Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0021846

Physical Location & Seq

Genomic Coordinates Forward (+)

1770773 .. 1771483

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCGCCAAAGAGAAATTCATCCTATTGGTCAGTCCAAGAGACCACGGATCGCAATCTTGGCAACTCCACTTAACCAATCCTACCCAAATTCCAACCACTTTCCTATTTCCAATTCCCCAATTTTCCCGAGAAACAAACAGATCCCAGAACACTTAGAGCCATCCCTCTCAATTTTATCGATGGCACGCACCAAGCAAACCGCCCGGAAATCGACCGGAGGCAAGGCCCCAAGGAAGCAGCTGGCCACCAAGGCTGCCCGGAAGTCTGCTCCGGCGACCGGAGGAGTGAAGAAGCCTCACCGCTTCAGGCCGGGAACTGTGGCGCTGAGAGAGATCAGGAAGTACCAGAAGAGCACAGAGCTCCTGATCCGCAAGCTGCCATTCCAAAGGCTGGTGAGGGAGATCGCCCAGGATTTCAAGACCGATCTGAGGTTCCAGAGCAGCGCCGTGGCGGCGCTCCAGGAGGCGGCGGAGGCGTACTTGGTGGGACTGTTCGAGGACACCAACCTCTGCGCGATACATGCCAAGAGAGTTACCATTATGCCCAAGGATATCCAGCTCGCTCGGAGGATTAGGGGCGAGAGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000785 GO:0000786 GO:0000819 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009987 GO:0016043 GO:0019237 GO:0022402 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0048285 GO:0051276 GO:0051382 GO:0051383 GO:0065003 GO:0065004 GO:0070925 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

197

Amino Acids

22.12

Weight (kDa)

11.33

Isoelectric Point (pI)

52.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	104 - 191	2.3e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65350
pyrus_communis	pycom11g02050
rosa_samantha	Rh5BG533700 Rh5CG557300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AccII	CGCG	1 cut(s)	515
AciI	CCGC	6 cut(s)	201, 301, 370, 452, 467, 470
AclWI	GGATC	3 cut(s)	56, 136, 361
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	15, 88
AcuI	CTGAAG	1 cut(s)	289
AfaI	GTAC	2 cut(s)	344, 479
AfiI	CCNNNNNNNGG	4 cut(s)	278, 391, 429, 466
AgsI	TTSAA	1 cut(s)	418
AjnI	CCWGG	2 cut(s)	408, 459
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	4 cut(s)	241, 361, 376, 559
AluI	AGCT	4 cut(s)	241, 361, 376, 559
Alw21I	GWGCWC	2 cut(s)	356, 363
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	3 cut(s)	56, 136, 361
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	3 cut(s)	225, 243, 308
ApeKI	GCWGC	4 cut(s)	238, 254, 376, 441
ApoI	RAATTY	2 cut(s)	15, 88
AspLEI	GCGC	5 cut(s)	6, 325, 446, 457, 515
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	3 cut(s)	205, 259, 312
AsuHPI	GGTGA	2 cut(s)	290, 406
AvaI	CYCGRG	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	2 cut(s)	356, 363
BbvI	GCAGC	4 cut(s)	241, 250, 363, 453
BccI	CCATC	2 cut(s)	169, 175
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	2 cut(s)	410, 461
BcnI	CCSGG	3 cut(s)	205, 259, 312
BcoDI	GTCTC	1 cut(s)	34
BfoI	RGCGCY	3 cut(s)	326, 447, 458
BglI	GCCNNNNNGGC	2 cut(s)	251, 452
BisI	GCNGC	6 cut(s)	239, 255, 377, 442, 453, 468
BlsI	GCNGC	6 cut(s)	240, 256, 378, 443, 454, 469
Bme1390I	CCNGG	5 cut(s)	205, 259, 312, 410, 461
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	228, 434
BmrFI	CCNGG	5 cut(s)	205, 259, 312, 410, 461
BpmI	CTGGAG	1 cut(s)	443
BpuMI	CCSGG	3 cut(s)	205, 259, 312
Bsa29I	ATCGAT	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	6 cut(s)	44, 230, 249, 408, 447, 546
BsaWI	WCCGGW	2 cut(s)	215, 278
Bsc4I	CCNNNNNNNGG	4 cut(s)	278, 391, 429, 466
Bse8I	GATNNNNATC	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	410, 461
BseCI	ATCGAT	1 cut(s)	179
BseDI	CCNNGG	6 cut(s)	44, 230, 249, 408, 447, 546
BseGI	GGATG	2 cut(s)	19, 161
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	4 cut(s)	278, 391, 429, 466
BseMII	CTCAG	2 cut(s)	317, 419
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	4 cut(s)	241, 250, 363, 453
Bsh1236I	CGCG	1 cut(s)	515
Bsh1285I	CGRYCG	2 cut(s)	216, 279
BshFI	GGCC	3 cut(s)	227, 245, 310
BshVI	ATCGAT	1 cut(s)	179
BsiEI	CGRYCG	2 cut(s)	216, 279
BsiHKAI	GWGCWC	2 cut(s)	356, 363
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	6 cut(s)	205, 216, 259, 272, 279, 311
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	4 cut(s)	278, 391, 429, 466
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	3 cut(s)	227, 245, 310
Bso31I	GGTCTC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	356, 363
Bsp143I	GATC	6 cut(s)	48, 141, 333, 366, 402, 424
BspACI	CCGC	6 cut(s)	201, 301, 370, 452, 467, 470
BspANI	GGCC	3 cut(s)	227, 245, 310
BspCNI	CTCAG	2 cut(s)	318, 420
BspDI	ATCGAT	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	2 cut(s)	228, 434
BspPI	GGATC	3 cut(s)	56, 136, 361
BspQI	GCTCTTC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	34
BssECI	CCNNGG	6 cut(s)	44, 230, 249, 408, 447, 546
BssMI	GATC	6 cut(s)	48, 141, 333, 366, 402, 424
BssT1I	CCWWGG	3 cut(s)	230, 249, 546
Bst2UI	CCWGG	2 cut(s)	410, 461
Bst4CI	ACNGT	2 cut(s)	319, 492
Bst6I	CTCTTC	1 cut(s)	344
BstC8I	GCNNGC	4 cut(s)	187, 243, 374, 561
BstDEI	CTNAG	3 cut(s)	154, 326, 428
BstDSI	CCRYGG	2 cut(s)	44, 447
BstF5I	GGATG	2 cut(s)	19, 161
BstFNI	CGCG	1 cut(s)	515
BstH2I	RGCGCY	3 cut(s)	326, 447, 458
BstHHI	GCGC	5 cut(s)	6, 325, 446, 457, 515
BstKTI	GATC	6 cut(s)	51, 144, 336, 369, 405, 427
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	6 cut(s)	48, 141, 333, 366, 402, 424
BstMCI	CGRYCG	2 cut(s)	216, 279
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 251, 452, 473, 521
BstNI	CCWGG	2 cut(s)	410, 461
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	5 cut(s)	203, 257, 310, 408, 459
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	4 cut(s)	241, 250, 363, 453
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
Bsu15I	ATCGAT	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	227, 245, 310
BsuTUI	ATCGAT	1 cut(s)	179
BtgI	CCRYGG	2 cut(s)	44, 447
BtsCI	GGATG	2 cut(s)	19, 161
Cac8I	GCNNGC	4 cut(s)	187, 243, 374, 561
CfoI	GCGC	5 cut(s)	6, 325, 446, 457, 515
Cfr13I	GGNCC	1 cut(s)	226
ClaI	ATCGAT	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	343, 478
CviAII	CATG	1 cut(s)	521
CviQI	GTAC	2 cut(s)	343, 478
DdeI	CTNAG	3 cut(s)	154, 326, 428
DpnI	GATC	6 cut(s)	50, 143, 335, 368, 404, 426
DpnII	GATC	6 cut(s)	48, 141, 333, 366, 402, 424
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
EciI	GGCGGA	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	3 cut(s)	230, 249, 546
Eco24I	GRGCYC	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	34
Eco32I	GATATC	1 cut(s)	553
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	408, 459
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	3 cut(s)	230, 249, 546
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	3 cut(s)	230, 249, 546
FaeI	CATG	1 cut(s)	524
FaiI	YATR	2 cut(s)	522, 542
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	1 cut(s)	520
Fnu4HI	GCNGC	6 cut(s)	239, 255, 377, 442, 453, 468
FokI	GGATG	2 cut(s)	6, 148
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	6 cut(s)	239, 255, 377, 442, 453, 468
GlaI	GCGC	5 cut(s)	5, 324, 445, 456, 514
GluI	GCNGC	6 cut(s)	239, 255, 377, 442, 453, 468
GsuI	CTGGAG	1 cut(s)	443
HaeII	RGCGCY	3 cut(s)	326, 447, 458
HaeIII	GGCC	3 cut(s)	227, 245, 310
HapII	CCGG	6 cut(s)	205, 216, 259, 272, 279, 311
HhaI	GCGC	5 cut(s)	6, 325, 446, 457, 515
Hin1II	CATG	1 cut(s)	524
Hin6I	GCGC	5 cut(s)	4, 323, 444, 455, 513
HinP1I	GCGC	5 cut(s)	4, 323, 444, 455, 513
HpaII	CCGG	6 cut(s)	205, 216, 259, 272, 279, 311
HphI	GGTGA	2 cut(s)	290, 406
Hpy188I	TCNGA	2 cut(s)	429, 567
Hpy188III	TCNNGA	5 cut(s)	127, 337, 364, 418, 436
HpyCH4III	ACNGT	2 cut(s)	319, 492
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 251, 452, 473, 521
HpyF3I	CTNAG	3 cut(s)	154, 326, 428
Hsp92II	CATG	1 cut(s)	524
HspAI	GCGC	5 cut(s)	4, 323, 444, 455, 513
Kzo9I	GATC	6 cut(s)	48, 141, 333, 366, 402, 424
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	3 cut(s)	274, 366, 462
Lsp1109I	GCAGC	4 cut(s)	241, 250, 363, 453
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	6 cut(s)	50, 143, 335, 368, 404, 426
MboI	GATC	6 cut(s)	48, 141, 333, 366, 402, 424
MboII	GAAGA	2 cut(s)	301, 361
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	2 cut(s)	356, 363
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	5 cut(s)	15, 88, 112, 120, 171
MluNI	TGGCCA	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	117
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	6 cut(s)	205, 216, 259, 272, 279, 311
MspR9I	CCNGG	5 cut(s)	205, 259, 312, 410, 461
MvaI	CCWGG	2 cut(s)	410, 461
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	5 cut(s)	59, 251, 452, 473, 521
NciI	CCSGG	3 cut(s)	205, 259, 312
NdeII	GATC	6 cut(s)	48, 141, 333, 366, 402, 424
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	2 cut(s)	228, 434
NspI	RCATGY	1 cut(s)	524
PciSI	GCTCTTC	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	391
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	6 cut(s)	240, 256, 378, 443, 454, 469
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	408, 459
PspGI	CCWGG	2 cut(s)	408, 459
PspN4I	GGNNCC	2 cut(s)	228, 434
PspPI	GGNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	2 cut(s)	344, 479
RsaNI	GTAC	2 cut(s)	343, 478
SacI	GAGCTC	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	6 cut(s)	239, 255, 377, 442, 453, 468
Sau3AI	GATC	6 cut(s)	48, 141, 333, 366, 402, 424
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	5 cut(s)	205, 259, 312, 410, 461
SduI	GDGCHC	2 cut(s)	356, 363
SetI	ASST	6 cut(s)	243, 363, 378, 434, 510, 561
Sse9I	AATT	5 cut(s)	15, 88, 112, 120, 171
SsiI	CCGC	6 cut(s)	201, 301, 370, 452, 467, 470
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	5 cut(s)	203, 257, 310, 408, 459
StyI	CCWWGG	3 cut(s)	230, 249, 546
TaaI	ACNGT	2 cut(s)	319, 492
TaqI	TCGA	3 cut(s)	179, 212, 495
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	5 cut(s)	15, 88, 112, 120, 171
TauI	GCSGC	2 cut(s)	455, 470
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseI	GCWGC	4 cut(s)	238, 254, 376, 441
TspDTI	ATGAA	1 cut(s)	8
TspGWI	ACGGA	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	391
XapI	RAATTY	2 cut(s)	15, 88
XceI	RCATGY	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.