Rh5CG557300

histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0021846
Physical Location & Seq
Reverse (-)
77871337 .. 77871747
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG557300.1

Sequence Viewer

Length: 411 bp
ATGGCTCGTACCAAGCAGACCGCTCGCAAGTCCACCGGAGGAAAGGCGCCTAGGAAACAGCTGGCGACCAAGGCGGCCCGGAAGTCGGCTCCGGCGACCGGAGGAGTGAAGAAGCCTCACCGGTTCAGGCCGGGAACGGTGGCGCTGAGAGAGATCAGGAAGTACCAGAAGAGCACGGAGCTTCTGATCCGCAAGCTTCCGTTCCAGAGGCTTGTGAGGGAGATTGCTCAGGATTTCAAGACGGATCTCCGATTCCAGAGCAGCGCCGTGACGGCGCTTCAGGAGGCGGCGGAGGCGTACCTGGTGGGGCTTTTCGAAGACACAAATCTCTGCGCTATTCATGCTAAGAGGGTTACTATAATGCCCAAGGATATTCAGCTTGCGAGGAGAATCAGAGGCGAGAGGGCTTAG

Protein Analysis

136

Amino Acids

15.3

Weight (kDa)

11.29

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 6.3e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65350
pyrus_communis pycom11g02050
rosa_samantha Rh5BG533700 Rh5CG557300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 23
AciI CCGC 5 cut(s) 21, 74, 190, 287, 290
AclWI GGATC 2 cut(s) 181, 252
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 3 cut(s) 10, 164, 299
AfiI CCNNNNNNNGG 2 cut(s) 85, 98
AgeI ACCGGT 1 cut(s) 120
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 4 cut(s) 61, 181, 196, 379
AluI AGCT 4 cut(s) 61, 181, 196, 379
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 2 cut(s) 181, 252
AoxI GGCC 2 cut(s) 75, 128
ApeKI GCWGC 1 cut(s) 261
AsiGI ACCGGT 1 cut(s) 120
AspA2I CCTAGG 1 cut(s) 50
AspLEI GCGC 5 cut(s) 49, 145, 266, 277, 335
AspS9I GGNCC 1 cut(s) 76
AsuC2I CCSGG 2 cut(s) 79, 132
AsuHPI GGTGA 1 cut(s) 110
AsuII TTCGAA 1 cut(s) 315
AvrII CCTAGG 1 cut(s) 50
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 273
BceAI ACGGC 2 cut(s) 251, 288
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 1 cut(s) 302
BcnI CCSGG 2 cut(s) 79, 132
BfaI CTAG 1 cut(s) 51
BfoI RGCGCY 4 cut(s) 50, 146, 267, 278
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 3 cut(s) 75, 262, 288
BlnI CCTAGG 1 cut(s) 50
BlsI GCNGC 3 cut(s) 76, 263, 289
Bme1390I CCNGG 3 cut(s) 79, 132, 302
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 48, 90
BmrFI CCNGG 3 cut(s) 79, 132, 302
BpiI GAAGAC 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 315
BpuMI CCSGG 2 cut(s) 79, 132
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 50, 69, 366
BsaWI WCCGGW 3 cut(s) 35, 98, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 98
Bse118I RCCGGY 1 cut(s) 120
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 50, 69, 366
BseLI CCNNNNNNNGG 2 cut(s) 85, 98
BseMII CTCAG 2 cut(s) 137, 242
BseRI GAGGAG 2 cut(s) 117, 400
BseXI GCAGC 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 77, 130
BshNI GGYRCC 1 cut(s) 46
BshTI ACCGGT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
BslI CCNNNNNNNGG 2 cut(s) 85, 98
BsnI GGCC 2 cut(s) 77, 130
Bsp119I TTCGAA 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 153, 186, 244
BspACI CCGC 5 cut(s) 21, 74, 190, 287, 290
BspANI GGCC 2 cut(s) 77, 130
BspCNI CTCAG 2 cut(s) 138, 241
BspLI GGNNCC 2 cut(s) 48, 90
BspPI GGATC 2 cut(s) 181, 252
BspQI GCTCTTC 1 cut(s) 164
BspT104I TTCGAA 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 3 cut(s) 50, 69, 366
BssMI GATC 3 cut(s) 153, 186, 244
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 3 cut(s) 50, 69, 366
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 25, 63, 194, 381
BstDEI CTNAG 4 cut(s) 146, 228, 345, 408
BstH2I RGCGCY 4 cut(s) 50, 146, 267, 278
BstHHI GCGC 5 cut(s) 49, 145, 266, 277, 335
BstKTI GATC 3 cut(s) 156, 189, 247
BstMBI GATC 3 cut(s) 153, 186, 244
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 77, 130, 300
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 2 cut(s) 77, 130
Cac8I GCNNGC 4 cut(s) 25, 63, 194, 381
CfoI GCGC 5 cut(s) 49, 145, 266, 277, 335
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 76
CsiI ACCWGGT 1 cut(s) 300
Csp6I GTAC 3 cut(s) 9, 163, 298
CspAI ACCGGT 1 cut(s) 120
CviAII CATG 1 cut(s) 341
CviQI GTAC 3 cut(s) 9, 163, 298
DdeI CTNAG 4 cut(s) 146, 228, 345, 408
DinI GGCGCC 1 cut(s) 48
DpnI GATC 3 cut(s) 155, 188, 246
DpnII GATC 3 cut(s) 153, 186, 244
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 3 cut(s) 50, 69, 366
Eco57I CTGAAG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 3 cut(s) 50, 69, 366
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
ErhI CCWWGG 3 cut(s) 50, 69, 366
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 359
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 75, 262, 288
Fsp4HI GCNGC 3 cut(s) 75, 262, 288
FspBI CTAG 1 cut(s) 51
GlaI GCGC 5 cut(s) 48, 144, 265, 276, 334
GluI GCNGC 3 cut(s) 75, 262, 288
HaeII RGCGCY 4 cut(s) 50, 146, 267, 278
HaeIII GGCC 2 cut(s) 77, 130
HapII CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
HhaI GCGC 5 cut(s) 49, 145, 266, 277, 335
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 5 cut(s) 47, 143, 264, 275, 333
HinP1I GCGC 5 cut(s) 47, 143, 264, 275, 333
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 2 cut(s) 252, 390
HpaII CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 3 cut(s) 186, 251, 395
Hpy188III TCNNGA 6 cut(s) 157, 205, 230, 238, 256, 281
Hpy8I GTNNAC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
HpyF3I CTNAG 4 cut(s) 146, 228, 345, 408
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 5 cut(s) 47, 143, 264, 275, 333
KasI GGCGCC 1 cut(s) 46
Kzo9I GATC 3 cut(s) 153, 186, 244
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 94, 178
Lsp1109I GCAGC 1 cut(s) 273
MabI ACCWGGT 1 cut(s) 300
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 268, 352
MalI GATC 3 cut(s) 155, 188, 246
MbiI CCGCTC 1 cut(s) 23
MboI GATC 3 cut(s) 153, 186, 244
MboII GAAGA 3 cut(s) 121, 181, 329
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
MspR9I CCNGG 3 cut(s) 79, 132, 302
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 2 cut(s) 79, 132
NdeII GATC 3 cut(s) 153, 186, 244
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 48, 90
NmuCI GTSAC 1 cut(s) 268
NspV TTCGAA 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PfeI GAWTC 2 cut(s) 252, 390
PinAI ACCGGT 1 cut(s) 120
PkrI GCNGC 3 cut(s) 76, 263, 289
PluTI GGCGCC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 48, 90
PspPI GGNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 3 cut(s) 10, 164, 299
RsaNI GTAC 3 cut(s) 9, 163, 298
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 3 cut(s) 75, 262, 288
Sau3AI GATC 3 cut(s) 153, 186, 244
Sau96I GGNCC 1 cut(s) 76
ScrFI CCNGG 3 cut(s) 79, 132, 302
SduI GDGCHC 1 cut(s) 176
SetI ASST 5 cut(s) 63, 183, 198, 303, 381
SexAI ACCWGGT 1 cut(s) 300
SfoI GGCGCC 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 315
SsiI CCGC 5 cut(s) 21, 74, 190, 287, 290
SspDI GGCGCC 1 cut(s) 46
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 3 cut(s) 77, 130, 300
StyI CCWWGG 3 cut(s) 50, 69, 366
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 315
TauI GCSGC 2 cut(s) 77, 290
TfiI GAWTC 2 cut(s) 252, 390
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 261
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 3 cut(s) 189, 191, 257
XmaJI CCTAGG 1 cut(s) 50
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.