pycom11g07750

Rab subfamily of small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0021278
Physical Location & Seq
Forward (+)
5924669 .. 5924968
300 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGATGACTGGAAACAAGTCTGACTTGATCAATCTCCGAGCTGTTTCAGAGGATGATGGTCAGTCCTTGGCTGAGAGGGAAGGTCTCTCATTTCTCGAGACATCAGCACTGGAAGCAACCAACATTGAGAAGGCATTTCAAACTATTCTAACCGATCGATCTACCATATTGTCAGCAAAAAAGCACTGGCAGCTCAAGAAGCAGTCTCAACTACCCTACCTGGTCAAGGAACCACCATCGACGTTAGTGATGCTTCTGGGAATACAAACAAGAGAGGTTGCTGCTCGACATAAAAGATGA

Protein Analysis

100

Amino Acids

11.12

Weight (kDa)

9.1

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 1 - 51 8.9e-12 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021278)

Species Orthologous Gene IDs
pyrus_communis pycom11g07750
rosa_chinensis RchiOBHm_Chr5g0042041
rosa_laevigata RLG00000010213
rosa_samantha Rh5BG288300 Rh5DG297500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 2 cut(s) 41, 193
AluI AGCT 2 cut(s) 41, 193
Alw26I GTCTC 3 cut(s) 89, 92, 210
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 190, 281
AvaI CYCGRG 1 cut(s) 95
BbvI GCAGC 2 cut(s) 202, 268
BccI CCATC 2 cut(s) 50, 244
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 3 cut(s) 89, 92, 210
BisI GCNGC 2 cut(s) 191, 282
BlsI GCNGC 2 cut(s) 192, 283
Bme1390I CCNGG 1 cut(s) 221
BmeT110I CYCGRG 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 179
Bsa29I ATCGAT 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 3 cut(s) 13, 114, 191
BseBI CCWGG 1 cut(s) 221
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 3 cut(s) 13, 114, 191
BseXI GCAGC 2 cut(s) 202, 268
Bsh1285I CGRYCG 1 cut(s) 157
BshVI ATCGAT 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 3 cut(s) 89, 92, 210
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 3 cut(s) 27, 154, 158
BspCNI CTCAG 1 cut(s) 64
BspDI ATCGAT 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 231
BspTNI GGTCTC 1 cut(s) 89
BsrI ACTGG 3 cut(s) 13, 114, 191
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 3 cut(s) 27, 154, 158
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 72
BstENI CCTNNNNNAGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 3 cut(s) 30, 157, 161
BstMAI GTCTC 3 cut(s) 89, 92, 210
BstMBI GATC 3 cut(s) 27, 154, 158
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 3 cut(s) 113, 190, 199
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 202, 268
Bsu15I ATCGAT 1 cut(s) 157
BsuTUI ATCGAT 1 cut(s) 157
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 2 cut(s) 107, 184
ClaI ATCGAT 1 cut(s) 157
CsiI ACCWGGT 1 cut(s) 219
CviJI RGCY 3 cut(s) 41, 71, 193
CviKI_1 RGCY 3 cut(s) 41, 71, 193
DdeI CTNAG 1 cut(s) 72
DpnI GATC 3 cut(s) 29, 156, 160
DpnII GATC 3 cut(s) 27, 154, 158
Eco130I CCWWGG 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaiI YATR 2 cut(s) 167, 291
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 191, 282
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 191, 282
GluI GCNGC 2 cut(s) 191, 282
Hpy188I TCNGA 3 cut(s) 22, 38, 49
Hpy188III TCNNGA 3 cut(s) 95, 97, 196
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 74, 124
HpyCH4IV ACGT 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 190, 199
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 242
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 3 cut(s) 27, 154, 158
LpnPI CCDG 5 cut(s) 95, 172, 206, 233, 242
Lsp1109I GCAGC 2 cut(s) 202, 268
LweI GCATC 1 cut(s) 240
MabI ACCWGGT 1 cut(s) 219
MaeII ACGT 1 cut(s) 242
MalI GATC 3 cut(s) 29, 156, 160
MboI GATC 3 cut(s) 27, 154, 158
MnlI CCTC 3 cut(s) 43, 69, 268
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 113, 190, 199
NdeII GATC 3 cut(s) 27, 154, 158
NlaIV GGNNCC 1 cut(s) 231
PaeR7I CTCGAG 1 cut(s) 95
PkrI GCNGC 2 cut(s) 192, 283
Ple19I CGATCG 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 231
PvuI CGATCG 1 cut(s) 157
SatI GCNGC 2 cut(s) 191, 282
Sau3AI GATC 3 cut(s) 27, 154, 158
ScrFI CCNGG 1 cut(s) 221
SetI ASST 6 cut(s) 43, 85, 195, 222, 245, 279
SexAI ACCWGGT 1 cut(s) 219
SfaNI GCATC 1 cut(s) 240
Sfr274I CTCGAG 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 95, 194
SmoI CTYRAG 2 cut(s) 95, 194
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 66
TaiI ACGT 1 cut(s) 245
TaqI TCGA 4 cut(s) 96, 157, 239, 286
TscAI CASTG 2 cut(s) 114, 191
TseI GCWGC 2 cut(s) 190, 281
TspRI CASTG 2 cut(s) 114, 191
XagI CCTNNNNNAGG 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.