Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017669.1

Orthogroup ID

OG0024343

Physical Location & Seq

Genomic Coordinates Reverse (-)

56612 .. 59842

Gene Structure 3231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017669.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

atggcggaaaagatagagcgcatggaacttgaatctgaatccaaagacaaggtatcattggagcttcaggaactttacaattctcagcaacttttgactgcagaattgactgataaacttgaaaaaactgagaaaaagcttgaggaaactgaacattcattggatgatctcgaggaaaaacatcggcaggcaaatgcgaccattaaagagaaggaatttctgatatcaaatctcctcaaatcggagaaatcacttgttgagcgtgcatttgagcttcgagcagagctagagaatgctgcatcagatgtgtccaatttattttccaaaattgagcgcaaggataaaattgaagatgggaatcggatactggtccagaaattccagtcacagctaactcaacagcttgaaatcttgcataagacagtggcagttgcagtgacacaacaggagcagcagttgaaggatatggaagaagatatgcagtcatttgtatccacaaaggcagaggctaccgaagaacttcgaggaagactaggaaagctgaaaaaaatgtatggttctggtatcaagacactggatggtatagcggtggaccttgaagcaaattctcagtcaactttttgtcatctaaattctgaagtttctaaccactcttctgcagtggaggatctcttcaaaggaattgcttcagaagctgatgaattacttaatgatcttcaaagtaatcttcacaagcaagaggagaagctaagcgcacatgcacaacaacagcgtgaggctcatgccagagcagtggaaatggcacggtcagtttctaaagttactgtggacttcttcaagactctagacatgcatgcatccagtttaagccaaattgtggaagaagcacaaactgtcaatgataagaaactgtctgagcttgaagaaaagtttgaggagtgtgctgctaatgaagaaaggcagttgctagaaaaagtggcagagctgctggcaagttcaaatgctaggaagaaaagactggtccaaacagcagttaatgaccttcgggagagtgcaactagcagaaccaacaagctacagcaagaaatgtcaaccatgcaagattctacttcttctatcaaagcaaaatggacaattcacatggaaaagacagaatctcattacctggaagatacaactgctgtggaatgtggaaagaaagacatggaggaggttcttcagaattgtttgaacaaggcaaaaatgggtgaacaacaatggaagaatgctcaagagtccttgctaagtctagaaaagaaaaatgttgcttctgtggactccattgttaggaggggaacggaagccaatcaagttctacgggaaaggttttcctctgctgtttcggctgcacttgaagatgtagatgttgcagacaaagatctcctttcttctattgaccattcattacaacttgaccatgatgcttgtggaaacctaaactcaactatcggtccctgttgcggggatttgagggaacttaagggaggccactaccacaatattgtcgaaatcactgagaatgcaggaaaatttctactggaggaatatgtggtggatgaaccatcgtgttccacaccgcgaaagaggtcattcaatcttcctagcattgcatccattgaagaacttcggactcctgcttttgatgacttgttgagatcattctgggatggaagatcggcaaagcaggcaaatggagacgcaaaacatcttgcaggggcttatgagggtgcacaatccttaagagattccagacttcctctcactgctattaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0008574 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0030865 GO:0031122 GO:0032502 GO:0032506 GO:0032989 GO:0032991 GO:0040007 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051301 GO:0060560 GO:0061640 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902410 GO:1902850 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

604

Amino Acids

67.89

Weight (kDa)

5.09

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024343)

Species	Orthologous Gene IDs
malus_domestica	MD03G1105800.v1.1
pyrus_communis	pycom11g09920
rosa_multiflora	Rmu_sc0017669.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	877
AccII	CGCG	1 cut(s)	1618
AciI	CCGC	4 cut(s)	5, 587, 1500, 1616
AclWI	GGATC	1 cut(s)	675
AcsI	RAATTY	5 cut(s)	215, 377, 604, 631, 1568
AcuI	CTGAAG	4 cut(s)	50, 657, 672, 1202
AfiI	CCNNNNNNNGG	5 cut(s)	241, 877, 1326, 1499, 1500
AflII	CTTAAG	2 cut(s)	1517, 1777
AjnI	CCWGG	1 cut(s)	1164
Alw21I	GWGCWC	1 cut(s)	1771
Alw26I	GTCTC	1 cut(s)	1728
Alw44I	GTGCAC	1 cut(s)	1767
AlwI	GGATC	1 cut(s)	675
AlwNI	CAGNNNCTG	1 cut(s)	695
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	1525
ApaLI	GTGCAC	1 cut(s)	1767
ApeKI	GCWGC	5 cut(s)	296, 451, 944, 985, 1385
ApoI	RAATTY	5 cut(s)	215, 377, 604, 631, 1568
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
Asp700I	GAANNNNTTC	3 cut(s)	519, 685, 1662
AspLEI	GCGC	3 cut(s)	21, 336, 755
AspS9I	GGNCC	4 cut(s)	370, 592, 1021, 1490
AsuHPI	GGTGA	1 cut(s)	1259
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	4 cut(s)	370, 592, 1021, 1490
BaeGI	GKGCMC	1 cut(s)	1771
BbsI	GAAGAC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	1771
BbvI	GCAGC	5 cut(s)	283, 463, 931, 972, 1372
BccI	CCATC	4 cut(s)	347, 572, 1609, 1700
BciT130I	CCWGG	1 cut(s)	1166
BciVI	GTATCC	2 cut(s)	357, 502
BcoDI	GTCTC	1 cut(s)	1728
BfaI	CTAG	8 cut(s)	287, 533, 845, 968, 1005, 1059, 1289, 1641
BfmI	CTRYAG	3 cut(s)	99, 657, 1076
BfrI	CTTAAG	2 cut(s)	1517, 1777
BfuI	GTATCC	2 cut(s)	357, 502
BglII	AGATCT	1 cut(s)	1417
BisI	GCNGC	5 cut(s)	297, 452, 945, 986, 1386
BlpI	GCTNAGC	1 cut(s)	749
BlsI	GCNGC	5 cut(s)	298, 453, 946, 987, 1387
Bme1390I	CCNGG	1 cut(s)	1166
Bme18I	GGWCC	4 cut(s)	370, 592, 1021, 1490
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	4 cut(s)	370, 592, 1021, 1490
BmiI	GGNNCC	1 cut(s)	1492
BmrFI	CCNGG	1 cut(s)	1166
BmsI	GCATC	4 cut(s)	308, 866, 1450, 1658
BpiI	GAAGAC	1 cut(s)	535
BpmI	CTGGAG	1 cut(s)	1598
Bpu1102I	GCTNAGC	1 cut(s)	749
BpuEI	CTTGAG	2 cut(s)	161, 1254
BsaBI	GATNNNNATC	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	5 cut(s)	241, 877, 1326, 1499, 1500
Bse1I	ACTGG	6 cut(s)	372, 382, 579, 861, 1023, 1581
Bse3DI	GCAATG	1 cut(s)	1644
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	1166
BseGI	GGATG	6 cut(s)	169, 583, 857, 1600, 1649, 1711
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	5 cut(s)	241, 877, 1326, 1499, 1500
BseMI	GCAATG	1 cut(s)	1644
BseMII	CTCAG	5 cut(s)	98, 120, 623, 906, 1545
BseNI	ACTGG	6 cut(s)	372, 382, 579, 861, 1023, 1581
BseRI	GAGGAG	4 cut(s)	224, 755, 950, 1223
BseSI	GKGCMC	1 cut(s)	1771
BseXI	GCAGC	5 cut(s)	283, 463, 931, 972, 1372
BsgI	GTGCAG	1 cut(s)	1371
Bsh1236I	CGCG	1 cut(s)	1618
BshFI	GGCC	1 cut(s)	1527
BsiHKAI	GWGCWC	1 cut(s)	1771
BsiHKCI	CYCGRG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	1476
BslI	CCNNNNNNNGG	5 cut(s)	241, 877, 1326, 1499, 1500
BsmAI	GTCTC	1 cut(s)	1728
BsmBI	CGTCTC	1 cut(s)	1728
BsmFI	GGGAC	1 cut(s)	1476
BsmI	GAATGC	3 cut(s)	298, 1270, 1564
BsnI	GGCC	1 cut(s)	1527
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	1771
Bsp143I	GATC	6 cut(s)	166, 667, 712, 1417, 1694, 1712
Bsp1720I	GCTNAGC	1 cut(s)	749
BspACI	CCGC	4 cut(s)	5, 587, 1500, 1616
BspANI	GGCC	1 cut(s)	1527
BspCNI	CTCAG	5 cut(s)	97, 121, 622, 907, 1546
BspFNI	CGCG	1 cut(s)	1618
BspLI	GGNNCC	1 cut(s)	1492
BspMAI	CTGCAG	2 cut(s)	103, 661
BspPI	GGATC	1 cut(s)	675
BspTI	CTTAAG	2 cut(s)	1517, 1777
BsrDI	GCAATG	1 cut(s)	1644
BsrI	ACTGG	6 cut(s)	372, 382, 579, 861, 1023, 1581
BssMI	GATC	6 cut(s)	166, 667, 712, 1417, 1694, 1712
Bst2UI	CCWGG	1 cut(s)	1166
Bst4CI	ACNGT	5 cut(s)	424, 807, 826, 895, 912
Bst6I	CTCTTC	2 cut(s)	658, 677
BstAFI	CTTAAG	2 cut(s)	1517, 1777
BstC8I	GCNNGC	5 cut(s)	189, 264, 855, 990, 1725
BstDEI	CTNAG	7 cut(s)	84, 129, 609, 749, 915, 1283, 1554
BstF5I	GGATG	6 cut(s)	169, 583, 857, 1600, 1649, 1711
BstFNI	CGCG	1 cut(s)	1618
BstHHI	GCGC	3 cut(s)	21, 336, 755
BstKTI	GATC	6 cut(s)	169, 670, 715, 1420, 1697, 1715
BstMAI	GTCTC	1 cut(s)	1728
BstMBI	GATC	6 cut(s)	166, 667, 712, 1417, 1694, 1712
BstMWI	GCNNNNNNNGC	3 cut(s)	692, 1382, 1724
BstNI	CCWGG	1 cut(s)	1166
BstNSI	RCATGY	3 cut(s)	761, 853, 857
BstSCI	CCNGG	1 cut(s)	1164
BstSFI	CTRYAG	3 cut(s)	99, 657, 1076
BstSLI	GKGCMC	1 cut(s)	1771
BstUI	CGCG	1 cut(s)	1618
BstV1I	GCAGC	5 cut(s)	283, 463, 931, 972, 1372
BstV2I	GAAGAC	1 cut(s)	535
BstX2I	RGATCY	2 cut(s)	667, 1417
BstXI	CCANNNNNNTGG	1 cut(s)	793
BstYI	RGATCY	2 cut(s)	667, 1417
BsuI	GTATCC	2 cut(s)	357, 502
BsuRI	GGCC	1 cut(s)	1527
BtsCI	GGATG	6 cut(s)	169, 583, 857, 1600, 1649, 1711
BtsI	GCAGTG	4 cut(s)	441, 666, 798, 1800
BtsIMutI	CAGTG	7 cut(s)	429, 441, 572, 666, 798, 1551, 1800
Cac8I	GCNNGC	5 cut(s)	189, 264, 855, 990, 1725
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	3 cut(s)	21, 336, 755
Cfr13I	GGNCC	4 cut(s)	370, 592, 1021, 1490
CseI	GACGC	1 cut(s)	1745
CspCI	CAANNNNNGTGG	2 cut(s)	1164, 1199
CviAII	CATG	9 cut(s)	22, 758, 782, 850, 854, 1096, 1141, 1204, 1457
DdeI	CTNAG	7 cut(s)	84, 129, 609, 749, 915, 1283, 1554
DpnI	GATC	6 cut(s)	168, 669, 714, 1419, 1696, 1714
DpnII	GATC	6 cut(s)	166, 667, 712, 1417, 1694, 1712
Eam1104I	CTCTTC	2 cut(s)	658, 677
EarI	CTCTTC	2 cut(s)	658, 677
EciI	GGCGGA	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	225
Eco47I	GGWCC	4 cut(s)	370, 592, 1021, 1490
Eco57I	CTGAAG	4 cut(s)	50, 657, 672, 1202
Eco88I	CYCGRG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	1164
EcoRV	GATATC	1 cut(s)	225
EcoT22I	ATGCAT	2 cut(s)	855, 859
Esp3I	CGTCTC	1 cut(s)	1728
FaeI	CATG	9 cut(s)	25, 761, 785, 853, 857, 1099, 1144, 1207, 1460
FalI	AAGNNNNNCTT	2 cut(s)	1407, 1439
FaqI	GGGAC	1 cut(s)	1476
FatI	CATG	9 cut(s)	21, 757, 781, 849, 853, 1095, 1140, 1203, 1456
FauI	CCCGC	1 cut(s)	1493
Fnu4HI	GCNGC	5 cut(s)	297, 452, 945, 986, 1386
FokI	GGATG	6 cut(s)	176, 590, 844, 1607, 1636, 1718
Fsp4HI	GCNGC	5 cut(s)	297, 452, 945, 986, 1386
FspBI	CTAG	8 cut(s)	287, 533, 845, 968, 1005, 1059, 1289, 1641
GlaI	GCGC	3 cut(s)	20, 335, 754
GluI	GCNGC	5 cut(s)	297, 452, 945, 986, 1386
GsuI	CTGGAG	1 cut(s)	1598
HaeIII	GGCC	1 cut(s)	1527
HgaI	GACGC	1 cut(s)	1745
HhaI	GCGC	3 cut(s)	21, 336, 755
Hin1II	CATG	9 cut(s)	25, 761, 785, 853, 857, 1099, 1144, 1207, 1460
Hin6I	GCGC	3 cut(s)	19, 334, 753
HinP1I	GCGC	3 cut(s)	19, 334, 753
HincII	GTYRAC	2 cut(s)	615, 1092
HindII	GTYRAC	2 cut(s)	615, 1092
HindIII	AAGCTT	1 cut(s)	137
HphI	GGTGA	1 cut(s)	1259
Hpy166II	GTNNAC	7 cut(s)	592, 615, 829, 1092, 1250, 1315, 1769
Hpy8I	GTNNAC	7 cut(s)	592, 615, 829, 1092, 1250, 1315, 1769
HpyAV	CCTTC	3 cut(s)	205, 454, 1052
HpyCH4III	ACNGT	5 cut(s)	424, 807, 826, 895, 912
HpyF10VI	GCNNNNNNNGC	3 cut(s)	692, 1382, 1724
HpyF3I	CTNAG	7 cut(s)	84, 129, 609, 749, 915, 1283, 1554
Hsp92II	CATG	9 cut(s)	25, 761, 785, 853, 857, 1099, 1144, 1207, 1460
HspAI	GCGC	3 cut(s)	19, 334, 753
Kzo9I	GATC	6 cut(s)	166, 667, 712, 1417, 1694, 1712
LmnI	GCTCC	2 cut(s)	61, 448
Lsp1109I	GCAGC	5 cut(s)	283, 463, 931, 972, 1372
LweI	GCATC	4 cut(s)	308, 866, 1450, 1658
MaeI	CTAG	8 cut(s)	287, 533, 845, 968, 1005, 1059, 1289, 1641
MaeIII	GTNAC	3 cut(s)	384, 436, 820
MalI	GATC	6 cut(s)	168, 669, 714, 1419, 1696, 1714
MboI	GATC	6 cut(s)	166, 667, 712, 1417, 1694, 1712
MflI	RGATCY	2 cut(s)	667, 1417
MhlI	GDGCHC	1 cut(s)	1771
MlyI	GAGTC	4 cut(s)	835, 1283, 1310, 1663
Mph1103I	ATGCAT	2 cut(s)	855, 859
MroXI	GAANNNNTTC	3 cut(s)	519, 685, 1662
MseI	TTAA	7 cut(s)	204, 708, 866, 1035, 1518, 1778, 1809
MspCI	CTTAAG	2 cut(s)	1517, 1777
MspR9I	CCNGG	1 cut(s)	1166
Mva1269I	GAATGC	3 cut(s)	298, 1270, 1564
MvaI	CCWGG	1 cut(s)	1166
MvnI	CGCG	1 cut(s)	1618
MwoI	GCNNNNNNNGC	3 cut(s)	692, 1382, 1724
NdeII	GATC	6 cut(s)	166, 667, 712, 1417, 1694, 1712
NlaIII	CATG	9 cut(s)	25, 761, 785, 853, 857, 1099, 1144, 1207, 1460
NlaIV	GGNNCC	1 cut(s)	1492
NmuCI	GTSAC	2 cut(s)	384, 436
NsiI	ATGCAT	2 cut(s)	855, 859
NspI	RCATGY	3 cut(s)	761, 853, 857
PaeI	GCATGC	1 cut(s)	857
PaeR7I	CTCGAG	1 cut(s)	170
PctI	GAATGC	3 cut(s)	298, 1270, 1564
PdmI	GAANNNNTTC	3 cut(s)	519, 685, 1662
PfeI	GAWTC	6 cut(s)	32, 38, 358, 1103, 1154, 1784
PflMI	CCANNNNNTGG	1 cut(s)	877
PkrI	GCNGC	5 cut(s)	298, 453, 946, 987, 1387
PleI	GAGTC	4 cut(s)	835, 1282, 1310, 1663
PpsI	GAGTC	4 cut(s)	835, 1282, 1310, 1663
Psp6I	CCWGG	1 cut(s)	1164
PspGI	CCWGG	1 cut(s)	1164
PspN4I	GGNNCC	1 cut(s)	1492
PspPI	GGNCC	4 cut(s)	370, 592, 1021, 1490
PstI	CTGCAG	2 cut(s)	103, 661
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	667, 1417
SaqAI	TTAA	7 cut(s)	204, 708, 866, 1035, 1518, 1778, 1809
SatI	GCNGC	5 cut(s)	297, 452, 945, 986, 1386
Sau3AI	GATC	6 cut(s)	166, 667, 712, 1417, 1694, 1712
Sau96I	GGNCC	4 cut(s)	370, 592, 1021, 1490
SchI	GAGTC	4 cut(s)	835, 1283, 1310, 1663
ScrFI	CCNGG	1 cut(s)	1166
SduI	GDGCHC	1 cut(s)	1771
SfaNI	GCATC	4 cut(s)	308, 866, 1450, 1658
SfcI	CTRYAG	3 cut(s)	99, 657, 1076
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	4 cut(s)	370, 592, 1021, 1490
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	5 cut(s)	140, 170, 1269, 1517, 1777
SmoI	CTYRAG	5 cut(s)	140, 170, 1269, 1517, 1777
SphI	GCATGC	1 cut(s)	857
SsiI	CCGC	4 cut(s)	5, 587, 1500, 1616
SspI	AATATT	1 cut(s)	1540
SspMI	CTAG	8 cut(s)	287, 533, 845, 968, 1005, 1059, 1289, 1641
StyD4I	CCNGG	1 cut(s)	1164
TaaI	ACNGT	5 cut(s)	424, 807, 826, 895, 912
TaqI	TCGA	4 cut(s)	171, 277, 523, 1545
TaqII	GACCGA	1 cut(s)	1478
TfiI	GAWTC	6 cut(s)	32, 38, 358, 1103, 1154, 1784
Tru1I	TTAA	7 cut(s)	204, 708, 866, 1035, 1518, 1778, 1809
Tru9I	TTAA	7 cut(s)	204, 708, 866, 1035, 1518, 1778, 1809
TscAI	CASTG	7 cut(s)	429, 441, 579, 666, 798, 1558, 1807
TseFI	GTSAC	2 cut(s)	384, 436
TseI	GCWGC	5 cut(s)	296, 451, 944, 985, 1385
Tsp45I	GTSAC	2 cut(s)	384, 436
TspDTI	ATGAA	5 cut(s)	147, 714, 966, 1431, 1611
TspGWI	ACGGA	1 cut(s)	1352
TspRI	CASTG	7 cut(s)	429, 441, 579, 666, 798, 1558, 1807
Van91I	CCANNNNNTGG	1 cut(s)	877
Vha464I	CTTAAG	2 cut(s)	1517, 1777
VneI	GTGCAC	1 cut(s)	1767
VpaK11BI	GGWCC	4 cut(s)	370, 592, 1021, 1490
XapI	RAATTY	5 cut(s)	215, 377, 604, 631, 1568
XbaI	TCTAGA	2 cut(s)	844, 1288
XceI	RCATGY	3 cut(s)	761, 853, 857
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1463
XhoI	CTCGAG	1 cut(s)	170
XmnI	GAANNNNTTC	3 cut(s)	519, 685, 1662
XspI	CTAG	8 cut(s)	287, 533, 845, 968, 1005, 1059, 1289, 1641
Zsp2I	ATGCAT	2 cut(s)	855, 859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.