BglII AGATCT 1 cut(s) 235
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 3 cut(s) 33, 262, 444
Bme18I GGWCC 2 cut(s) 112, 383
BmgT120I GGNCC 3 cut(s) 112, 364, 383
BmiI GGNNCC 2 cut(s) 30, 79
BmrFI CCNGG 3 cut(s) 33, 262, 444
BmsI GCATC 2 cut(s) 163, 391
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 3 cut(s) 261, 294, 443
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 3 cut(s) 33, 262, 444
BseDI CCNNGG 3 cut(s) 261, 294, 443
BseGI GGATG 2 cut(s) 59, 406
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 479
BseRI GAGGAG 2 cut(s) 41, 463
BseXI GCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 53
BshFI GGCC 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 479
BsnI GGCC 1 cut(s) 366
Bsp143I GATC 4 cut(s) 77, 235, 409, 436
BspANI GGCC 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 30, 79
BspPI GGATC 3 cut(s) 72, 85, 404
BssECI CCNNGG 3 cut(s) 261, 294, 443
BssMI GATC 4 cut(s) 77, 235, 409, 436
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 3 cut(s) 33, 262, 444
BstF5I GGATG 2 cut(s) 59, 406
BstKTI GATC 4 cut(s) 80, 238, 412, 439
BstMBI GATC 4 cut(s) 77, 235, 409, 436
BstNI CCWGG 3 cut(s) 33, 262, 444
BstSCI CCNGG 3 cut(s) 31, 260, 442
BstV1I GCAGC 1 cut(s) 269
BstX2I RGATCY 2 cut(s) 77, 235
BstYI RGATCY 2 cut(s) 77, 235
BsuRI GGCC 1 cut(s) 366
BtsCI GGATG 2 cut(s) 59, 406
BtsIMutI CAGTG 1 cut(s) 342
Cfr13I GGNCC 3 cut(s) 112, 364, 383
CseI GACGC 1 cut(s) 279
Csp6I GTAC 2 cut(s) 207, 285
CviAII CATG 2 cut(s) 178, 329
CviJI RGCY 4 cut(s) 31, 260, 366, 483
CviKI_1 RGCY 4 cut(s) 31, 260, 366, 483
CviQI GTAC 2 cut(s) 207, 285
DpnI GATC 4 cut(s) 79, 237, 411, 438
DpnII GATC 4 cut(s) 77, 235, 409, 436
Eco130I CCWWGG 1 cut(s) 294
Eco47I GGWCC 2 cut(s) 112, 383
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 31, 260, 442
EcoT14I CCWWGG 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 181, 332
FatI CATG 2 cut(s) 177, 328
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 2 cut(s) 46, 413
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 2 cut(s) 99, 134
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 1 cut(s) 366
HgaI GACGC 1 cut(s) 279
Hin1II CATG 2 cut(s) 181, 332
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 1 cut(s) 426
Hpy188III TCNNGA 1 cut(s) 398
HpyAV CCTTC 2 cut(s) 73, 535
HpyCH4IV ACGT 2 cut(s) 242, 283
HpyCH4V TGCA 7 cut(s) 38, 48, 70, 257, 404, 464, 499
HpySE526I ACGT 2 cut(s) 242, 283
Hsp92II CATG 2 cut(s) 181, 332
Kzo9I GATC 4 cut(s) 77, 235, 409, 436
LmnI GCTCC 2 cut(s) 28, 61
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 2 cut(s) 163, 391
MaeI CTAG 2 cut(s) 99, 134
MaeII ACGT 2 cut(s) 242, 283
MaeIII GTNAC 1 cut(s) 416
MalI GATC 4 cut(s) 79, 237, 411, 438
MboI GATC 4 cut(s) 77, 235, 409, 436
MboII GAAGA 2 cut(s) 230, 431
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 2 cut(s) 77, 235
MluCI AATT 2 cut(s) 39, 500
MnlI CCTC 7 cut(s) 19, 103, 106, 265, 377, 441, 538
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 1 cut(s) 503
MspR9I CCNGG 3 cut(s) 33, 262, 444
MunI CAATTG 1 cut(s) 39
MvaI CCWGG 3 cut(s) 33, 262, 444
NdeII GATC 4 cut(s) 77, 235, 409, 436
NlaIII CATG 2 cut(s) 181, 332
NlaIV GGNNCC 2 cut(s) 30, 79
NmeAIII GCCGAG 1 cut(s) 550
NsiI ATGCAT 1 cut(s) 406
PkrI GCNGC 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 3 cut(s) 31, 260, 442
PspGI CCWGG 3 cut(s) 31, 260, 442
PspN4I GGNNCC 2 cut(s) 30, 79
PspPI GGNCC 3 cut(s) 112, 364, 383
PspPPI RGGWCCY 1 cut(s) 112
PsuI RGATCY 2 cut(s) 77, 235
RsaI GTAC 2 cut(s) 208, 286
RsaNI GTAC 2 cut(s) 207, 285
SaqAI TTAA 1 cut(s) 503
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 4 cut(s) 77, 235, 409, 436
Sau96I GGNCC 3 cut(s) 112, 364, 383
ScrFI CCNGG 3 cut(s) 33, 262, 444
SetI ASST 7 cut(s) 37, 117, 245, 276, 286, 475, 515
SfaNI GCATC 2 cut(s) 163, 391
SinI GGWCC 2 cut(s) 112, 383
Sse9I AATT 2 cut(s) 39, 500
SspI AATATT 1 cut(s) 493
SspMI CTAG 2 cut(s) 99, 134
StyD4I CCNGG 3 cut(s) 31, 260, 442
StyI CCWWGG 1 cut(s) 294
TaiI ACGT 2 cut(s) 245, 286
TasI AATT 2 cut(s) 39, 500
TatI WGTACW 1 cut(s) 206
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TscAI CASTG 1 cut(s) 349
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 112, 383
XspI CTAG 2 cut(s) 99, 134
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.