Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0024343

Physical Location & Seq

Genomic Coordinates Forward (+)

8320544 .. 8322335

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g09920.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCATTTGCACAACAACAGCGTGAGGTACGCTCATGCCAGAGCAGTCGAAACTGCACGTTCAGTTTCTAAAGTTACTGTGGACTTTTTCAAAACTCTAGACTTGCATGCATCCAATCTGACCCAAATTGTGGAAGAAGCACAAACTGTCAACGACAAGAAATTGTCTCAACTTGAAGAGAAGTTTGAGGAGTGTGCTGCTAATGAAGAAAGGCAATTGCTAGAGAAAGTGGCAGAGCTGCTGGCAAGTTCAAATGCCAGGAAGAAAAAACTGGTACAAACTGCTGTAAATGATCTTCGAGAGAGTGCAACAAGCAGAACCAACAAAATACAGAAAGAAATGTCAACCATGCAAGATTCAACTTCGTCTATCAAAACCAAATGGACATTTCACATGGAAAAAACAGAATCCCATTACCTTGAAGACACAACGGCTGTGGAATGTGGAAAGAAAGACATGGAGGAGGTTCTACAGAATTGTTTGAAGCAGGCATCAGTGGGTGCAGAACAGTGGAAGAAAGCTCAGGAGTCCTTGCTCAATCTAGAAAAGAGAAATGTTGCTTCTGTGGACTCCATTGTTAGGAGGGGAACGGAAGTCAATCAAACCTTACGTGATAGGTTCTCCTCGTCTGTGTCAGCTGCACTAGAAGATGTAGACATCGCAGACAAGAATCTCCTTTCCTCCATAGATCATTCATTACAACTTGACCACGAGGCATGTGGAAATCTAAATTCAATGATTGTTCCATGTTGCGGGGATCTGAGAGAACTAAAGGGAGGTCACTACCACAATATTGTTGAAATCACCGAAAATGCAGGAAAATTTCTTCTGGATGAATACGTGGTGGACGAACCATCATGTTCCACGCCAAGAAAGAGGTCATTCAATCTTCCAAGCGTTGCATCCATTGAAGAACTCAGGACTCCAGCTTTTGAGGAATTGTTGAGGTTATTCTGGGATGAAAGATCGGCGAAACAGCAAGCAAATGGAGACCTAAAACACGTCACAGGGGCGTACGAGGCTGCTCAATCCATTAGAGACTCCAGAGTTCCTCTCACTGCTATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008574 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0030865 GO:0031122 GO:0032502 GO:0032506 GO:0032989 GO:0032991 GO:0040007 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051301 GO:0060560 GO:0061640 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902410 GO:1902850 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

357

Amino Acids

40.02

Weight (kDa)

5.66

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024343)

Species	Orthologous Gene IDs
malus_domestica	MD03G1105800.v1.1
pyrus_communis	pycom11g09920
rosa_multiflora	Rmu_sc0017669.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	654
AciI	CCGC	1 cut(s)	753
AclWI	GGATC	1 cut(s)	765
AcsI	RAATTY	2 cut(s)	730, 821
AfaI	GTAC	3 cut(s)	29, 276, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	130, 579, 752
AflIII	ACRYGT	1 cut(s)	1000
AjiI	CACGTC	1 cut(s)	1003
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	4 cut(s)	238, 521, 638, 929
AluI	AGCT	4 cut(s)	238, 521, 638, 929
Alw26I	GTCTC	3 cut(s)	171, 984, 1032
AlwI	GGATC	1 cut(s)	765
ApeKI	GCWGC	4 cut(s)	197, 238, 638, 1022
ApoI	RAATTY	2 cut(s)	730, 821
AsuHPI	GGTGA	1 cut(s)	796
BarI	GAAGNNNNNNTAC	2 cut(s)	279, 311
BauI	CACGAG	1 cut(s)	710
BbsI	GAAGAC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	184, 225, 625, 1009
BccI	CCATC	1 cut(s)	862
BceAI	ACGGC	1 cut(s)	447
BciT130I	CCWGG	1 cut(s)	259
BcoDI	GTCTC	3 cut(s)	171, 984, 1032
BfaI	CTAG	4 cut(s)	98, 221, 542, 644
BfmI	CTRYAG	1 cut(s)	470
BisI	GCNGC	4 cut(s)	198, 239, 639, 1023
BlsI	GCNGC	4 cut(s)	199, 240, 640, 1024
Bme1390I	CCNGG	1 cut(s)	259
BmgBI	CACGTC	1 cut(s)	1003
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	3 cut(s)	119, 500, 911
BpiI	GAAGAC	1 cut(s)	429
BplI	GAGNNNNNCTC	4 cut(s)	16, 48, 1038, 1070
BpmI	CTGGAG	2 cut(s)	909, 1027
Bpu10I	CCTNAGC	1 cut(s)	522
BsaAI	YACGTR	2 cut(s)	611, 841
BsaI	GGTCTC	1 cut(s)	984
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 579, 752
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	259
BseGI	GGATG	4 cut(s)	110, 838, 902, 964
BseLI	CCNNNNNNNGG	3 cut(s)	130, 579, 752
BseMII	CTCAG	3 cut(s)	536, 752, 931
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	3 cut(s)	203, 476, 613
BseXI	GCAGC	4 cut(s)	184, 225, 625, 1009
BsgI	GTGCAG	3 cut(s)	39, 522, 624
BsiWI	CGTACG	1 cut(s)	1014
BslI	CCNNNNNNNGG	3 cut(s)	130, 579, 752
BsmAI	GTCTC	3 cut(s)	171, 984, 1032
Bso31I	GGTCTC	1 cut(s)	984
Bsp143I	GATC	4 cut(s)	292, 688, 757, 965
BspACI	CCGC	1 cut(s)	753
BspCNI	CTCAG	3 cut(s)	535, 753, 930
BspPI	GGATC	1 cut(s)	765
BspTNI	GGTCTC	1 cut(s)	984
BsrI	ACTGG	1 cut(s)	276
BssMI	GATC	4 cut(s)	292, 688, 757, 965
BssSI	CACGAG	1 cut(s)	710
Bst2BI	CACGAG	1 cut(s)	710
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	79, 148, 510
Bst6I	CTCTTC	1 cut(s)	171
BstBAI	YACGTR	2 cut(s)	611, 841
BstC8I	GCNNGC	4 cut(s)	108, 243, 489, 981
BstDEI	CTNAG	3 cut(s)	522, 761, 917
BstF5I	GGATG	4 cut(s)	110, 838, 902, 964
BstKTI	GATC	4 cut(s)	295, 691, 760, 968
BstMAI	GTCTC	3 cut(s)	171, 984, 1032
BstMBI	GATC	4 cut(s)	292, 688, 757, 965
BstMWI	GCNNNNNNNGC	1 cut(s)	1019
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	2 cut(s)	110, 720
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	470
BstV1I	GCAGC	4 cut(s)	184, 225, 625, 1009
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BtgZI	GCGATG	1 cut(s)	643
BtrI	CACGTC	1 cut(s)	1003
BtsCI	GGATG	4 cut(s)	110, 838, 902, 964
BtsI	GCAGTG	1 cut(s)	1056
BtsIMutI	CAGTG	3 cut(s)	501, 515, 1056
Cac8I	GCNNGC	4 cut(s)	108, 243, 489, 981
Csp6I	GTAC	3 cut(s)	28, 275, 1015
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	8 cut(s)	35, 107, 349, 394, 457, 717, 747, 858
CviJI	RGCY	6 cut(s)	238, 434, 521, 638, 929, 1022
CviKI_1	RGCY	6 cut(s)	238, 434, 521, 638, 929, 1022
CviQI	GTAC	3 cut(s)	28, 275, 1015
DdeI	CTNAG	3 cut(s)	522, 761, 917
DpnI	GATC	4 cut(s)	294, 690, 759, 967
DpnII	GATC	4 cut(s)	292, 688, 757, 965
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	984
EcoRII	CCWGG	1 cut(s)	257
EcoT22I	ATGCAT	2 cut(s)	6, 112
FaeI	CATG	8 cut(s)	38, 110, 352, 397, 460, 720, 750, 861
FaiI	YATR	9 cut(s)	36, 108, 350, 395, 458, 686, 718, 748, 859
FatI	CATG	8 cut(s)	34, 106, 348, 393, 456, 716, 746, 857
FauI	CCCGC	1 cut(s)	746
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	198, 239, 639, 1023
FokI	GGATG	4 cut(s)	97, 845, 889, 971
Fsp4HI	GCNGC	4 cut(s)	198, 239, 639, 1023
FspBI	CTAG	4 cut(s)	98, 221, 542, 644
GluI	GCNGC	4 cut(s)	198, 239, 639, 1023
GsuI	CTGGAG	2 cut(s)	909, 1027
Hin1II	CATG	8 cut(s)	38, 110, 352, 397, 460, 720, 750, 861
HincII	GTYRAC	2 cut(s)	151, 345
HindII	GTYRAC	2 cut(s)	151, 345
HinfI	GANTC	7 cut(s)	356, 407, 527, 569, 670, 922, 1040
HphI	GGTGA	1 cut(s)	796
Hpy166II	GTNNAC	6 cut(s)	82, 151, 345, 568, 655, 847
Hpy188I	TCNGA	2 cut(s)	120, 762
Hpy188III	TCNNGA	7 cut(s)	98, 299, 524, 542, 830, 919, 1044
Hpy8I	GTNNAC	6 cut(s)	82, 151, 345, 568, 655, 847
HpyCH4III	ACNGT	3 cut(s)	79, 148, 510
HpyCH4IV	ACGT	4 cut(s)	58, 610, 840, 1002
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1019
HpyF3I	CTNAG	3 cut(s)	522, 761, 917
HpySE526I	ACGT	4 cut(s)	58, 610, 840, 1002
Hsp92II	CATG	8 cut(s)	38, 110, 352, 397, 460, 720, 750, 861
Kzo9I	GATC	4 cut(s)	292, 688, 757, 965
Lsp1109I	GCAGC	4 cut(s)	184, 225, 625, 1009
LweI	GCATC	3 cut(s)	119, 500, 911
MaeI	CTAG	4 cut(s)	98, 221, 542, 644
MaeII	ACGT	4 cut(s)	58, 610, 840, 1002
MaeIII	GTNAC	3 cut(s)	73, 779, 1003
MalI	GATC	4 cut(s)	294, 690, 759, 967
MboI	GATC	4 cut(s)	292, 688, 757, 965
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	1 cut(s)	757
MluCI	AATT	7 cut(s)	126, 161, 215, 475, 730, 821, 938
MlyI	GAGTC	4 cut(s)	536, 563, 916, 1034
Mph1103I	ATGCAT	2 cut(s)	6, 112
MseI	TTAA	1 cut(s)	1065
MspA1I	CMGCKG	1 cut(s)	638
MspR9I	CCNGG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	1019
NdeII	GATC	4 cut(s)	292, 688, 757, 965
NlaIII	CATG	8 cut(s)	38, 110, 352, 397, 460, 720, 750, 861
NmuCI	GTSAC	2 cut(s)	779, 1003
NsiI	ATGCAT	2 cut(s)	6, 112
NspI	RCATGY	2 cut(s)	110, 720
PaeI	GCATGC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	846
PfeI	GAWTC	3 cut(s)	356, 407, 670
Pfl23II	CGTACG	1 cut(s)	1014
PflMI	CCANNNNNTGG	1 cut(s)	130
PkrI	GCNGC	4 cut(s)	199, 240, 640, 1024
PleI	GAGTC	4 cut(s)	535, 563, 916, 1034
PpsI	GAGTC	4 cut(s)	535, 563, 916, 1034
Ppu21I	YACGTR	2 cut(s)	611, 841
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspLI	CGTACG	1 cut(s)	1014
PsuI	RGATCY	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	3 cut(s)	29, 276, 1016
RsaNI	GTAC	3 cut(s)	28, 275, 1015
SaqAI	TTAA	1 cut(s)	1065
SatI	GCNGC	4 cut(s)	198, 239, 639, 1023
Sau3AI	GATC	4 cut(s)	292, 688, 757, 965
SchI	GAGTC	4 cut(s)	536, 563, 916, 1034
ScrFI	CCNGG	1 cut(s)	259
SfaNI	GCATC	3 cut(s)	119, 500, 911
SfcI	CTRYAG	1 cut(s)	470
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	7 cut(s)	126, 161, 215, 475, 730, 821, 938
SsiI	CCGC	1 cut(s)	753
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	4 cut(s)	98, 221, 542, 644
StyD4I	CCNGG	1 cut(s)	257
TaaI	ACNGT	3 cut(s)	79, 148, 510
TaiI	ACGT	4 cut(s)	61, 613, 843, 1005
TaqI	TCGA	2 cut(s)	48, 298
TasI	AATT	7 cut(s)	126, 161, 215, 475, 730, 821, 938
TfiI	GAWTC	3 cut(s)	356, 407, 670
Tru1I	TTAA	1 cut(s)	1065
Tru9I	TTAA	1 cut(s)	1065
TscAI	CASTG	3 cut(s)	501, 515, 1063
TseFI	GTSAC	2 cut(s)	779, 1003
TseI	GCWGC	4 cut(s)	197, 238, 638, 1022
Tsp45I	GTSAC	2 cut(s)	779, 1003
TspDTI	ATGAA	4 cut(s)	219, 684, 849, 975
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	3 cut(s)	501, 515, 1063
Van91I	CCANNNNNTGG	1 cut(s)	130
XapI	RAATTY	2 cut(s)	730, 821
XbaI	TCTAGA	2 cut(s)	97, 541
XceI	RCATGY	2 cut(s)	110, 720
XcmI	CCANNNNNNNNNTGG	1 cut(s)	716
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	4 cut(s)	98, 221, 542, 644
Zsp2I	ATGCAT	2 cut(s)	6, 112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.