Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0021278

Physical Location & Seq

Genomic Coordinates Forward (+)

36688559 .. 36703360

Gene Structure 14802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG288300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTTCTTGTTGACGCGAGCTGGGTTCGAATCTCTCTTTGTTTTACTGGGTCTTGTTGGATTTGCGCTCCAATGCTTTGTTGTTCTTGCATGGCCTCTCTTTGCTCTGGTCTATCCTCTGTATTCTTCCATTAGAGCAATCGAGGCAAATTCCATTACAGATACTCACAAGATAAATACGTATTGGGTCATCTTCTCATTGATCTTGCTATTTGTCATTGAACATGCTTTTATGAAGCTCCTTGAATGGTTCACCAGAAATGAGTTCTGCTTGGAGTCCAAGTCCACCATCGGCGTCGAATTCGCCACCAGAACTCTTCAGGTTGAAGGAAAAACTGTCAAGGCACAGATCTGGGATACAGCAGGGCAGGAGCGATATCGTGCTATCACCAATGCATGCGATAGAGGGGCAGGTGCTCTCCTTGTCTATGACATAACTAAGCGCCCAACATTTGATAATGTCCAAAGGTGGCTCCATGAATTGAGGGACCATGCGGATTCTAATATTGTCATCATGATGGCTGGAAATAAGTCTGACTTGAACCATCTTAGAGCTGTTTCAGAGGATGATGGTCAGGCCTTGGCTGAGAGGGAAGGTCTCTCATTTCTTGAGACATCAGCACTCGAAGCAACCAATATTGAGAAGGCATTTCAAACTATTTTAACAGAGATCTACCATATCATTAGCAAAAAGGCACTGGCAGCTCAGGAAGCAGTCGCGAGCACTACCCTTTCTAGTCAAGGAACTACTATCAATGTTGGTGATGCTTCTGGGAATACGAAAAGAGGTTGCTGCTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009504 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0030054 GO:0031410 GO:0031982 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04961 ko04962 ko04972 map04144 map04152 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

267

Amino Acids

29.71

Weight (kDa)

5.72

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	39 - 84	2.3e-06	TB2/DP1, HVA22 family
Ras	PF00071	80 - 225	3e-48	Ras family
Roc	PF08477	80 - 179	1.2e-19	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021278)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g07750
rosa_chinensis	RchiOBHm_Chr5g0042041
rosa_laevigata	RLG00000010213
rosa_samantha	Rh5BG288300 Rh5DG297500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	401
AccII	CGCG	2 cut(s)	16, 719
AciI	CCGC	1 cut(s)	494
AcsI	RAATTY	2 cut(s)	148, 299
AcuI	CTGAAG	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	294
AgsI	TTSAA	5 cut(s)	221, 245, 326, 541, 653
AluBI	AGCT	4 cut(s)	20, 238, 554, 704
AluI	AGCT	4 cut(s)	20, 238, 554, 704
Alw21I	GWGCWC	2 cut(s)	418, 725
Alw26I	GTCTC	2 cut(s)	602, 605
AoxI	GGCC	2 cut(s)	92, 576
ApeKI	GCWGC	2 cut(s)	701, 792
ApoI	RAATTY	2 cut(s)	148, 299
AspLEI	GCGC	2 cut(s)	67, 444
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	3 cut(s)	244, 379, 773
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	487
Bbv12I	GWGCWC	2 cut(s)	418, 725
BbvI	GCAGC	2 cut(s)	713, 779
BccI	CCATC	4 cut(s)	296, 511, 552, 563
BciVI	GTATCC	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	602, 605
BfaI	CTAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	445
BfuAI	ACCTGC	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	349
BglII	AGATCT	2 cut(s)	348, 669
BisI	GCNGC	2 cut(s)	702, 793
BlsI	GCNGC	2 cut(s)	703, 794
Bme18I	GGWCC	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	2 cut(s)	473, 488
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	754
BmuI	ACTGGG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu14I	TTCGAA	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	629
BsaAI	YACGTR	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bse1I	ACTGG	2 cut(s)	51, 702
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	1 cut(s)	571
BseMII	CTCAG	2 cut(s)	576, 719
BseNI	ACTGG	2 cut(s)	51, 702
BseXI	GCAGC	2 cut(s)	713, 779
BseYI	CCCAGC	1 cut(s)	20
Bsh1236I	CGCG	2 cut(s)	16, 719
BshFI	GGCC	2 cut(s)	94, 578
BsiHKAI	GWGCWC	2 cut(s)	418, 725
BslFI	GGGAC	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	602, 605
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	94, 578
Bso31I	GGTCTC	1 cut(s)	602
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	418, 725
Bsp143I	GATC	3 cut(s)	201, 348, 669
Bsp68I	TCGCGA	1 cut(s)	719
BspACI	CCGC	1 cut(s)	494
BspANI	GGCC	2 cut(s)	94, 578
BspCNI	CTCAG	2 cut(s)	577, 718
BspFNI	CGCG	2 cut(s)	16, 719
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	2 cut(s)	473, 488
BspMI	ACCTGC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	602
BsrI	ACTGG	2 cut(s)	51, 702
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	3 cut(s)	201, 348, 669
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	18, 397, 721
BstDEI	CTNAG	4 cut(s)	438, 548, 585, 705
BstF5I	GGATG	1 cut(s)	571
BstFNI	CGCG	2 cut(s)	16, 719
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	2 cut(s)	67, 444
BstKTI	GATC	3 cut(s)	204, 351, 672
BstMAI	GTCTC	2 cut(s)	602, 605
BstMBI	GATC	3 cut(s)	201, 348, 669
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 626, 701, 710
BstNSI	RCATGY	2 cut(s)	227, 399
BstSNI	TACGTA	1 cut(s)	180
BstUI	CGCG	2 cut(s)	16, 719
BstV1I	GCAGC	2 cut(s)	713, 779
BstX2I	RGATCY	2 cut(s)	348, 669
BstYI	RGATCY	2 cut(s)	348, 669
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	94, 578
BtsCI	GGATG	1 cut(s)	571
BtsIMutI	CAGTG	1 cut(s)	695
BtuMI	TCGCGA	1 cut(s)	719
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	3 cut(s)	18, 397, 721
CciI	TCATGA	1 cut(s)	513
CfoI	GCGC	2 cut(s)	67, 444
Cfr13I	GGNCC	1 cut(s)	487
CseI	GACGC	2 cut(s)	22, 283
CviAII	CATG	6 cut(s)	90, 224, 396, 476, 491, 514
CviJI	RGCY	9 cut(s)	20, 94, 238, 472, 521, 554, 578, 584, 704
CviKI_1	RGCY	9 cut(s)	20, 94, 238, 472, 521, 554, 578, 584, 704
DdeI	CTNAG	4 cut(s)	438, 548, 585, 705
DpnI	GATC	3 cut(s)	203, 350, 671
DpnII	GATC	3 cut(s)	201, 348, 669
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco105I	TACGTA	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	579
Eco147I	AGGCCT	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	602
Eco32I	GATATC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	299
EcoRV	GATATC	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	579
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	6 cut(s)	93, 227, 399, 479, 494, 517
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	6 cut(s)	89, 223, 395, 475, 490, 513
Fnu4HI	GCNGC	2 cut(s)	702, 793
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	2 cut(s)	702, 793
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	2 cut(s)	66, 443
GluI	GCNGC	2 cut(s)	702, 793
GsaI	CCCAGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	445
HaeIII	GGCC	2 cut(s)	94, 578
HgaI	GACGC	2 cut(s)	22, 283
HhaI	GCGC	2 cut(s)	67, 444
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	6 cut(s)	93, 227, 399, 479, 494, 517
Hin6I	GCGC	2 cut(s)	65, 442
HinP1I	GCGC	2 cut(s)	65, 442
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	29, 275, 497
HphI	GGTGA	3 cut(s)	244, 379, 773
Hpy166II	GTNNAC	3 cut(s)	12, 252, 285
Hpy188I	TCNGA	2 cut(s)	535, 562
Hpy188III	TCNNGA	4 cut(s)	514, 608, 707, 718
Hpy8I	GTNNAC	3 cut(s)	12, 252, 285
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	320, 587, 637
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	89, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 626, 701, 710
HpyF3I	CTNAG	4 cut(s)	438, 548, 585, 705
HpySE526I	ACGT	1 cut(s)	179
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	6 cut(s)	93, 227, 399, 479, 494, 517
HspAI	GCGC	2 cut(s)	65, 442
Kzo9I	GATC	3 cut(s)	201, 348, 669
LmnI	GCTCC	4 cut(s)	72, 243, 370, 477
Lsp1109I	GCAGC	2 cut(s)	713, 779
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	1 cut(s)	179
MalI	GATC	3 cut(s)	203, 350, 671
MboI	GATC	3 cut(s)	201, 348, 669
MboII	GAAGA	3 cut(s)	117, 184, 308
MflI	RGATCY	2 cut(s)	348, 669
MhlI	GDGCHC	2 cut(s)	418, 725
MluCI	AATT	3 cut(s)	148, 299, 479
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	8 cut(s)	105, 126, 136, 398, 477, 556, 582, 779
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	1 cut(s)	662
MslI	CAYNNNNRTG	1 cut(s)	515
MvnI	CGCG	2 cut(s)	16, 719
MwoI	GCNNNNNNNGC	4 cut(s)	143, 626, 701, 710
NdeII	GATC	3 cut(s)	201, 348, 669
NlaIII	CATG	6 cut(s)	93, 227, 399, 479, 494, 517
NlaIV	GGNNCC	2 cut(s)	473, 488
NruI	TCGCGA	1 cut(s)	719
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	2 cut(s)	227, 399
NspV	TTCGAA	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	399
PagI	TCATGA	1 cut(s)	513
PaqCI	CACCTGC	1 cut(s)	401
PceI	AGGCCT	1 cut(s)	578
PfeI	GAWTC	2 cut(s)	29, 497
PkrI	GCNGC	2 cut(s)	703, 794
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	473, 488
PspPI	GGNCC	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	348, 669
RruI	TCGCGA	1 cut(s)	719
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	2 cut(s)	702, 793
Sau3AI	GATC	3 cut(s)	201, 348, 669
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	418, 725
SfaNI	GCATC	1 cut(s)	754
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SnaBI	TACGTA	1 cut(s)	180
SphI	GCATGC	1 cut(s)	399
Sse9I	AATT	3 cut(s)	148, 299, 479
SseBI	AGGCCT	1 cut(s)	578
SsiI	CCGC	1 cut(s)	494
SspI	AATATT	2 cut(s)	505, 637
SspMI	CTAG	1 cut(s)	735
StuI	AGGCCT	1 cut(s)	578
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	4 cut(s)	27, 141, 297, 624
TasI	AATT	3 cut(s)	148, 299, 479
TfiI	GAWTC	2 cut(s)	29, 497
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	1 cut(s)	702
TseI	GCWGC	2 cut(s)	701, 792
TspDTI	ATGAA	2 cut(s)	248, 492
TspRI	CASTG	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	2 cut(s)	148, 299
XceI	RCATGY	2 cut(s)	227, 399
XspI	CTAG	1 cut(s)	735
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.