Rroxscaffold_1G00013690

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0024676
Physical Location & Seq
Forward (+)
16895279 .. 16902657
7379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013690.1

Sequence Viewer

Length: 537 bp
ATGGATTTACAATATTGTCGCACTAAAGAATGTAAAGACATGTTGTTATATCCCAAAATTGGAGCTGAATTCCTAGTGAGGAACCTCATACTGAAAACTGATGATAGTGAGCCTTCACGCTACTTTAAGTGCTCTCATTGGAAGTGTGACTTGTTCCATAATGGTACTCTGGTTTCAATTTCCCCTTGGGTTTATACTGAAACAAATTTGGCTGTCCCTCTCAATGGTTGCAGTGATCAACTATACCGTAGTGCCAAGGATCTTCATGCCCGCTACCTGAAGATAACTTGGCACAGGGATATGCTAACCAGTCCCGTGCATCTCCCTGGATCTTGCTACCAGAATCATCATCTTTTAGGAATTAACGAATCCCCATGCTATTTTGCTTCCAGTGAACTAATCACCGATACTTTTCTTGCTCACTTTTTCACAAAAAGGGCTGCCATTCCTGTGAAGTTCTTGGATCCTAAATGCCACGAACCTGGACATTCTTGCATGTACAGCTTATTAATGCATCCGATCAAAGAAGAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

178

Amino Acids

20.61

Weight (kDa)

7.14

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 1 - 50 3.8e-09 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024676)

Species Orthologous Gene IDs
pyrus_communis pycom11g07220
rosa_roxburghii Rroxscaffold_1G00013000 Rroxscaffold_1G00013690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 271
AclWI GGATC 4 cut(s) 267, 337, 458, 471
AcsI RAATTY 2 cut(s) 68, 205
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 2 cut(s) 166, 500
AfiI CCNNNNNNNGG 2 cut(s) 59, 224
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 1 cut(s) 177
AjnI CCWGG 2 cut(s) 325, 481
AluBI AGCT 3 cut(s) 65, 504, 534
AluI AGCT 3 cut(s) 65, 504, 534
Alw21I GWGCWC 1 cut(s) 134
AlwI GGATC 4 cut(s) 267, 337, 458, 471
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 2 cut(s) 68, 205
AseI ATTAAT 1 cut(s) 509
AsuHPI GGTGA 1 cut(s) 394
BaeI ACNNNNGTAYC 2 cut(s) 156, 189
BamHI GGATCC 1 cut(s) 463
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 427
BciT130I CCWGG 2 cut(s) 327, 483
BclI TGATCA 1 cut(s) 235
BfaI CTAG 2 cut(s) 74, 535
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 2 cut(s) 327, 483
BmiI GGNNCC 2 cut(s) 83, 465
BmrFI CCNGG 2 cut(s) 327, 483
BmsI GCATC 2 cut(s) 328, 523
BsaJI CCNNGG 3 cut(s) 185, 255, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 224
Bse1I ACTGG 2 cut(s) 309, 390
BseBI CCWGG 2 cut(s) 327, 483
BseDI CCNNGG 3 cut(s) 185, 255, 325
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 2 cut(s) 59, 224
BseNI ACTGG 2 cut(s) 309, 390
BseXI GCAGC 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 134
BslFI GGGAC 2 cut(s) 200, 297
BslI CCNNNNNNNGG 2 cut(s) 59, 224
BsmFI GGGAC 2 cut(s) 200, 297
Bsp1286I GDGCHC 1 cut(s) 134
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 5 cut(s) 235, 259, 329, 463, 519
BspACI CCGC 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 83, 465
BspPI GGATC 4 cut(s) 267, 337, 458, 471
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 2 cut(s) 309, 390
BssECI CCNNGG 3 cut(s) 185, 255, 325
BssMI GATC 5 cut(s) 235, 259, 329, 463, 519
BssT1I CCWWGG 2 cut(s) 185, 255
Bst2UI CCWGG 2 cut(s) 327, 483
Bst4CI ACNGT 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 271
BstF5I GGATG 1 cut(s) 514
BstKTI GATC 5 cut(s) 238, 262, 332, 466, 522
BstMBI GATC 5 cut(s) 235, 259, 329, 463, 519
BstMWI GCNNNNNNNGC 1 cut(s) 501
BstNI CCWGG 2 cut(s) 327, 483
BstNSI RCATGY 2 cut(s) 43, 499
BstSCI CCNGG 2 cut(s) 325, 481
BstV1I GCAGC 1 cut(s) 427
BstX2I RGATCY 3 cut(s) 259, 329, 463
BstXI CCANNNNNNTGG 1 cut(s) 482
BstYI RGATCY 3 cut(s) 259, 329, 463
BtsCI GGATG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 238, 397
Cac8I GCNNGC 1 cut(s) 271
Csp6I GTAC 2 cut(s) 165, 499
CviAII CATG 4 cut(s) 40, 266, 375, 496
CviJI RGCY 6 cut(s) 65, 112, 212, 440, 504, 534
CviKI_1 RGCY 6 cut(s) 65, 112, 212, 440, 504, 534
CviQI GTAC 2 cut(s) 165, 499
DpnI GATC 5 cut(s) 237, 261, 331, 465, 521
DpnII GATC 5 cut(s) 235, 259, 329, 463, 519
Eco130I CCWWGG 2 cut(s) 185, 255
Eco57I CTGAAG 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 325, 481
EcoT14I CCWWGG 2 cut(s) 185, 255
EcoT22I ATGCAT 1 cut(s) 516
ErhI CCWWGG 2 cut(s) 185, 255
FaeI CATG 4 cut(s) 43, 269, 378, 499
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 2 cut(s) 200, 297
FatI CATG 4 cut(s) 39, 265, 374, 495
FauI CCCGC 1 cut(s) 278
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 1 cut(s) 501
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 2 cut(s) 74, 535
GluI GCNGC 1 cut(s) 441
Hin1II CATG 4 cut(s) 43, 269, 378, 499
HinfI GANTC 2 cut(s) 343, 368
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 1 cut(s) 519
Hpy8I GTNNAC 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 231, 319, 495, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 501
Hsp92II CATG 4 cut(s) 43, 269, 378, 499
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 5 cut(s) 235, 259, 329, 463, 519
LmnI GCTCC 1 cut(s) 62
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 2 cut(s) 328, 523
MaeI CTAG 2 cut(s) 74, 535
MaeIII GTNAC 1 cut(s) 146
MalI GATC 5 cut(s) 237, 261, 331, 465, 521
MboI GATC 5 cut(s) 235, 259, 329, 463, 519
MboII GAAGA 2 cut(s) 254, 292
MflI RGATCY 3 cut(s) 259, 329, 463
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 5 cut(s) 57, 68, 177, 205, 360
MnlI CCTC 3 cut(s) 72, 95, 228
Mph1103I ATGCAT 1 cut(s) 516
MseI TTAA 3 cut(s) 126, 363, 509
MslI CAYNNNNRTG 1 cut(s) 449
MspR9I CCNGG 2 cut(s) 327, 483
MvaI CCWGG 2 cut(s) 327, 483
MwoI GCNNNNNNNGC 1 cut(s) 501
NdeII GATC 5 cut(s) 235, 259, 329, 463, 519
NlaIII CATG 4 cut(s) 43, 269, 378, 499
NlaIV GGNNCC 2 cut(s) 83, 465
NmuCI GTSAC 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 516
NspI RCATGY 2 cut(s) 43, 499
PciI ACATGT 1 cut(s) 39
PfeI GAWTC 2 cut(s) 343, 368
PkrI GCNGC 1 cut(s) 442
PscI ACATGT 1 cut(s) 39
PshBI ATTAAT 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 325, 481
PspGI CCWGG 2 cut(s) 325, 481
PspN4I GGNNCC 2 cut(s) 83, 465
PsuI RGATCY 3 cut(s) 259, 329, 463
RsaI GTAC 2 cut(s) 166, 500
RsaNI GTAC 2 cut(s) 165, 499
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 3 cut(s) 126, 363, 509
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 5 cut(s) 235, 259, 329, 463, 519
ScrFI CCNGG 2 cut(s) 327, 483
SduI GDGCHC 1 cut(s) 134
SetI ASST 6 cut(s) 67, 87, 279, 484, 506, 536
SfaNI GCATC 2 cut(s) 328, 523
SmiMI CAYNNNNRTG 1 cut(s) 449
Sse9I AATT 5 cut(s) 57, 68, 177, 205, 360
SsiI CCGC 1 cut(s) 271
SspI AATATT 1 cut(s) 14
SspMI CTAG 2 cut(s) 74, 535
StyD4I CCNGG 2 cut(s) 325, 481
StyI CCWWGG 2 cut(s) 185, 255
TaaI ACNGT 1 cut(s) 248
TasI AATT 5 cut(s) 57, 68, 177, 205, 360
TatI WGTACW 1 cut(s) 498
TfiI GAWTC 2 cut(s) 343, 368
Tru1I TTAA 3 cut(s) 126, 363, 509
Tru9I TTAA 3 cut(s) 126, 363, 509
TscAI CASTG 2 cut(s) 238, 397
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 2 cut(s) 238, 397
VspI ATTAAT 1 cut(s) 509
XapI RAATTY 2 cut(s) 68, 205
XceI RCATGY 2 cut(s) 43, 499
XspI CTAG 2 cut(s) 74, 535
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.