pycom11g12670

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0016416
Physical Location & Seq
Forward (+)
11581935 .. 11582813
879 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
ATGTTGATGGGAGAAATAGCTGAAATGGACTCCCTAAAACCCGTTGTCTACTGTGCTAAGGAAATTGAGCAATGCATTACCACATATCAGCACTTTTCTTCATGTAGGTTCAGTCGAAATCCGAAGGGAAGTGTTGATCCACTTTCTGTGAAGTTTGCACCTTCTTTCTGCATCGTTCAGAGGATTTTTGAGCTAAAGCAACAACTTCAAGAATTGGTTGTCAGCGAAGGGTGGAAGCAATGGAAGATTAGTGCATCAGATGACATTTTAAGTATTGAAGCTGCCATTTTAGGGGATGACTTCTGGAGCAGCGCGCATCTGTTGTTGCAAGTATACGAGCCATTTGTAAGATTGCTTCCTACACTGGATATTGATAAACTTGTCATGGGTGATATTTGTGACTGGTGGATTCAAGCTCTTGAAGCCATCAAATGTAAGGATATTGATTATGGCATACAGAATCAGTTGAAAGAGCTGATAGAGAACAGATGGGATGCATTATTTTCTCCACTTCATGCTGCTGGTTACATACTGAACCCTAGACATTTTGGGAAAGCCAAACATAAAATTGTCATGAGAGGTTGGAAAGCCACCCTAGAAAGATATGAGCCGGAAAGTGCAAACAGGCGGGTGCCAAGAGAGCAGCTCAGCTCTTACTGGCGACTGAAGGGCTCCTTCGGAGATGAAGATGCTGTGGAGTGTAGGGATAAAATGGAGCCAGTTGCATGGTGGGAGAACTTTGGATTTGAGACGCCGAACTTACAGACACTAGCTGTAAAAAATTTGAGTCAGGTTTCAACCATTGCAATGTGTCAAAAGATATGGCAAGAATATGAGTTTCCTGGTCACGAAACATCCAACCGATGGAGAATGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

293

Amino Acids

33.98

Weight (kDa)

5.51

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016416)

Species Orthologous Gene IDs
malus_domestica MD11G1156100.v1.1
prunus_persica Prupe.6G118200_v2.0.a1 Prupe.I001200_v2.0.a1
pyrus_communis pycom11g12670
rosa_chinensis RchiOBHm_Chr5g0055451
rosa_laevigata RLG00000034990
rosa_multiflora Rmu_co8283751.1_g000001
rosa_roxburghii Rroxscaffold_1G00024870
rosa_rugosa Rorug05G0293000 Rorug05G0293000
rosa_samantha Rh5AG362700 Rh5BG374900 Rh5CG396700 Rh5DG388200
rosa_wichuraiana Rw5G034140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 631
AccB7I CCANNNNNTGG 1 cut(s) 864
AccI GTMKAC 2 cut(s) 48, 333
AccII CGCG 1 cut(s) 314
AciI CCGC 1 cut(s) 628
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 1 cut(s) 781
AcuI CTGAAG 1 cut(s) 686
AcyI GRCGYC 1 cut(s) 752
AfiI CCNNNNNNNGG 2 cut(s) 291, 864
AgsI TTSAA 6 cut(s) 209, 278, 413, 422, 469, 798
AjnI CCWGG 1 cut(s) 841
AluBI AGCT 8 cut(s) 20, 193, 281, 416, 475, 646, 651, 773
AluI AGCT 8 cut(s) 20, 193, 281, 416, 475, 646, 651, 773
Alw26I GTCTC 1 cut(s) 743
AlwI GGATC 1 cut(s) 131
ApeKI GCWGC 4 cut(s) 281, 309, 518, 643
ApoI RAATTY 1 cut(s) 781
AspLEI GCGC 2 cut(s) 314, 316
AsuHPI GGTGA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 674
BarI GAAGNNNNNNTAC 2 cut(s) 339, 371
BbvI GCAGC 4 cut(s) 268, 321, 505, 655
BccI CCATC 3 cut(s) 434, 483, 858
BciT130I CCWGG 1 cut(s) 843
BcoDI GTCTC 1 cut(s) 743
BfaI CTAG 3 cut(s) 540, 596, 770
BisI GCNGC 4 cut(s) 282, 310, 519, 644
BlpI GCTNAGC 1 cut(s) 647
BlsI GCNGC 4 cut(s) 283, 311, 520, 645
Bme1390I CCNGG 1 cut(s) 843
BmiI GGNNCC 3 cut(s) 633, 673, 717
BmrFI CCNGG 1 cut(s) 843
BmsI GCATC 5 cut(s) 180, 263, 325, 484, 679
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpmI CTGGAG 1 cut(s) 325
Bpu10I CCTNAGC 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 647
BsaHI GRCGYC 1 cut(s) 752
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 864
Bse1I ACTGG 4 cut(s) 369, 407, 662, 719
Bse3DI GCAATG 4 cut(s) 77, 245, 801, 813
BseBI CCWGG 1 cut(s) 843
BseGI GGATG 3 cut(s) 301, 499, 854
BseLI CCNNNNNNNGG 2 cut(s) 291, 864
BseMI GCAATG 4 cut(s) 77, 245, 801, 813
BseMII CTCAG 1 cut(s) 661
BseNI ACTGG 4 cut(s) 369, 407, 662, 719
BsePI GCGCGC 1 cut(s) 312
BseXI GCAGC 4 cut(s) 268, 321, 505, 655
Bsh1236I CGCG 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 631
BsiSI CCGG 1 cut(s) 611
BslI CCNNNNNNNGG 2 cut(s) 291, 864
BsmAI GTCTC 1 cut(s) 743
BsmBI CGTCTC 1 cut(s) 743
Bsp1286I GDGCHC 1 cut(s) 674
Bsp143I GATC 1 cut(s) 136
Bsp1720I GCTNAGC 1 cut(s) 647
BspACI CCGC 1 cut(s) 628
BspCNI CTCAG 1 cut(s) 660
BspFNI CGCG 1 cut(s) 314
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 3 cut(s) 633, 673, 717
BspPI GGATC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 631
BsrDI GCAATG 4 cut(s) 77, 245, 801, 813
BsrI ACTGG 4 cut(s) 369, 407, 662, 719
BssHII GCGCGC 1 cut(s) 312
BssMI GATC 1 cut(s) 136
BssNAI GTATAC 1 cut(s) 334
BssNI GRCGYC 1 cut(s) 752
Bst1107I GTATAC 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 843
Bst4CI ACNGT 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 752
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 2 cut(s) 57, 647
BstF5I GGATG 3 cut(s) 301, 499, 854
BstFNI CGCG 1 cut(s) 314
BstHHI GCGC 2 cut(s) 314, 316
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 422, 640
BstNI CCWGG 1 cut(s) 843
BstSCI CCNGG 1 cut(s) 841
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 4 cut(s) 268, 321, 505, 655
BstXI CCANNNNNNTGG 1 cut(s) 726
BstZ17I GTATAC 1 cut(s) 334
BtsCI GGATG 3 cut(s) 301, 499, 854
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 314
CciI TCATGA 1 cut(s) 573
CfoI GCGC 2 cut(s) 314, 316
CseI GACGC 1 cut(s) 760
CviAII CATG 5 cut(s) 102, 385, 515, 574, 726
DdeI CTNAG 2 cut(s) 57, 647
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 841
EcoT22I ATGCAT 2 cut(s) 77, 499
EcoT38I GRGCYC 1 cut(s) 674
Esp3I CGTCTC 1 cut(s) 743
FaeI CATG 5 cut(s) 105, 388, 518, 577, 729
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FatI CATG 5 cut(s) 101, 384, 514, 573, 725
FauI CCCGC 1 cut(s) 621
FblI GTMKAC 2 cut(s) 48, 333
Fnu4HI GCNGC 4 cut(s) 282, 310, 519, 644
FokI GGATG 3 cut(s) 308, 506, 841
FriOI GRGCYC 1 cut(s) 674
Fsp4HI GCNGC 4 cut(s) 282, 310, 519, 644
FspBI CTAG 3 cut(s) 540, 596, 770
GlaI GCGC 2 cut(s) 313, 315
GluI GCNGC 4 cut(s) 282, 310, 519, 644
GsuI CTGGAG 1 cut(s) 325
HapII CCGG 1 cut(s) 611
HgaI GACGC 1 cut(s) 760
HhaI GCGC 2 cut(s) 314, 316
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 5 cut(s) 105, 388, 518, 577, 729
Hin6I GCGC 2 cut(s) 312, 314
HinP1I GCGC 2 cut(s) 312, 314
HinfI GANTC 4 cut(s) 29, 409, 460, 787
HpaII CCGG 1 cut(s) 611
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 2 cut(s) 49, 334
Hpy188I TCNGA 4 cut(s) 123, 180, 259, 680
Hpy188III TCNNGA 5 cut(s) 209, 304, 419, 574, 848
Hpy8I GTNNAC 2 cut(s) 49, 334
HpyAV CCTTC 5 cut(s) 118, 171, 221, 661, 685
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 9 cut(s) 75, 158, 171, 254, 328, 497, 620, 725, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 640
HpyF3I CTNAG 2 cut(s) 57, 647
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 5 cut(s) 105, 388, 518, 577, 729
HspAI GCGC 2 cut(s) 312, 314
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 3 cut(s) 306, 677, 715
Lsp1109I GCAGC 4 cut(s) 268, 321, 505, 655
LweI GCATC 5 cut(s) 180, 263, 325, 484, 679
MaeI CTAG 3 cut(s) 540, 596, 770
MaeIII GTNAC 3 cut(s) 398, 524, 845
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 3 cut(s) 90, 256, 698
MhlI GDGCHC 1 cut(s) 674
MluCI AATT 4 cut(s) 63, 212, 567, 781
MlyI GAGTC 2 cut(s) 23, 796
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 2 cut(s) 174, 572
Mph1103I ATGCAT 2 cut(s) 77, 499
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 806
MspI CCGG 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 843
MvaI CCWGG 1 cut(s) 843
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 422, 640
NdeII GATC 1 cut(s) 136
NlaIII CATG 5 cut(s) 105, 388, 518, 577, 729
NlaIV GGNNCC 3 cut(s) 633, 673, 717
NmuCI GTSAC 2 cut(s) 398, 845
NsiI ATGCAT 2 cut(s) 77, 499
PagI TCATGA 1 cut(s) 573
PauI GCGCGC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 409, 460
PflMI CCANNNNNTGG 1 cut(s) 864
PkrI GCNGC 4 cut(s) 283, 311, 520, 645
PleI GAGTC 2 cut(s) 23, 795
PpsI GAGTC 2 cut(s) 23, 795
Psp6I CCWGG 1 cut(s) 841
PspGI CCWGG 1 cut(s) 841
PspN4I GGNNCC 3 cut(s) 633, 673, 717
PteI GCGCGC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 806
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 4 cut(s) 282, 310, 519, 644
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 2 cut(s) 23, 796
ScrFI CCNGG 1 cut(s) 843
SduI GDGCHC 1 cut(s) 674
SfaNI GCATC 5 cut(s) 180, 263, 325, 484, 679
SmiMI CAYNNNNRTG 1 cut(s) 806
Sse9I AATT 4 cut(s) 63, 212, 567, 781
SsiI CCGC 1 cut(s) 628
SspMI CTAG 3 cut(s) 540, 596, 770
StyD4I CCNGG 1 cut(s) 841
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 115
TasI AATT 4 cut(s) 63, 212, 567, 781
TfiI GAWTC 2 cut(s) 409, 460
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 2 cut(s) 398, 845
TseI GCWGC 4 cut(s) 281, 309, 518, 643
Tsp45I GTSAC 2 cut(s) 398, 845
TspDTI ATGAA 3 cut(s) 90, 503, 699
TspRI CASTG 1 cut(s) 369
Van91I CCANNNNNTGG 1 cut(s) 864
XapI RAATTY 1 cut(s) 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 726
XmiI GTMKAC 2 cut(s) 48, 333
XspI CTAG 3 cut(s) 540, 596, 770
Zsp2I ATGCAT 2 cut(s) 77, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.