pycom11g12670

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0016416
Physical Location & Seq
Forward (+)
11581935 .. 11582813
879 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12670.1

Sequence Viewer

Length: 879 bp
ATGTTGATGGGAGAAATAGCTGAAATGGACTCCCTAAAACCCGTTGTCTACTGTGCTAAGGAAATTGAGCAATGCATTACCACATATCAGCACTTTTCTTCATGTAGGTTCAGTCGAAATCCGAAGGGAAGTGTTGATCCACTTTCTGTGAAGTTTGCACCTTCTTTCTGCATCGTTCAGAGGATTTTTGAGCTAAAGCAACAACTTCAAGAATTGGTTGTCAGCGAAGGGTGGAAGCAATGGAAGATTAGTGCATCAGATGACATTTTAAGTATTGAAGCTGCCATTTTAGGGGATGACTTCTGGAGCAGCGCGCATCTGTTGTTGCAAGTATACGAGCCATTTGTAAGATTGCTTCCTACACTGGATATTGATAAACTTGTCATGGGTGATATTTGTGACTGGTGGATTCAAGCTCTTGAAGCCATCAAATGTAAGGATATTGATTATGGCATACAGAATCAGTTGAAAGAGCTGATAGAGAACAGATGGGATGCATTATTTTCTCCACTTCATGCTGCTGGTTACATACTGAACCCTAGACATTTTGGGAAAGCCAAACATAAAATTGTCATGAGAGGTTGGAAAGCCACCCTAGAAAGATATGAGCCGGAAAGTGCAAACAGGCGGGTGCCAAGAGAGCAGCTCAGCTCTTACTGGCGACTGAAGGGCTCCTTCGGAGATGAAGATGCTGTGGAGTGTAGGGATAAAATGGAGCCAGTTGCATGGTGGGAGAACTTTGGATTTGAGACGCCGAACTTACAGACACTAGCTGTAAAAAATTTGAGTCAGGTTTCAACCATTGCAATGTGTCAAAAGATATGGCAAGAATATGAGTTTCCTGGTCACGAAACATCCAACCGATGGAGAATGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

293

Amino Acids

33.98

Weight (kDa)

5.51

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016416)

Species Orthologous Gene IDs
malus_domestica MD11G1156100.v1.1
prunus_persica Prupe.6G118200_v2.0.a1 Prupe.I001200_v2.0.a1
pyrus_communis pycom11g12670
rosa_chinensis RchiOBHm_Chr5g0055451
rosa_laevigata RLG00000034990
rosa_multiflora Rmu_co8283751.1_g000001
rosa_roxburghii Rroxscaffold_1G00024870
rosa_rugosa Rorug05G0293000 Rorug05G0293000
rosa_samantha Rh5AG362700 Rh5BG374900 Rh5CG396700 Rh5DG388200
rosa_wichuraiana Rw5G034140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 631
AccB7I CCANNNNNTGG 1 cut(s) 864
AccI GTMKAC 2 cut(s) 48, 333
AccII CGCG 1 cut(s) 314
AciI CCGC 1 cut(s) 628
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 1 cut(s) 781
AcuI CTGAAG 1 cut(s) 686
AcyI GRCGYC 1 cut(s) 752
AfiI CCNNNNNNNGG 2 cut(s) 291, 864
AgsI TTSAA 6 cut(s) 209, 278, 413, 422, 469, 798
AjnI CCWGG 1 cut(s) 841
AluBI AGCT 8 cut(s) 20, 193, 281, 416, 475, 646, 651, 773
AluI AGCT 8 cut(s) 20, 193, 281, 416, 475, 646, 651, 773
Alw26I GTCTC 1 cut(s) 743
AlwI GGATC 1 cut(s) 131
ApeKI GCWGC 4 cut(s) 281, 309, 518, 643
ApoI RAATTY 1 cut(s) 781
AspLEI GCGC 2 cut(s) 314, 316
AsuHPI GGTGA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 674
BarI GAAGNNNNNNTAC 2 cut(s) 339, 371
BbvI GCAGC 4 cut(s) 268, 321, 505, 655
BccI CCATC 3 cut(s) 434, 483, 858
BciT130I CCWGG 1 cut(s) 843
BcoDI GTCTC 1 cut(s) 743
BfaI CTAG 3 cut(s) 540, 596, 770
BisI GCNGC 4 cut(s) 282, 310, 519, 644
BlpI GCTNAGC 1 cut(s) 647
BlsI GCNGC 4 cut(s) 283, 311, 520, 645
Bme1390I CCNGG 1 cut(s) 843
BmiI GGNNCC 3 cut(s) 633, 673, 717
BmrFI CCNGG 1 cut(s) 843
BmsI GCATC 5 cut(s) 180, 263, 325, 484, 679
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpmI CTGGAG 1 cut(s) 325
Bpu10I CCTNAGC 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 647
BsaHI GRCGYC 1 cut(s) 752
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 864
Bse1I ACTGG 4 cut(s) 369, 407, 662, 719
Bse3DI GCAATG 4 cut(s) 77, 245, 801, 813
BseBI CCWGG 1 cut(s) 843
BseGI GGATG 3 cut(s) 301, 499, 854
BseLI CCNNNNNNNGG 2 cut(s) 291, 864
BseMI GCAATG 4 cut(s) 77, 245, 801, 813
BseMII CTCAG 1 cut(s) 661
BseNI ACTGG 4 cut(s) 369, 407, 662, 719
BsePI GCGCGC 1 cut(s) 312
BseXI GCAGC 4 cut(s) 268, 321, 505, 655
Bsh1236I CGCG 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 631
BsiSI CCGG 1 cut(s) 611
BslI CCNNNNNNNGG 2 cut(s) 291, 864
BsmAI GTCTC 1 cut(s) 743
BsmBI CGTCTC 1 cut(s) 743
Bsp1286I GDGCHC 1 cut(s) 674
Bsp143I GATC 1 cut(s) 136
Bsp1720I GCTNAGC 1 cut(s) 647
BspACI CCGC 1 cut(s) 628
BspCNI CTCAG 1 cut(s) 660
BspFNI CGCG 1 cut(s) 314
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 3 cut(s) 633, 673, 717
BspPI GGATC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 631
BsrDI GCAATG 4 cut(s) 77, 245, 801, 813
BsrI ACTGG 4 cut(s) 369, 407, 662, 719
BssHII GCGCGC 1 cut(s) 312
BssMI GATC 1 cut(s) 136
BssNAI GTATAC 1 cut(s) 334
BssNI GRCGYC 1 cut(s) 752
Bst1107I GTATAC 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 843
Bst4CI ACNGT 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 752
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 2 cut(s) 57, 647
BstF5I GGATG 3 cut(s) 301, 499, 854
BstFNI CGCG 1 cut(s) 314
BstHHI GCGC 2 cut(s) 314, 316
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 422, 640
BstNI CCWGG 1 cut(s) 843
BstSCI CCNGG 1 cut(s) 841
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 4 cut(s) 268, 321, 505, 655
BstXI CCANNNNNNTGG 1 cut(s) 726
BstZ17I GTATAC 1 cut(s) 334
BtsCI GGATG 3 cut(s) 301, 499, 854
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 314
CciI TCATGA 1 cut(s) 573
CfoI GCGC 2 cut(s) 314, 316
CseI GACGC 1 cut(s) 760
CviAII CATG 5 cut(s) 102, 385, 515, 574, 726
DdeI CTNAG 2 cut(s) 57, 647
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 841
EcoT22I ATGCAT 2 cut(s) 77, 499
EcoT38I GRGCYC 1 cut(s) 674
Esp3I CGTCTC 1 cut(s) 743
FaeI CATG 5 cut(s) 105, 388, 518, 577, 729
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FatI CATG 5 cut(s) 101, 384, 514, 573, 725
FauI CCCGC 1 cut(s) 621
FblI GTMKAC 2 cut(s) 48, 333
Fnu4HI GCNGC 4 cut(s) 282, 310, 519, 644
FokI GGATG 3 cut(s) 308, 506, 841
FriOI GRGCYC 1 cut(s) 674
Fsp4HI GCNGC 4 cut(s) 282, 310, 519, 644
FspBI CTAG 3 cut(s) 540, 596, 770
GlaI GCGC 2 cut(s) 313, 315
GluI GCNGC 4 cut(s) 282, 310, 519, 644
GsuI CTGGAG 1 cut(s) 325
HapII CCGG 1 cut(s) 611
HgaI GACGC 1 cut(s) 760
HhaI GCGC 2 cut(s) 314, 316
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 5 cut(s) 105, 388, 518, 577, 729
Hin6I GCGC 2 cut(s) 312, 314
HinP1I GCGC 2 cut(s) 312, 314
HinfI GANTC 4 cut(s) 29, 409, 460, 787
HpaII CCGG 1 cut(s) 611
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 2 cut(s) 49, 334
Hpy188I TCNGA 4 cut(s) 123, 180, 259, 680
Hpy188III TCNNGA 5 cut(s) 209, 304, 419, 574, 848
Hpy8I GTNNAC 2 cut(s) 49, 334
HpyAV CCTTC 5 cut(s) 118, 171, 221, 661, 685
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 9 cut(s) 75, 158, 171, 254, 328, 497, 620, 725, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 640
HpyF3I CTNAG 2 cut(s) 57, 647
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 5 cut(s) 105, 388, 518, 577, 729
HspAI GCGC 2 cut(s) 312, 314
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 3 cut(s) 306, 677, 715
Lsp1109I GCAGC 4 cut(s) 268, 321, 505, 655
LweI GCATC 5 cut(s) 180, 263, 325, 484, 679
MaeI CTAG 3 cut(s) 540, 596, 770
MaeIII GTNAC 3 cut(s) 398, 524, 845
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 3 cut(s) 90, 256, 698
MhlI GDGCHC 1 cut(s) 674
MluCI AATT 4 cut(s) 63, 212, 567, 781
MlyI GAGTC 2 cut(s) 23, 796
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 2 cut(s) 174, 572
Mph1103I ATGCAT 2 cut(s) 77, 499
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 806
MspI CCGG 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 843
MvaI CCWGG 1 cut(s) 843
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 422, 640
NdeII GATC 1 cut(s) 136
NlaIII CATG 5 cut(s) 105, 388, 518, 577, 729
NlaIV GGNNCC 3 cut(s) 633, 673, 717
NmuCI GTSAC 2 cut(s) 398, 845
NsiI ATGCAT 2 cut(s) 77, 499
PagI TCATGA 1 cut(s) 573
PauI GCGCGC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 409, 460
PflMI CCANNNNNTGG 1 cut(s) 864
PkrI GCNGC 4 cut(s) 283, 311, 520, 645
PleI GAGTC 2 cut(s) 23, 795
PpsI GAGTC 2 cut(s) 23, 795
Psp6I CCWGG 1 cut(s) 841
PspGI CCWGG 1 cut(s) 841
PspN4I GGNNCC 3 cut(s) 633, 673, 717
PteI GCGCGC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 806
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 4 cut(s) 282, 310, 519, 644
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 2 cut(s) 23, 796
ScrFI CCNGG 1 cut(s) 843
SduI GDGCHC 1 cut(s) 674
SfaNI GCATC 5 cut(s) 180, 263, 325, 484, 679
SmiMI CAYNNNNRTG 1 cut(s) 806
Sse9I AATT 4 cut(s) 63, 212, 567, 781
SsiI CCGC 1 cut(s) 628
SspMI CTAG 3 cut(s) 540, 596, 770
StyD4I CCNGG 1 cut(s) 841
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 115
TasI AATT 4 cut(s) 63, 212, 567, 781
TfiI GAWTC 2 cut(s) 409, 460
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 2 cut(s) 398, 845
TseI GCWGC 4 cut(s) 281, 309, 518, 643
Tsp45I GTSAC 2 cut(s) 398, 845
TspDTI ATGAA 3 cut(s) 90, 503, 699
TspRI CASTG 1 cut(s) 369
Van91I CCANNNNNTGG 1 cut(s) 864
XapI RAATTY 1 cut(s) 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 726
XmiI GTMKAC 2 cut(s) 48, 333
XspI CTAG 3 cut(s) 540, 596, 770
Zsp2I ATGCAT 2 cut(s) 77, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.