Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0021278

Physical Location & Seq

Genomic Coordinates Forward (+)

37468856 .. 37482308

Gene Structure 13453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG297500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTGGAAATAAGTCTGACTTGAACCATCTTAGAGCTGTTTCAGAGGATGATGGTCAGGCCTTGGCTGAGAGGGAAGGTCTCTCATTTCTTGAGACATCAGCACTCGAAGCAACCAATATTGAGAAGGCATTTCAAACTATTTTAACAGAGATCTACCATATCATTAGCAAAAAGGCACTGGCAGCTCAGGAAGCAGTCGCGAGCACTACCCTTTCTAGTCAAGGAACTACTATCAATGTTGGTGATGCTTCTGGGAATACGAAAAGAGACAATGTCTATTGGAAGCATGTTGTGCACCGCATTGTAGCATGTAAGGTTGTACTGCATGGACATGCTGAGTTTGAGGCAAGTGATGTTATCGTAAAGAACACTAAGCCTAGACGCTTTACAGAAGAATGCACCAATTGTGAAGAACAGATTGCTGCTGTTAGATTTGTAGCACCATCAAGGTGGAAGCAGCTTCTCAGGATTATGCTCATGTCAAAGCGTCCTAAAATCCCACCTTCTGGCCCAAGCCACAGGACCAACAAGACACCTAATTCCTCAAGAGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009504 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

186

Amino Acids

20.64

Weight (kDa)

9.01

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	2 - 53	4.8e-12	Ras family
Hexapep_UGP3_C	PF25441	88 - 123	2.8e-09	UGP3-like, C-terminal hexapeptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021278)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g07750
rosa_chinensis	RchiOBHm_Chr5g0042041
rosa_laevigata	RLG00000010213
rosa_samantha	Rh5BG288300 Rh5DG297500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccII	CGCG	1 cut(s)	203
AciI	CCGC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	509
AgsI	TTSAA	2 cut(s)	25, 137
AluBI	AGCT	3 cut(s)	38, 188, 463
AluI	AGCT	3 cut(s)	38, 188, 463
Alw21I	GWGCWC	2 cut(s)	209, 300
Alw26I	GTCTC	3 cut(s)	86, 89, 264
Alw44I	GTGCAC	1 cut(s)	296
AoxI	GGCC	2 cut(s)	60, 511
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	3 cut(s)	185, 425, 460
AspS9I	GGNCC	2 cut(s)	512, 525
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	300
Bbv12I	GWGCWC	2 cut(s)	209, 300
BbvI	GCAGC	3 cut(s)	197, 412, 472
BccI	CCATC	3 cut(s)	36, 47, 454
BcoDI	GTCTC	3 cut(s)	86, 89, 264
BfaI	CTAG	2 cut(s)	219, 381
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	3 cut(s)	186, 426, 461
BlsI	GCNGC	3 cut(s)	187, 427, 462
Bme18I	GGWCC	1 cut(s)	525
BmgT120I	GGNCC	2 cut(s)	512, 525
BmsI	GCATC	1 cut(s)	238
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	2 cut(s)	113, 532
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMII	CTCAG	4 cut(s)	60, 203, 330, 481
BseNI	ACTGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	197, 412, 472
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	2 cut(s)	62, 513
BsiHKAI	GWGCWC	2 cut(s)	209, 300
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	3 cut(s)	86, 89, 264
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	62, 513
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	209, 300
Bsp143I	GATC	1 cut(s)	153
Bsp68I	TCGCGA	1 cut(s)	203
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	2 cut(s)	62, 513
BspCNI	CTCAG	4 cut(s)	61, 202, 331, 480
BspFNI	CGCG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	6 cut(s)	32, 69, 189, 339, 375, 467
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	3 cut(s)	86, 89, 264
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 185, 194, 295
BstNSI	RCATGY	3 cut(s)	293, 315, 338
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	197, 412, 472
BstX2I	RGATCY	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	62, 513
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	179
BtuMI	TCGCGA	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	512, 525
CseI	GACGC	2 cut(s)	393, 479
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	5 cut(s)	290, 312, 329, 335, 481
CviJI	RGCY	9 cut(s)	5, 38, 62, 68, 188, 379, 463, 513, 519
CviKI_1	RGCY	9 cut(s)	5, 38, 62, 68, 188, 379, 463, 513, 519
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	6 cut(s)	32, 69, 189, 339, 375, 467
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	525
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	5 cut(s)	293, 315, 332, 338, 484
FaiI	YATR	7 cut(s)	162, 291, 313, 330, 336, 476, 482
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	5 cut(s)	289, 311, 328, 334, 480
Fnu4HI	GCNGC	3 cut(s)	186, 426, 461
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	186, 426, 461
FspBI	CTAG	2 cut(s)	219, 381
GluI	GCNGC	3 cut(s)	186, 426, 461
HaeIII	GGCC	2 cut(s)	62, 513
HgaI	GACGC	2 cut(s)	393, 479
Hin1II	CATG	5 cut(s)	293, 315, 332, 338, 484
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	19, 46
Hpy188III	TCNNGA	5 cut(s)	92, 191, 202, 469, 549
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	3 cut(s)	71, 121, 516
HpyCH4V	TGCA	3 cut(s)	298, 328, 402
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 185, 194, 295
HpyF3I	CTNAG	6 cut(s)	32, 69, 189, 339, 375, 467
Hsp92II	CATG	5 cut(s)	293, 315, 332, 338, 484
Kzo9I	GATC	1 cut(s)	153
LpnPI	CCDG	7 cut(s)	44, 167, 176, 240, 454, 495, 508
Lsp1109I	GCAGC	3 cut(s)	197, 412, 472
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	219, 381
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	407, 425
MfeI	CAATTG	1 cut(s)	406
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	209, 300
MluCI	AATT	2 cut(s)	406, 541
MnlI	CCTC	4 cut(s)	40, 66, 340, 556
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	2 cut(s)	333, 451
MunI	CAATTG	1 cut(s)	406
Mva1269I	GAATGC	1 cut(s)	404
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	110, 185, 194, 295
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	5 cut(s)	293, 315, 332, 338, 484
NruI	TCGCGA	1 cut(s)	203
NspI	RCATGY	3 cut(s)	293, 315, 338
PceI	AGGCCT	1 cut(s)	62
PctI	GAATGC	1 cut(s)	404
PflFI	GACNNNGTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	187, 427, 462
PspPI	GGNCC	2 cut(s)	512, 525
PsuI	RGATCY	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	275
RruI	TCGCGA	1 cut(s)	203
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	2 cut(s)	333, 451
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	3 cut(s)	186, 426, 461
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	512, 525
SduI	GDGCHC	2 cut(s)	209, 300
SetI	ASST	8 cut(s)	40, 82, 190, 321, 455, 465, 508, 541
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	525
SmiMI	CAYNNNNRTG	2 cut(s)	333, 451
SmlI	CTYRAG	2 cut(s)	92, 547
SmoI	CTYRAG	2 cut(s)	92, 547
Sse9I	AATT	2 cut(s)	406, 541
SseBI	AGGCCT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	301
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	2 cut(s)	219, 381
StuI	AGGCCT	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	63
TaqI	TCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	406, 541
TatI	WGTACW	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	3 cut(s)	185, 425, 460
TspRI	CASTG	1 cut(s)	186
Tth111I	GACNNNGTC	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	509
VneI	GTGCAC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	525
XceI	RCATGY	3 cut(s)	293, 315, 338
XspI	CTAG	2 cut(s)	219, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.