RchiOBHm_Chr5g0079011

Selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0022550
Physical Location & Seq
Reverse (-)
84796184 .. 84797374
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35349

Sequence Viewer

Length: 537 bp
ATGGAAAGATATGGAACTAGATTCATGGATGATTATCAAGCTATAATGACAAAAAAACTTGGTCTCCCCAAGTATGTCAAACAGTTGATCAGTAAACTTCTTAATAATATGGCTGTTGACAAAGTGGATTACACAAACTTTTTCCAGTTGCTTTCCAATATCAAAGCTGATCCCAGCATCCCAGATGAGGAGTTGTTAAACCCACTAAAGGCTGTTTTATTAGACATTGGCCAGGAGCGGAAGGAGGCATGGATCAGCTGGGTGAGAATCTACATAGAGGAGCTATCTGCTAGTGGCATCCCAGATGAGGAGAGGAAGGCCTCAATGAATGCGGTGAACCCTAAAAATGTTCTCAGAAACTACTTATGCCAGAGTGCTATTGATGCAGCTGAACAAGGTGATTTTGGAGAGGTTCAAAGGGTGCTTAAAGTAATGGAACGCCCATTTGATGAGCAGCCGGGAATGGAAAAATATGCTCGCTTGCCCCCAGCATGGGCTTATCGGCCTGGAGTTTGCATGCTTTCTTGCTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0061

Protein Analysis

178

Amino Acids

20.37

Weight (kDa)

5.37

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelO PF02696 1 - 143 2.8e-15 Protein adenylyltransferase SelO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022550)

Species Orthologous Gene IDs
pyrus_communis pycom11g01640 pycom11g01660
rosa_chinensis RchiOBHm_Chr5g0079011 RchiOBHm_Chr5g0079021

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 238
AciI CCGC 2 cut(s) 238, 332
AclWI GGATC 2 cut(s) 164, 260
AcoI YGGCCR 1 cut(s) 229
AfiI CCNNNNNNNGG 5 cut(s) 187, 208, 307, 492, 493
AgsI TTSAA 1 cut(s) 416
AjnI CCWGG 2 cut(s) 231, 505
AluBI AGCT 5 cut(s) 41, 167, 258, 283, 389
AluI AGCT 5 cut(s) 41, 167, 258, 283, 389
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 2 cut(s) 164, 260
AoxI GGCC 3 cut(s) 229, 318, 503
ApeKI GCWGC 2 cut(s) 386, 454
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 3 cut(s) 274, 346, 410
BalI TGGCCA 1 cut(s) 231
BbvI GCAGC 2 cut(s) 398, 466
BciT130I CCWGG 2 cut(s) 233, 507
BclI TGATCA 1 cut(s) 87
BcnI CCSGG 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 2 cut(s) 18, 291
BisI GCNGC 2 cut(s) 387, 455
BlsI GCNGC 2 cut(s) 388, 456
Bme1390I CCNGG 3 cut(s) 233, 459, 507
BmrFI CCNGG 3 cut(s) 233, 459, 507
BmsI GCATC 3 cut(s) 186, 306, 373
BpmI CTGGAG 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 5 cut(s) 187, 208, 307, 492, 493
Bse1I ACTGG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 2 cut(s) 233, 507
BseGI GGATG 3 cut(s) 34, 177, 297
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 5 cut(s) 187, 208, 307, 492, 493
BseMII CTCAG 1 cut(s) 367
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 3 cut(s) 203, 293, 323
BseXI GCAGC 2 cut(s) 398, 466
BseYI CCCAGC 3 cut(s) 173, 258, 487
BshFI GGCC 3 cut(s) 231, 320, 505
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 5 cut(s) 187, 208, 307, 492, 493
BsmAI GTCTC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 3 cut(s) 231, 320, 505
Bso31I GGTCTC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 87, 169, 252
BspACI CCGC 2 cut(s) 238, 332
BspANI GGCC 3 cut(s) 231, 320, 505
BspCNI CTCAG 1 cut(s) 366
BspHI TCATGA 1 cut(s) 533
BspPI GGATC 2 cut(s) 164, 260
BspTNI GGTCTC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 145
BssMI GATC 3 cut(s) 87, 169, 252
Bst2UI CCWGG 2 cut(s) 233, 507
Bst4CI ACNGT 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 478, 482, 518
BstDEI CTNAG 1 cut(s) 353
BstF5I GGATG 3 cut(s) 34, 177, 297
BstKTI GATC 3 cut(s) 90, 172, 255
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 3 cut(s) 87, 169, 252
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 2 cut(s) 233, 507
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 3 cut(s) 231, 457, 505
BstV1I GCAGC 2 cut(s) 398, 466
BsuRI GGCC 3 cut(s) 231, 320, 505
BtsCI GGATG 3 cut(s) 34, 177, 297
Cac8I GCNNGC 3 cut(s) 478, 482, 518
CciI TCATGA 1 cut(s) 533
CviAII CATG 5 cut(s) 25, 249, 492, 517, 534
DdeI CTNAG 1 cut(s) 353
DpnI GATC 3 cut(s) 89, 171, 254
DpnII GATC 3 cut(s) 87, 169, 252
EaeI YGGCCR 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 231, 505
FaeI CATG 5 cut(s) 28, 252, 495, 520, 537
FatI CATG 5 cut(s) 24, 248, 491, 516, 533
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 387, 455
FokI GGATG 3 cut(s) 41, 164, 284
Fsp4HI GCNGC 2 cut(s) 387, 455
FspBI CTAG 2 cut(s) 18, 291
GluI GCNGC 2 cut(s) 387, 455
GsaI CCCAGC 3 cut(s) 177, 262, 491
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 3 cut(s) 231, 320, 505
HapII CCGG 1 cut(s) 458
Hin1II CATG 5 cut(s) 28, 252, 495, 520, 537
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 2 cut(s) 21, 267
HpaII CCGG 1 cut(s) 458
HphI GGTGA 3 cut(s) 274, 346, 410
Hpy166II GTNNAC 3 cut(s) 95, 118, 337
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 1 cut(s) 534
Hpy8I GTNNAC 3 cut(s) 95, 118, 337
HpyAV CCTTC 2 cut(s) 235, 310
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 386, 516
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 1 cut(s) 353
Hsp92II CATG 5 cut(s) 28, 252, 495, 520, 537
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 3 cut(s) 87, 169, 252
LmnI GCTCC 2 cut(s) 235, 280
Lsp1109I GCAGC 2 cut(s) 398, 466
LweI GCATC 3 cut(s) 186, 306, 373
MaeI CTAG 2 cut(s) 18, 291
MalI GATC 3 cut(s) 89, 171, 254
MbiI CCGCTC 1 cut(s) 238
MboI GATC 3 cut(s) 87, 169, 252
MlsI TGGCCA 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 231
MnlI CCTC 7 cut(s) 181, 238, 271, 301, 306, 331, 403
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
MseI TTAA 3 cut(s) 102, 197, 426
Msp20I TGGCCA 1 cut(s) 231
MspA1I CMGCKG 2 cut(s) 258, 389
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 3 cut(s) 233, 459, 507
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 2 cut(s) 233, 507
MwoI GCNNNNNNNGC 1 cut(s) 383
NciI CCSGG 1 cut(s) 459
NdeII GATC 3 cut(s) 87, 169, 252
NlaIII CATG 5 cut(s) 28, 252, 495, 520, 537
NspI RCATGY 1 cut(s) 520
PaeI GCATGC 1 cut(s) 520
PagI TCATGA 1 cut(s) 533
PceI AGGCCT 1 cut(s) 320
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 21, 267
PkrI GCNGC 2 cut(s) 388, 456
Psp6I CCWGG 2 cut(s) 231, 505
PspFI CCCAGC 3 cut(s) 173, 258, 487
PspGI CCWGG 2 cut(s) 231, 505
PvuII CAGCTG 2 cut(s) 258, 389
SaqAI TTAA 3 cut(s) 102, 197, 426
SatI GCNGC 2 cut(s) 387, 455
Sau3AI GATC 3 cut(s) 87, 169, 252
ScrFI CCNGG 3 cut(s) 233, 459, 507
SetI ASST 7 cut(s) 43, 169, 260, 285, 391, 400, 414
SfaNI GCATC 3 cut(s) 186, 306, 373
SphI GCATGC 1 cut(s) 520
SseBI AGGCCT 1 cut(s) 320
SsiI CCGC 2 cut(s) 238, 332
SspMI CTAG 2 cut(s) 18, 291
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 3 cut(s) 231, 457, 505
TaaI ACNGT 1 cut(s) 84
TfiI GAWTC 2 cut(s) 21, 267
Tru1I TTAA 3 cut(s) 102, 197, 426
Tru9I TTAA 3 cut(s) 102, 197, 426
TseI GCWGC 2 cut(s) 386, 454
TspDTI ATGAA 2 cut(s) 13, 341
XceI RCATGY 1 cut(s) 520
XspI CTAG 2 cut(s) 18, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.