Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0022552

Physical Location & Seq

Genomic Coordinates Forward (+)

8392013 .. 8392665

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10030.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCCCTACAAGGAGGTTCCAATCATCTTCGGAGAGTGGTGGAATGCAGATCCTGAGGCAGTTATTAGCCAGGCCTTGCAAACAGGTGGAGGACCAAATGTCTCCGATGCTTATACTTTCAATGGATTCCCAGGGCCCATGTACAACTGTTCTGCCAAAGATGCATTCAAGCTAAAGGTTCAATCTGGGAAGACCTACCTTCTCCGGCTAATCAATGCAGCACTCAATGACGAGCTCTTCTTCAGCATAGCGAACCACACCCTCAAAGTGGTAGAAGCCGACGCCATTTATGTCAAACTACAAATGTTCTGCTCAAGACCAAACCCCATTTCCCCAGTGCCACATTTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

118

Amino Acids

13.0

Weight (kDa)

6.04

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022552)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g10030
rosa_samantha	Rh5BG001200 Rh5DG433300 Rh5DG434200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	121, 169, 182
AhdI	GACNNNNNGTC	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	69, 130
AjuI	GAANNNNNNNTTGG	4 cut(s)	149, 181, 313, 345
AluBI	AGCT	2 cut(s)	172, 235
AluI	AGCT	2 cut(s)	172, 235
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	1 cut(s)	44
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	72, 134
ApaI	GGGCCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	92, 134, 135
AvaII	GGWCC	1 cut(s)	92
AxyI	CCTNAGG	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	138
BanII	GRGCYC	2 cut(s)	138, 237
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	230
BciT130I	CCWGG	2 cut(s)	71, 132
BcoDI	GTCTC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	71, 132
Bme18I	GGWCC	1 cut(s)	92
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	92, 134, 135
BmiI	GGNNCC	2 cut(s)	18, 136
BmrFI	CCNGG	2 cut(s)	71, 132
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	2 cut(s)	97, 151
BmuI	ACTGGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	298
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	130, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	335
Bse21I	CCTNAGG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	71, 132
BseDI	CCNNGG	2 cut(s)	130, 131
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	335
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	2 cut(s)	74, 136
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	106
BsmI	GAATGC	2 cut(s)	49, 164
BsnI	GGCC	2 cut(s)	74, 136
Bsp120I	GGGCCC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	138, 237
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	49
BspANI	GGCC	2 cut(s)	74, 136
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	18, 136
BspPI	GGATC	1 cut(s)	44
BspQI	GCTCTTC	1 cut(s)	242
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	130, 131
BssMI	GATC	1 cut(s)	49
BssNI	GRCGYC	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	71, 132
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	282
BstAUI	TGTACA	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	2 cut(s)	71, 132
BstSCI	CCNGG	2 cut(s)	69, 130
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
Bsu36I	CCTNAGG	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	74, 136
BtsIMutI	CAGTG	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	92, 134, 135
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	7 cut(s)	69, 74, 136, 172, 208, 235, 278
CviKI_1	RGCY	7 cut(s)	69, 74, 136, 172, 208, 235, 278
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DriI	GACNNNNNGTC	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	242
Eam1105I	GACNNNNNGTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	74
Eco24I	GRGCYC	2 cut(s)	138, 237
Eco47I	GGWCC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	226
Eco81I	CCTNAGG	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	69, 130
EcoT22I	ATGCAT	1 cut(s)	166
EcoT38I	GRGCYC	2 cut(s)	138, 237
FaeI	CATG	1 cut(s)	142
FaiI	YATR	5 cut(s)	114, 140, 248, 291, 352
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	219
FriOI	GRGCYC	2 cut(s)	138, 237
Fsp4HI	GCNGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	74, 136
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	142
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	32, 106
Hpy188III	TCNNGA	2 cut(s)	53, 315
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	4 cut(s)	47, 79, 164, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	49
LguI	GCTCTTC	1 cut(s)	242
LpnPI	CCDG	9 cut(s)	56, 66, 69, 83, 117, 144, 171, 218, 348
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	2 cut(s)	97, 151
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	4 cut(s)	19, 202, 229, 232
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	138, 237
MnlI	CCTC	4 cut(s)	7, 49, 83, 272
Mph1103I	ATGCAT	1 cut(s)	166
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	2 cut(s)	71, 132
Mva1269I	GAATGC	2 cut(s)	49, 164
MvaI	CCWGG	2 cut(s)	71, 132
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	18, 136
NsiI	ATGCAT	1 cut(s)	166
PasI	CCCWGGG	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	242
PctI	GAATGC	2 cut(s)	49, 164
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	69, 130
PspGI	CCWGG	2 cut(s)	69, 130
PspN4I	GGNNCC	2 cut(s)	18, 136
PspOMI	GGGCCC	1 cut(s)	134
PspPI	GGNCC	3 cut(s)	92, 134, 135
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	242
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	3 cut(s)	92, 134, 135
ScrFI	CCNGG	2 cut(s)	71, 132
SduI	GDGCHC	2 cut(s)	138, 237
SetI	ASST	7 cut(s)	18, 88, 174, 180, 197, 201, 237
SfaNI	GCATC	2 cut(s)	97, 151
SinI	GGWCC	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
SseBI	AGGCCT	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	69, 130
TaaI	ACNGT	1 cut(s)	149
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	126
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	1 cut(s)	218
TspRI	CASTG	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.