pycom11g07220

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0024676
Physical Location & Seq
Forward (+)
5483633 .. 5483827
195 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07220.1

Sequence Viewer

Length: 195 bp
ATGGGAACTATTGTTAGGCTTTCCCATCATTCCCAATCCTTTGGAATTGGCTGCATTGACAACTTATTTGGAAGTGTTGAGAGTCTTGATTTACAGCTTTTTCGAACTAAAGAATGTCGAGACATGTTGTTACATCCCCGCAATGGAGCTGAAGATCTATTGAGGAACCTGAAATTGAAATATCGATCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

65

Amino Acids

7.36

Weight (kDa)

8.8

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 1 - 60 1.6e-18 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024676)

Species Orthologous Gene IDs
pyrus_communis pycom11g07220
rosa_roxburghii Rroxscaffold_1G00013000 Rroxscaffold_1G00013690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 2 cut(s) 97, 149
AluI AGCT 2 cut(s) 97, 149
Alw26I GTCTC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 51
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AsuII TTCGAA 1 cut(s) 103
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 114
BglII AGATCT 1 cut(s) 154
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 103
Bsa29I ATCGAT 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 148
BseCI ATCGAT 1 cut(s) 184
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 114
Bsp119I TTCGAA 1 cut(s) 103
Bsp143I GATC 2 cut(s) 154, 185
BspACI CCGC 1 cut(s) 139
BspDI ATCGAT 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 167
BspT104I TTCGAA 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 148
BssMI GATC 2 cut(s) 154, 185
BstBI TTCGAA 1 cut(s) 103
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 2 cut(s) 157, 188
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 2 cut(s) 154, 185
BstNSI RCATGY 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 41
BstYI RGATCY 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 184
BsuTUI ATCGAT 1 cut(s) 184
BtsCI GGATG 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 184
CviAII CATG 1 cut(s) 124
CviJI RGCY 4 cut(s) 19, 51, 97, 149
CviKI_1 RGCY 4 cut(s) 19, 51, 97, 149
DpnI GATC 2 cut(s) 156, 187
DpnII GATC 2 cut(s) 154, 185
Eco57I CTGAAG 1 cut(s) 171
FaeI CATG 1 cut(s) 127
FaiI YATR 1 cut(s) 125
FatI CATG 1 cut(s) 123
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 52
Hin1II CATG 1 cut(s) 127
HinfI GANTC 1 cut(s) 82
Hpy188III TCNNGA 2 cut(s) 86, 119
HpyCH4V TGCA 1 cut(s) 54
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 2 cut(s) 154, 185
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 1 cut(s) 182
Lsp1109I GCAGC 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 129
MalI GATC 2 cut(s) 156, 187
MboI GATC 2 cut(s) 154, 185
MboII GAAGA 1 cut(s) 164
MflI RGATCY 1 cut(s) 154
MluCI AATT 2 cut(s) 45, 173
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 1 cut(s) 156
NdeII GATC 2 cut(s) 154, 185
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 167
NspI RCATGY 1 cut(s) 127
NspV TTCGAA 1 cut(s) 103
PciI ACATGT 1 cut(s) 123
PkrI GCNGC 1 cut(s) 53
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PscI ACATGT 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 167
PsuI RGATCY 1 cut(s) 154
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 2 cut(s) 154, 185
SchI GAGTC 1 cut(s) 91
SetI ASST 3 cut(s) 99, 151, 171
SfuI TTCGAA 1 cut(s) 103
SgeI CNNG 5 cut(s) 98, 131, 136, 150, 181
Sse9I AATT 2 cut(s) 45, 173
SsiI CCGC 1 cut(s) 139
TaqI TCGA 3 cut(s) 103, 118, 184
TasI AATT 2 cut(s) 45, 173
TseI GCWGC 1 cut(s) 51
XceI RCATGY 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.