Rroxscaffold_1G00013000

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0024676
Physical Location & Seq
Forward (+)
16024451 .. 16025096
646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013000.1

Sequence Viewer

Length: 459 bp
ATGGATTTACAATATTGTCGCACTAAAGAATGTAAAGACATGTTGTTATATCCCAAAATTGGAGCTGAATTCCTAGTGAGGAACCTCATACTGAAAACTGATGATAGTGAGCCTTCACGCTACTTTAAGTGCTCTCATTGGAAGTGTGACTTGTTCCATAATGGTACTCTGGGTATGATAGTTGATCAACTACTATACCGTAGTGCCAAGGATCTTCATGCCCGCTACCTGAAGATAACTTGGCACAGGGATATGCTAACCAGTCCCGTGCATCTCCCTGGATCTTGCTACCAGAATCATCTTTTAGGAATTAACGAATCCCCATGCTATTTTGCTTCCAGTGAACTAATCACCGATACTTTTCTTGCTCACTTTTTCACAAAAAGGGCTGCCATTCCTGTGAAGTTCTTGGATCCTAAATGCCACGGTAATCATAATGGCTTTGACTGTGCGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

152

Amino Acids

17.66

Weight (kDa)

8.41

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 1 - 50 3.4e-09 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024676)

Species Orthologous Gene IDs
pyrus_communis pycom11g07220
rosa_roxburghii Rroxscaffold_1G00013000 Rroxscaffold_1G00013690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 454
AciI CCGC 1 cut(s) 223
AclWI GGATC 4 cut(s) 219, 289, 407, 420
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 39
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw21I GWGCWC 1 cut(s) 134
AlwI GGATC 4 cut(s) 219, 289, 407, 420
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 68
AspLEI GCGC 1 cut(s) 454
AsuHPI GGTGA 1 cut(s) 343
BamHI GGATCC 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 376
BciT130I CCWGG 1 cut(s) 279
BclI TGATCA 1 cut(s) 184
BfaI CTAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 279
BmiI GGNNCC 2 cut(s) 83, 414
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 280
BsaJI CCNNGG 3 cut(s) 207, 277, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 261, 339
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 3 cut(s) 207, 277, 424
BseLI CCNNNNNNNGG 1 cut(s) 59
BseNI ACTGG 2 cut(s) 261, 339
BseXI GCAGC 1 cut(s) 376
Bsh1236I CGCG 1 cut(s) 454
BsiHKAI GWGCWC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 4 cut(s) 184, 211, 281, 412
BspACI CCGC 1 cut(s) 223
BspFNI CGCG 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 83, 414
BspPI GGATC 4 cut(s) 219, 289, 407, 420
BsrI ACTGG 2 cut(s) 261, 339
BssECI CCNNGG 3 cut(s) 207, 277, 424
BssMI GATC 4 cut(s) 184, 211, 281, 412
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 3 cut(s) 200, 428, 449
BstC8I GCNNGC 1 cut(s) 223
BstDSI CCRYGG 1 cut(s) 424
BstFNI CGCG 1 cut(s) 454
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 4 cut(s) 187, 214, 284, 415
BstMBI GATC 4 cut(s) 184, 211, 281, 412
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 277
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 3 cut(s) 211, 281, 412
BstYI RGATCY 3 cut(s) 211, 281, 412
BtgI CCRYGG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 223
CfoI GCGC 1 cut(s) 454
Csp6I GTAC 1 cut(s) 165
CviAII CATG 3 cut(s) 40, 218, 324
CviJI RGCY 4 cut(s) 65, 112, 389, 441
CviKI_1 RGCY 4 cut(s) 65, 112, 389, 441
CviQI GTAC 1 cut(s) 165
DpnI GATC 4 cut(s) 186, 213, 283, 414
DpnII GATC 4 cut(s) 184, 211, 281, 412
Eco130I CCWWGG 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 3 cut(s) 43, 221, 327
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 249
FatI CATG 3 cut(s) 39, 217, 323
FauI CCCGC 1 cut(s) 230
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 1 cut(s) 74
GlaI GCGC 1 cut(s) 453
GluI GCNGC 1 cut(s) 390
HhaI GCGC 1 cut(s) 454
Hin1II CATG 3 cut(s) 43, 221, 327
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HinfI GANTC 2 cut(s) 295, 317
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 344
Hpy8I GTNNAC 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 3 cut(s) 200, 428, 449
HpyCH4V TGCA 1 cut(s) 271
Hsp92II CATG 3 cut(s) 43, 221, 327
HspAI GCGC 1 cut(s) 452
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 4 cut(s) 184, 211, 281, 412
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 9 cut(s) 155, 232, 242, 264, 274, 291, 305, 352, 411
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 146
MalI GATC 4 cut(s) 186, 213, 283, 414
MboI GATC 4 cut(s) 184, 211, 281, 412
MboII GAAGA 2 cut(s) 206, 244
MflI RGATCY 3 cut(s) 211, 281, 412
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 3 cut(s) 57, 68, 309
MnlI CCTC 2 cut(s) 72, 95
MseI TTAA 2 cut(s) 126, 312
MslI CAYNNNNRTG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 454
NdeII GATC 4 cut(s) 184, 211, 281, 412
NlaIII CATG 3 cut(s) 43, 221, 327
NlaIV GGNNCC 2 cut(s) 83, 414
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 43
PciI ACATGT 1 cut(s) 39
PfeI GAWTC 2 cut(s) 295, 317
PkrI GCNGC 1 cut(s) 391
PscI ACATGT 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 83, 414
PsuI RGATCY 3 cut(s) 211, 281, 412
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 2 cut(s) 126, 312
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 4 cut(s) 184, 211, 281, 412
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 1 cut(s) 134
SetI ASST 3 cut(s) 67, 87, 231
SfaNI GCATC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 398
Sse9I AATT 3 cut(s) 57, 68, 309
SsiI CCGC 1 cut(s) 223
SspI AATATT 1 cut(s) 14
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 200, 428, 449
TasI AATT 3 cut(s) 57, 68, 309
TfiI GAWTC 2 cut(s) 295, 317
Tru1I TTAA 2 cut(s) 126, 312
Tru9I TTAA 2 cut(s) 126, 312
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 346
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 43
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.