Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0022552

Physical Location & Seq

Genomic Coordinates Reverse (-)

69385769 .. 69403867

Gene Structure 18099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG434200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCCCTTGATTCCTATACATTCAAGCTTAAGGTTCAAGCTGGGAAGACATACCTTCTGTGCTTGATCAATGCAGCACTGAACGACGAACTTTTCTTCAGCATTGCAAATCATACTCTCAAAGTAGTCGAAACAGATGCTGTTTATGTTAAGCCCTTCGACACTGACACCATTCTCATTGCCCTAGGACAAACCACAAACGTTCTTCTCAAAACCAAGCCTAACTTCCCAAATGCCACATTTCTCATGACCGCAAGGCCATACGTGACTGGTCTAGGCACCTTTGACAACTTCACTGTTGCTGCCATTCTAGAGTACGAAACGACTGCACTTCACTCAATCCTCCCATTGAACAAACTTTCGCTCCACAAACCAATTCTCTCAACTCTAAACGACACATCGTTTGCAACAAAGTTCGCCAGCAAACTCCGCAGCTTAAACACTTTAGAGTTCCCAGTGAACGTCCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

156

Amino Acids

17.25

Weight (kDa)

7.83

Isoelectric Point (pI)

20.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	7 - 107	1.4e-29	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0022552)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g10030
rosa_samantha	Rh5BG001200 Rh5DG433300 Rh5DG434200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	2 cut(s)	252, 430
AclI	AACGTT	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	317
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	25, 38, 352
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	3 cut(s)	28, 41, 435
AluI	AGCT	3 cut(s)	28, 41, 435
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	3, 257
ApeKI	GCWGC	3 cut(s)	74, 302, 432
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AspA2I	CCTAGG	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	86, 289, 444
BcgI	CGANNNNNNTGC	4 cut(s)	119, 153, 308, 342
BclI	TGATCA	1 cut(s)	66
BfaI	CTAG	3 cut(s)	185, 275, 311
BfrI	CTTAAG	1 cut(s)	29
BisI	GCNGC	3 cut(s)	75, 303, 433
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	3 cut(s)	76, 304, 434
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	280
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	449
BpiI	GAAGAC	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bse1I	ACTGG	2 cut(s)	274, 455
Bse3DI	GCAATG	2 cut(s)	102, 177
BseDI	CCNNGG	1 cut(s)	184
BseMI	GCAATG	2 cut(s)	102, 177
BseNI	ACTGG	2 cut(s)	274, 455
BseXI	GCAGC	3 cut(s)	86, 289, 444
BseYI	CCCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	5, 259
BshNI	GGYRCC	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	5, 259
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	252, 430
BspANI	GGCC	2 cut(s)	5, 259
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	2 cut(s)	102, 177
BsrI	ACTGG	2 cut(s)	274, 455
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	298
BstAFI	CTTAAG	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	421
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	86, 289, 444
BstV2I	GAAGAC	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	5, 259
BtsIMutI	CAGTG	4 cut(s)	77, 162, 294, 462
Cac8I	GCNNGC	1 cut(s)	421
CaiI	CAGNNNCTG	1 cut(s)	140
CciI	TCATGA	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	7 cut(s)	5, 28, 41, 154, 220, 259, 435
CviKI_1	RGCY	7 cut(s)	5, 28, 41, 154, 220, 259, 435
CviQI	GTAC	1 cut(s)	316
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	1 cut(s)	250
FaiI	YATR	6 cut(s)	18, 52, 114, 147, 248, 262
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	1 cut(s)	246
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	75, 303, 433
Fsp4HI	GCNGC	3 cut(s)	75, 303, 433
FspBI	CTAG	3 cut(s)	185, 275, 311
GluI	GCNGC	3 cut(s)	75, 303, 433
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	5, 259
Hin1II	CATG	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188III	TCNNGA	2 cut(s)	247, 311
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	65, 166
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	3 cut(s)	201, 264, 462
HpyCH4V	TGCA	4 cut(s)	74, 107, 329, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
HpySE526I	ACGT	3 cut(s)	201, 264, 462
Hsp92II	CATG	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	369
LpnPI	CCDG	3 cut(s)	27, 255, 433
Lsp1109I	GCAGC	3 cut(s)	86, 289, 444
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	3 cut(s)	185, 275, 311
MaeII	ACGT	3 cut(s)	201, 264, 462
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	3 cut(s)	58, 88, 197
MluCI	AATT	1 cut(s)	375
MnlI	CCTC	1 cut(s)	353
MseI	TTAA	3 cut(s)	30, 150, 437
MspCI	CTTAAG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	429
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	265
PagI	TCATGA	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	76, 304, 434
Ppu21I	YACGTR	1 cut(s)	265
Psp1406I	AACGTT	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	30, 150, 437
SatI	GCNGC	3 cut(s)	75, 303, 433
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	9 cut(s)	30, 36, 43, 57, 204, 267, 284, 437, 465
SfaNI	GCATC	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	2 cut(s)	252, 430
SspMI	CTAG	3 cut(s)	185, 275, 311
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	3 cut(s)	204, 267, 465
TaqI	TCGA	2 cut(s)	129, 159
TasI	AATT	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	30, 150, 437
Tru9I	TTAA	3 cut(s)	30, 150, 437
TscAI	CASTG	4 cut(s)	84, 169, 301, 462
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	3 cut(s)	74, 302, 432
Tsp45I	GTSAC	1 cut(s)	265
TspRI	CASTG	4 cut(s)	84, 169, 301, 462
Vha464I	CTTAAG	1 cut(s)	29
XbaI	TCTAGA	1 cut(s)	310
XmaJI	CCTAGG	1 cut(s)	184
XspI	CTAG	3 cut(s)	185, 275, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.